bluecellulab 2.5.7__py3-none-any.whl → 2.5.9__py3-none-any.whl

bluecellulab/tools.py

@@ -290,8 +290,7 @@ def detect_spike_step_subprocess(
 
     time = cell.get_time()
     voltage = cell.get_soma_voltage()
-    time_step = time[np.where((time > inj_start) & (time < inj_stop))]
-    voltage_step = voltage[np.where((time_step > inj_start) & (time_step < inj_stop))]
+    voltage_step = voltage[np.where((time > inj_start) & (time < inj_stop))]
     spike_detected = detect_spike(voltage_step)
 
     cell.delete()
@@ -317,8 +316,11 @@ def search_threshold_current(
     inj_stop: float,
     min_current: float,
     max_current: float,
+    current_precision: float = 0.01,
 ):
     """Search current necessary to reach threshold."""
+    if abs(max_current - min_current) < current_precision:
+        return max_current
     med_current = min_current + abs(min_current - max_current) / 2
     logger.info("Med current %d" % med_current)
 
@@ -328,18 +330,18 @@ def search_threshold_current(
     )
     logger.info("Spike threshold detection at: %f nA" % med_current)
 
-    if abs(max_current - min_current) < .01:
-        return max_current
-    elif spike_detected:
+    if spike_detected:
         return search_threshold_current(template_name, morphology_path,
                                         template_format, emodel_properties,
                                         hyp_level, inj_start, inj_stop,
-                                        min_current, med_current)
+                                        min_current, med_current,
+                                        current_precision)
     else:
         return search_threshold_current(template_name, morphology_path,
                                         template_format, emodel_properties,
                                         hyp_level, inj_start, inj_stop,
-                                        med_current, max_current)
+                                        med_current, max_current,
+                                        current_precision)
 
 
 def check_empty_topology() -> bool:

{bluecellulab-2.5.7.dist-info → bluecellulab-2.5.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 2.5.7
+Version: 2.5.9
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0

{bluecellulab-2.5.7.dist-info → bluecellulab-2.5.9.dist-info}/RECORD

@@ -10,7 +10,7 @@ bluecellulab/plotwindow.py,sha256=UVHzml-BB83m5Qr-YGkjR9kB-vSW8mM0Owh2j95yIaU,27
 bluecellulab/psection.py,sha256=EgAS8IS9DcYv2xOkNISgfg_CfRc0nDfRFjvgQhyi9eY,6328
 bluecellulab/psegment.py,sha256=rBryDYHC_uDK9itfXXrFZ0DL9F6WgRICL0j5EHN56QM,3125
 bluecellulab/rngsettings.py,sha256=Dlt34dc4AoWyxCCzUK3Jlui90VCK20xHg6gD_OJzPIw,4237
-bluecellulab/tools.py,sha256=tS0lth0La-HE13EXsfXlPro1O2lAaEBSL4ZdvMsy6jw,11083
+bluecellulab/tools.py,sha256=JrAfMVozfucwcyGklweMvEM7uGnTnWIDmk4eqI-43Es,11169
 bluecellulab/type_aliases.py,sha256=DvgjERv2Ztdw_sW63JrZTQGpJ0x5uMTFB5hcBHDb0WA,441
 bluecellulab/utils.py,sha256=fgqjgy3xzyL0zu-qjCPJdHp6PEAHADCzlr2FqyBmzHI,2012
 bluecellulab/verbosity.py,sha256=T0IgX7DrRo19faxrT4Xzb27gqxzoILQ8FzYKxvUeaPM,1342
@@ -61,9 +61,9 @@ bluecellulab/stimulus/factory.py,sha256=AOby3Sp2g8BJsRccz3afazfCyysyWIgLtcliWlye
 bluecellulab/synapse/__init__.py,sha256=RW8XoAMXOvK7OG1nHl_q8jSEKLj9ZN4oWf2nY9HAwuk,192
 bluecellulab/synapse/synapse_factory.py,sha256=YkvxbdGF-u-vxYdbRNTlX-9AtSC_3t_FQRFhybwzgrk,6805
 bluecellulab/synapse/synapse_types.py,sha256=4gne-hve2vq1Lau-LAVPsfLjffVYqAYBW3kCfC7_600,16871
-bluecellulab-2.5.7.dist-info/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
-bluecellulab-2.5.7.dist-info/LICENSE,sha256=xOouu1gC1GGklDxkITlaVl60I9Ab860O-nZsFbWydvU,11749
-bluecellulab-2.5.7.dist-info/METADATA,sha256=Mbr84D7rKgGfoZt5tWY7CCyXlOrV4o-8vhu39r3CzVs,7025
-bluecellulab-2.5.7.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-bluecellulab-2.5.7.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
-bluecellulab-2.5.7.dist-info/RECORD,,
+bluecellulab-2.5.9.dist-info/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
+bluecellulab-2.5.9.dist-info/LICENSE,sha256=xOouu1gC1GGklDxkITlaVl60I9Ab860O-nZsFbWydvU,11749
+bluecellulab-2.5.9.dist-info/METADATA,sha256=zDUbQYoAFBVjKO3yIkbYZvBC0sUA_8nO3TbECj-qFM4,7025
+bluecellulab-2.5.9.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+bluecellulab-2.5.9.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
+bluecellulab-2.5.9.dist-info/RECORD,,