bluecellulab 1.2.5__py3-none-any.whl → 1.2.7__py3-none-any.whl

bluecellulab/cell/template.py

@@ -15,7 +15,6 @@
 
 from __future__ import annotations
 
-import datetime
 import hashlib
 import os
 from pathlib import Path
@@ -111,45 +110,34 @@ class NeuronTemplate:
         match = re.search(r"begintemplate\s*(\S*)", template_content)
         template_name = match.group(1)  # type:ignore
 
-        neuron_versiondate_string = bluecellulab.neuron.h.nrnversion(4)
-        neuron_versiondate = datetime.datetime.strptime(
-            neuron_versiondate_string, "%Y-%m-%d"
-        ).date()
-        good_neuron_versiondate = datetime.date(2014, 3, 20)
-
-        if neuron_versiondate >= good_neuron_versiondate:
-            logger.info("This Neuron version supports renaming templates, enabling...")
-            # add bluecellulab to the template name, so that we don't interfere with
-            # templates load outside of bluecellulab
-            template_name = "%s_bluecellulab" % template_name
-            template_name = get_neuron_compliant_template_name(template_name)
-            if template_name in cls.used_template_names:
-                new_template_name = template_name
-                while new_template_name in cls.used_template_names:
-                    new_template_name = "%s_x" % new_template_name
-                    new_template_name = get_neuron_compliant_template_name(
-                        new_template_name
-                    )
+        logger.info("This Neuron version supports renaming templates, enabling...")
+        # add bluecellulab to the template name, so that we don't interfere with
+        # templates load outside of bluecellulab
+        template_name = "%s_bluecellulab" % template_name
+        template_name = get_neuron_compliant_template_name(template_name)
+        if template_name in cls.used_template_names:
+            new_template_name = template_name
+            while new_template_name in cls.used_template_names:
+                new_template_name = "%s_x" % new_template_name
+                new_template_name = get_neuron_compliant_template_name(
+                    new_template_name
+                )
 
-                template_name = new_template_name
+            template_name = new_template_name
 
-            cls.used_template_names.add(template_name)
-            template_content = re.sub(
-                r"begintemplate\s*(\S*)",
-                "begintemplate %s" % template_name,
-                template_content,
-            )
-            template_content = re.sub(
-                r"endtemplate\s*(\S*)",
-                "endtemplate %s" % template_name,
-                template_content,
-            )
+        cls.used_template_names.add(template_name)
+        template_content = re.sub(
+            r"begintemplate\s*(\S*)",
+            "begintemplate %s" % template_name,
+            template_content,
+        )
+        template_content = re.sub(
+            r"endtemplate\s*(\S*)",
+            "endtemplate %s" % template_name,
+            template_content,
+        )
 
-            bluecellulab.neuron.h(template_content)
-        else:
-            logger.info("This Neuron version doesn't support renaming "
-                        "templates, disabling...")
-            bluecellulab.neuron.h.load_file(template_filename)
+        bluecellulab.neuron.h(template_content)
 
         return template_name
 

bluecellulab/circuit/config/simulation_config.py

@@ -25,7 +25,6 @@ if BLUEPY_AVAILABLE:
     from bluepy_configfile.configfile import BlueConfig
     from bluepy.utils import open_utf8
 from bluepysnap import Simulation as SnapSimulation
-from bluepysnap.circuit_validation import validate as validate_circuit
 
 from bluecellulab.circuit.config.sections import Conditions, ConnectionOverrides
 from bluecellulab.stimuli import Stimulus
@@ -308,10 +307,6 @@ class SonataSimulationConfig:
         else:
             raise TypeError("Invalid config type.")
 
-        # run snap's circuit validation to early detect errors
-        circuit_config_path = self.impl.config["network"]
-        validate_circuit(circuit_config_path, skip_slow=False, only_errors=True)
-
     def get_all_projection_names(self) -> list[str]:
         unique_names = {
             n

{bluecellulab-1.2.5.dist-info → bluecellulab-1.2.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 1.2.5
+Version: 1.2.7
 Summary: The Pythonic Blue Brain simulator access
 Home-page: https://github.com/BlueBrain/BlueCelluLab
 Author: Blue Brain Project, EPFL
@@ -71,7 +71,7 @@ Main dependencies
 =================
 
 * `Python 3.8+ <https://www.python.org/downloads/release/python-380/>`_
-* `Neuron 7.4+ <http://neuron.yale.edu/>`_ (compiled with Python support)
+* `Neuron 8.0.2+ <https://pypi.org/project/NEURON/>`_
 
 Installation
 ============

{bluecellulab-1.2.5.dist-info → bluecellulab-1.2.7.dist-info}/RECORD

@@ -21,7 +21,7 @@ bluecellulab/cell/section_distance.py,sha256=ZgqFkN5gFfPxDEAIjEZEiLp_EpxLHxKWsQ_
 bluecellulab/cell/serialized_sections.py,sha256=gKM_IaDV5fZ35v3AWYN5-lyEopYsBlEu0cSJerQMJyw,1403
 bluecellulab/cell/sonata_proxy.py,sha256=NU2VxE0emQjd8HPpNgqPg4c7HD91PIME9lxXeLwfz0M,1529
 bluecellulab/cell/stimuli_generator.py,sha256=jd4fQJ1Q6QvxR_nGLo6XKxkAs8ogamcUDWf1qCQbB3g,6508
-bluecellulab/cell/template.py,sha256=XCWZ9R_cfFVpmpQyU6TPY6ZEBYoGk13jThGcSyBfdOA,8950
+bluecellulab/cell/template.py,sha256=viNB__3NUUpb9DDkcG8LvLJU2duVogp3t69IUJKVffM,8318
 bluecellulab/cell/ballstick/__init__.py,sha256=vywMSPAeTuCcK_E9gD8UX2XD1KfKbfCVFOFnFSgznzg,450
 bluecellulab/cell/ballstick/emodel.hoc,sha256=PtgCphFV1LWc9bw9e3QMz-1ir1N5aZTM6TsYzfrS-UU,1746
 bluecellulab/cell/ballstick/morphology.asc,sha256=EO0VIRilJAwpiDP2hIevwusfvYptNYhvsu1f5GgbSQo,190
@@ -35,7 +35,7 @@ bluecellulab/circuit/synapse_properties.py,sha256=mUQa1nEr7hjETFptX7W9EDlaDyPhlq
 bluecellulab/circuit/validate.py,sha256=-h3PMrIyX51ZEd3NqaeTp-gWrQj_yt2dH3Jz0l6cZAQ,3593
 bluecellulab/circuit/config/__init__.py,sha256=gv0VV47FtvVBWz8cmS6obRqELvFJPftyRbBnwB3PNdc,148
 bluecellulab/circuit/config/sections.py,sha256=OG4yKQU6jhGx7waLyblZKZ93h9Gp00yAzaDz9nnB6BQ,6905
-bluecellulab/circuit/config/simulation_config.py,sha256=gQ-haxSsixPhE785ECVFNGgAEOWiCYDS_fbkFD-fX2o,13711
+bluecellulab/circuit/config/simulation_config.py,sha256=EvGvRLYouHvjWejQEXkPpwK_M3wtVabcwI9E0DVRMKA,13437
 bluecellulab/hoc/Cell.hoc,sha256=z77qRQG_-afj-RLX0xN6V-K6Duq3bR7vmlDrGWPdh4E,16435
 bluecellulab/hoc/RNGSettings.hoc,sha256=wOtPxVMkCBTHsFLs5jPMKyverm1llXqaX8VKsAX43r8,1413
 bluecellulab/hoc/TDistFunc.hoc,sha256=WKX-anvL83xGuGPH9g1oIORB17UM4Pi3-iIXzKO-pUQ,2663
@@ -48,9 +48,9 @@ bluecellulab/synapse/__init__.py,sha256=mgrricA5NRNxntsEJFzuJTScr9MKY1FUFxCoVe4J
 bluecellulab/synapse/synapse_factory.py,sha256=SeDf5bK_yjbJzMEW7EQPPG6vyeaSt6MyzUgvu87kfrQ,3475
 bluecellulab/synapse/synapse_params.py,sha256=eAnUmTQlcYOoa7o7obkaF8G04w2C8_-4fxc8Q6v335I,2276
 bluecellulab/synapse/synapse_types.py,sha256=VZZU6SAhVpMbCk1HkZU2cZnq-h-Yxt2dMHmSawDapHw,17007
-bluecellulab-1.2.5.dist-info/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
-bluecellulab-1.2.5.dist-info/LICENSE,sha256=xOouu1gC1GGklDxkITlaVl60I9Ab860O-nZsFbWydvU,11749
-bluecellulab-1.2.5.dist-info/METADATA,sha256=tBiZvbcHZ5QVn4QDpRuDc9JGTQDCBkyr0dMZzImA9K4,6085
-bluecellulab-1.2.5.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
-bluecellulab-1.2.5.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
-bluecellulab-1.2.5.dist-info/RECORD,,
+bluecellulab-1.2.7.dist-info/AUTHORS.txt,sha256=EDs3H-2HXBojbma10psixk3C2rFiOCTIREi2ZAbXYNQ,179
+bluecellulab-1.2.7.dist-info/LICENSE,sha256=xOouu1gC1GGklDxkITlaVl60I9Ab860O-nZsFbWydvU,11749
+bluecellulab-1.2.7.dist-info/METADATA,sha256=KLU_ek5VukRAxxwP5cX17S2-8Dnb2Jupd1qgZcKffQk,6065
+bluecellulab-1.2.7.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
+bluecellulab-1.2.7.dist-info/top_level.txt,sha256=VSyEP8w9l3pXdRkyP_goeMwiNA8KWwitfAqUkveJkdQ,13
+bluecellulab-1.2.7.dist-info/RECORD,,