bioversions 0.5.561.dev0__py3-none-any.whl → 0.5.563__py3-none-any.whl

bioversions/resources/__init__.py

@@ -18,6 +18,7 @@ HERE = Path(__file__).parent.resolve()
 VERSIONS_PATH = HERE.joinpath(HERE, "versions.json")
 
 ROOT = HERE.parent.parent.parent.resolve()
+PYPROJECT_TOML_PATH = ROOT.joinpath("pyproject.toml")
 DOCS = ROOT.joinpath("docs")
 EXPORTS_DIRECTORY = DOCS.joinpath("_data")
 EXPORT_PATH = EXPORTS_DIRECTORY.joinpath("versions.yml")
@@ -26,6 +27,11 @@ FAILURES_PATH = DOCS.joinpath("failures.md")
 
 def load_versions():
     """Load Bioversions data."""
+    if not VERSIONS_PATH.is_file():
+        raise RuntimeError(
+            f"bioversions was not packaged/built/installed properly -"
+            f"{VERSIONS_PATH.name} was not found inside the distribution"
+        )
     with open(VERSIONS_PATH) as file:
         return json.load(file)
 
@@ -35,13 +41,20 @@ def _date_converter(o):
         return o.strftime("%Y-%m-%d")
 
 
-def write_versions(versions, indent: int = 2, **kwargs):
+def write_versions(versions, indent: int = 2, **kwargs) -> None:
     """Write Bioversions data."""
+    _ensure_editable()
     with open(VERSIONS_PATH, "w") as file:
         json.dump(versions, file, indent=indent, default=_date_converter, **kwargs)
 
 
-def write_export(versions):
+def write_export(versions) -> None:
     """Write Bioversions data to the export directory."""
+    _ensure_editable()
     with open(EXPORT_PATH, "w") as file:
         yaml.safe_dump(versions, file)
+
+
+def _ensure_editable() -> None:
+    if not PYPROJECT_TOML_PATH.is_file():
+        raise RuntimeError("can not make export when bioversions is not installed in editable mode")

bioversions/resources/versions.json

@@ -1,7 +1,7 @@
 {
   "annotations": {
-    "revision": 857,
-    "date": "2024-11-27",
+    "revision": 859,
+    "date": "2024-12-04",
     "author": "runner"
   },
   "database": [
@@ -681,6 +681,11 @@
           "retrieved": "2024-11-02",
           "version": "4.4.239",
           "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.239"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "4.4.240",
+          "homepage": "https://downloads.thebiogrid.org/BioGRID/Release-Archive/BIOGRID-4.4.240"
         }
       ],
       "vtype": "semver"
@@ -1573,6 +1578,11 @@
           "retrieved": "2024-11-06",
           "version": "237",
           "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel237/"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "238",
+          "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/chebi/archive/rel238/"
         }
       ],
       "vtype": "sequential"
@@ -1802,6 +1812,10 @@
         {
           "retrieved": "2024-11-02",
           "version": "01-Nov-2024"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "01-Dec-2024"
         }
       ],
       "name": "CiVIC",
@@ -2884,6 +2898,12 @@
           "version": "2024-11-01",
           "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-11-01",
           "date": "2024-11-01"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-11-27",
+          "homepage": "https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/main/src/ontology/releases/2024-11-27",
+          "date": "2024-11-27"
         }
       ],
       "vtype": "date"
@@ -3823,6 +3843,10 @@
         {
           "retrieved": "2024-10-03",
           "version": "2024-10-02"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-11-27"
         }
       ],
       "vtype": "date"
@@ -5444,6 +5468,11 @@
           "retrieved": "2024-10-15",
           "version": "2024-10-01",
           "homepage": "https://storage.googleapis.com/public-download-files/hgnc/archive/archive/monthly/json/hgnc_complete_set_2024-10-01.json"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-11-01",
+          "homepage": "https://storage.googleapis.com/public-download-files/hgnc/archive/archive/monthly/json/hgnc_complete_set_2024-11-01.json"
         }
       ],
       "name": "HGNC",
@@ -6173,6 +6202,12 @@
           "version": "102.0",
           "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/102.0/",
           "date": "2024-10-03"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "103.0",
+          "homepage": "ftp://ftp.ebi.ac.uk/pub/databases/interpro/103.0/",
+          "date": "2024-11-28"
         }
       ],
       "vtype": "semver_minor"
@@ -6413,6 +6448,11 @@
           "retrieved": "2024-09-29",
           "version": "112.0",
           "date": "2024-10-01"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "112.1",
+          "date": "2024-12-01"
         }
       ],
       "vtype": "semver_minor"
@@ -9038,6 +9078,16 @@
           "retrieved": "2024-11-27",
           "version": "November 25, 2024",
           "date": "2024-11-25"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "November 27, 2024",
+          "date": "2024-11-27"
+        },
+        {
+          "retrieved": "2024-12-04",
+          "version": "December 2, 2024",
+          "date": "2024-12-02"
         }
       ],
       "name": "Online Mendelian Inheritance in Man",
@@ -10805,6 +10855,12 @@
           "version": "2024-11-01",
           "homepage": "https://www.pombase.org/data/releases/pombase-2024-11-01/",
           "date": "2024-11-01"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-12-01",
+          "homepage": "https://www.pombase.org/data/releases/pombase-2024-12-01/",
+          "date": "2024-12-01"
         }
       ],
       "name": "PomBase",
@@ -11207,6 +11263,11 @@
           "retrieved": "2024-11-01",
           "version": "2024-11-01",
           "homepage": "https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Monthly/2024-11-01"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-12-01",
+          "homepage": "https://ftp.ncbi.nlm.nih.gov/pubchem/Compound/Monthly/2024-12-01"
         }
       ],
       "name": "PubChem",
@@ -11520,6 +11581,10 @@
         {
           "retrieved": "2024-11-26",
           "version": "2024-11-22"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-11-29"
         }
       ],
       "name": "Rat Genome Database",
@@ -11948,6 +12013,11 @@
           "retrieved": "2024-10-03",
           "version": "135",
           "date": "2024-10-02"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "136",
+          "date": "2024-11-27"
         }
       ],
       "vtype": "date"
@@ -12149,6 +12219,11 @@
           "retrieved": "2024-11-05",
           "version": "2024-11-04",
           "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_11042024.zip"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-12-02",
+          "homepage": "https://download.nlm.nih.gov/umls/kss/rxnorm/RxNorm_full_12022024.zip"
         }
       ],
       "name": "RxNorm",
@@ -14695,6 +14770,14 @@
         {
           "retrieved": "2024-11-27",
           "version": "2024-11-27"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-12-03"
+        },
+        {
+          "retrieved": "2024-12-04",
+          "version": "2024-12-04"
         }
       ],
       "name": "SwissLipids",
@@ -15590,6 +15673,12 @@
           "version": "2024_05",
           "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_05/",
           "date": "2024-05-01"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024_06",
+          "homepage": "ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/release-2024_06/",
+          "date": "2024-06-01"
         }
       ],
       "vtype": "month"
@@ -19611,6 +19700,14 @@
         {
           "retrieved": "2024-11-27",
           "version": "2024-11-25"
+        },
+        {
+          "retrieved": "2024-12-03",
+          "version": "2024-12-01"
+        },
+        {
+          "retrieved": "2024-12-04",
+          "version": "2024-12-02"
         }
       ],
       "name": "Zebrafish Information Network",

bioversions/version.py

@@ -7,7 +7,7 @@ __all__ = [
     "VERSION",
 ]
 
-VERSION = "0.5.561-dev"
+VERSION = "0.5.563"
 
 
 def get_git_hash() -> str:

{bioversions-0.5.561.dev0.dist-info → bioversions-0.5.563.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioversions
-Version: 0.5.561.dev0
+Version: 0.5.563
 Summary: Get the current version for biological databases
 Project-URL: Bug Tracker, https://github.com/biopragmatics/bioversions/issues
 Project-URL: Homepage, https://github.com/biopragmatics/bioversions

{bioversions-0.5.561.dev0.dist-info → bioversions-0.5.563.dist-info}/RECORD

@@ -6,11 +6,11 @@ bioversions/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bioversions/slack_client.py,sha256=p9HmnyRCVuQvje0RbdDK9QuRlSw__WwFCJ8Be9cIkzM,1209
 bioversions/twitter_client.py,sha256=9d5Am0FSs7_EgGdjkxqpo98vPir9rjIXIxhZMmLgK5Q,1285
 bioversions/utils.py,sha256=x5d4p12VMlD5F8-y_J6JE5sct7BCV1d-zO-y5bSamSM,10342
-bioversions/version.py,sha256=lWH3hdBFhbAky8bHx3JRJtPKyxtApx596YsOUXA20uo,591
+bioversions/version.py,sha256=OWRNMsyf8xt7a95jjGlqcROBFk0pRpn-V5UJEpFn57g,587
 bioversions/wsgi.py,sha256=-F7pUZipcQgj1T_f-9QCZBVdQ9sZBH93x3hxh9h7klU,794
-bioversions/resources/__init__.py,sha256=zztRKsMzFpL7ONI5W5jfw0YAHK_cvcjpX_afyILwHDk,1147
+bioversions/resources/__init__.py,sha256=Nxw6w6_gRC4B_JwvbAAKpNR2rIpkNRZ5UkBIMdNqldY,1659
 bioversions/resources/update.py,sha256=btT_tdp0NKBRdshf4VuOe-vHWq0QQtcWWFcXS8QUfLU,3626
-bioversions/resources/versions.json,sha256=z4LobxLg8z-ltiARxDt08VuLIwNBtjCeCC8WUgg53o8,477637
+bioversions/resources/versions.json,sha256=7wHy3SdFGQz0KkvAFNyeJek7jmc5FV9T1K-xGVzlm2w,480613
 bioversions/sources/__init__.py,sha256=pXONlDoxWIVRTSdCN3RDr3aMY38QGPOt0EwPAMCaIF8,6248
 bioversions/sources/antibodyregistry.py,sha256=6GF_9v8A_8Y4o6_nsZ9cAOP5vK3ZbPQ5qeL99UefR80,680
 bioversions/sources/bigg.py,sha256=iVrxyvKiEIUXs6FM2AiLDYa-yYDNGMONmiIv_R6KBg4,661
@@ -73,8 +73,8 @@ bioversions/sources/wikipathways.py,sha256=STw8Bivc3IZLYIx-KwpxHLUmRTqNfHm0wQywD
 bioversions/sources/zfin.py,sha256=3Ooz3lDx8J42OAoyU8eJI-fRnMRiYyUMcj4fDE5DVLQ,683
 bioversions/templates/base.html,sha256=AKB6aT39U9VtOM2zvW_Um5IgYO9Ky-CLpByxy5XXO5M,713
 bioversions/templates/home.html,sha256=z98FSslCRP2K39xbHpSPgk19j7Z21PSbRGAtaXI0Md0,2756
-bioversions-0.5.561.dev0.dist-info/METADATA,sha256=FtsFykxqU4DJgnsVhNAsWILvjwnTdnWJjExsJ2919Dw,19730
-bioversions-0.5.561.dev0.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
-bioversions-0.5.561.dev0.dist-info/entry_points.txt,sha256=A3qrS-nvKNZPZWQbYlmsmiDTge524C4yR-arRJwdHls,53
-bioversions-0.5.561.dev0.dist-info/licenses/LICENSE,sha256=QcgJZKGxlW5BwBNnCBL8VZLVtRvXs81Ch9lJRQSIpJg,1076
-bioversions-0.5.561.dev0.dist-info/RECORD,,
+bioversions-0.5.563.dist-info/METADATA,sha256=O9WSdNUrXwkPL9m0JsKKRKrTK19rgya2YR8jhi2PhKA,19725
+bioversions-0.5.563.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
+bioversions-0.5.563.dist-info/entry_points.txt,sha256=A3qrS-nvKNZPZWQbYlmsmiDTge524C4yR-arRJwdHls,53
+bioversions-0.5.563.dist-info/licenses/LICENSE,sha256=QcgJZKGxlW5BwBNnCBL8VZLVtRvXs81Ch9lJRQSIpJg,1076
+bioversions-0.5.563.dist-info/RECORD,,