bioversions 0.5.376__py3-none-any.whl → 0.7.1__py3-none-any.whl

bioversions-0.7.1.dist-info/METADATA

@@ -0,0 +1,393 @@
+Metadata-Version: 2.4
+Name: bioversions
+Version: 0.7.1
+Summary: Get the current version for biological databases
+Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases
+Author: Charles Tapley Hoyt
+Author-email: Charles Tapley Hoyt <cthoyt@gmail.com>
+License-File: LICENSE
+Classifier: Development Status :: 4 - Beta
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Framework :: Pytest
+Classifier: Framework :: tox
+Classifier: Framework :: Sphinx
+Classifier: Natural Language :: English
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Typing :: Typed
+Requires-Dist: requests
+Requires-Dist: beautifulsoup4
+Requires-Dist: cachier>=2.2.1
+Requires-Dist: pystow>=0.1.0
+Requires-Dist: click
+Requires-Dist: click-default-group
+Requires-Dist: dataclasses-json
+Requires-Dist: tabulate
+Requires-Dist: more-click
+Requires-Dist: pyyaml
+Requires-Dist: tqdm
+Requires-Dist: bioregistry[align]>=0.10.0
+Requires-Dist: lxml
+Requires-Dist: pydantic>=2.0
+Requires-Dist: psycopg2-binary
+Requires-Dist: matplotlib ; extra == 'charts'
+Requires-Dist: seaborn ; extra == 'charts'
+Requires-Dist: sphinx>=8 ; extra == 'docs'
+Requires-Dist: sphinx-rtd-theme>=3.0 ; extra == 'docs'
+Requires-Dist: sphinx-click ; extra == 'docs'
+Requires-Dist: sphinx-automodapi ; extra == 'docs'
+Requires-Dist: slack-sdk ; extra == 'slack'
+Requires-Dist: pytest ; extra == 'tests'
+Requires-Dist: coverage[toml] ; extra == 'tests'
+Requires-Dist: tweepy ; extra == 'twitter'
+Requires-Dist: flask ; extra == 'web'
+Requires-Dist: bootstrap-flask ; extra == 'web'
+Maintainer: Charles Tapley Hoyt
+Maintainer-email: Charles Tapley Hoyt <cthoyt@gmail.com>
+Requires-Python: >=3.10
+Project-URL: Bug Tracker, https://github.com/biopragmatics/bioversions/issues
+Project-URL: Documentation, https://bioversions.readthedocs.io
+Project-URL: Funding, https://github.com/sponsors/cthoyt
+Project-URL: Homepage, https://github.com/biopragmatics/bioversions
+Project-URL: Repository, https://github.com/biopragmatics/bioversions.git
+Provides-Extra: charts
+Provides-Extra: docs
+Provides-Extra: slack
+Provides-Extra: tests
+Provides-Extra: twitter
+Provides-Extra: web
+Description-Content-Type: text/markdown
+
+<p align="center">
+  <img src="https://github.com/biopragmatics/bioversions/raw/main/docs/source/logo.png" height="150">
+</p>
+
+<h1 align="center">
+  Bioversions
+</h1>
+
+<p align="center">
+    <a href="https://github.com/biopragmatics/bioversions/actions/workflows/tests.yml">
+        <img alt="Tests" src="https://github.com/biopragmatics/bioversions/actions/workflows/tests.yml/badge.svg" /></a>
+    <a href="https://pypi.org/project/bioversions">
+        <img alt="PyPI" src="https://img.shields.io/pypi/v/bioversions" /></a>
+    <a href="https://pypi.org/project/bioversions">
+        <img alt="PyPI - Python Version" src="https://img.shields.io/pypi/pyversions/bioversions" /></a>
+    <a href="https://github.com/biopragmatics/bioversions/blob/main/LICENSE">
+        <img alt="PyPI - License" src="https://img.shields.io/pypi/l/bioversions" /></a>
+    <a href='https://bioversions.readthedocs.io/en/latest/?badge=latest'>
+        <img src='https://readthedocs.org/projects/bioversions/badge/?version=latest' alt='Documentation Status' /></a>
+    <a href="https://codecov.io/gh/biopragmatics/bioversions/branch/main">
+        <img src="https://codecov.io/gh/biopragmatics/bioversions/branch/main/graph/badge.svg" alt="Codecov status" /></a>  
+    <a href="https://github.com/cthoyt/cookiecutter-python-package">
+        <img alt="Cookiecutter template from @cthoyt" src="https://img.shields.io/badge/Cookiecutter-snekpack-blue" /></a>
+    <a href="https://github.com/astral-sh/ruff">
+        <img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json" alt="Ruff" style="max-width:100%;"></a>
+    <a href="https://github.com/biopragmatics/bioversions/blob/main/.github/CODE_OF_CONDUCT.md">
+        <img src="https://img.shields.io/badge/Contributor%20Covenant-2.1-4baaaa.svg" alt="Contributor Covenant"/></a>
+    <a href="https://zenodo.org/badge/latestdoi/318852276">
+        <img src="https://zenodo.org/badge/318852276.svg" alt="DOI"></a>
+    <a href="https://github.com/biopragmatics/bioregistry">
+        <img alt="Powered by the Bioregistry" src="https://img.shields.io/static/v1?label=Powered%20by&message=Bioregistry&color=BA274A&style=flat&logo=image/png;base64,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" /></a>
+</p>
+
+What's the current version for each biological database?
+
+A daily updated static listing of all current versions (that are incorporated)
+can be found at https://biopragmatics.github.io/bioversions.
+
+## 💪 Getting Started
+
+```python
+import bioversions
+
+assert bioversions.get_version('biogrid') == '4.2.192', 'This was true on Dec 5th, 2020!'
+
+# If you want more information, use the resolve() function
+bioversion = bioversions.resolve('biogrid')
+assert bioversion.version == '4.2.192'
+```
+
+By default, the results are cached and only refreshed once per day with the help
+of [`cachier`](https://github.com/shaypal5/cachier). The cache is stored in
+`~/.data/bioversions`. The cache location can be overridden by setting the
+`BIOVERSIONS_HOME` environment variable via
+[`pystow`](https://github.com/cthoyt/pystow).
+
+## 🌐 Web Application
+
+While https://biopragmatics.github.io/bioversions provides a daily updated
+static listing of the database, you can run a dynamic version with an API from
+your shell with:
+
+```bash
+$ bioversions web
+```
+
+Options can be listed with `bioversions web --help`.
+
+You can navigate to http://localhost:5000 to see all versions as HTML or
+programmatically resolve given databases with the
+`http://localhost:5000/database/<name>` endpoint like in the following:
+
+```python
+import requests
+
+res = requests.get('http://localhost:5000/database/biogrid').json()
+assert res['success']
+assert res['result']['name'] == 'BioGRID'
+assert res['result']['version'] == '4.2.192', 'This was true on Dec 5th, 2020!'
+```
+
+## CLI Usage
+
+You can use `bioversions get` to incorporate the latest versions in your shell
+scripts or REPL usage like in:
+
+```bash
+$ wget "https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-$(bioversions get biogrid)/BIOGRID-ALL-$(bioversions get biogrid).mitab.zip"
+```
+
+## 🚀 Installation
+
+The most recent release can be installed from
+[PyPI](https://pypi.org/project/bioversions/) with:
+
+```console
+python3 -m pip install bioversions
+```
+
+The most recent code and data can be installed directly from GitHub with:
+
+```console
+python3 -m pip install git+https://github.com/biopragmatics/bioversions.git
+```
+
+## 👐 Contributing
+
+Contributions, whether filing an issue, making a pull request, or forking, are
+appreciated. See
+[CONTRIBUTING.md](https://github.com/biopragmatics/bioversions/blob/master/.github/CONTRIBUTING.md)
+for more information on getting involved.
+
+To add more databases to the list, you can create a new submodule of
+`bioversions.sources` and extend the `bioversions.utils.Getter` class to
+identify the most recent version for your target database. See
+`bioversions.sources.biogrid` as an example.
+
+## 👋 Attribution
+
+### ⚖️ License
+
+The code in this package is licensed under the MIT License.
+
+<!--
+### 📖 Citation
+
+Citation goes here!
+-->
+
+### 🎁 Support
+
+The Bioversions service was originally developed by the
+[INDRA Lab](https://indralab.github.io), a part of the
+[Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/about/)
+and the
+[Harvard Program in Therapeutic Science (HiTS)](https://hits.harvard.edu) at
+[Harvard Medical School](https://hms.harvard.edu/).
+
+### 💰 Funding
+
+The development of this package was partially funded by the DARPA Young Faculty
+Award W911NF2010255 (PI: Benjamin M. Gyori).
+
+### 🍪 Cookiecutter
+
+This package was created with
+[@audreyfeldroy](https://github.com/audreyfeldroy)'s
+[cookiecutter](https://github.com/cookiecutter/cookiecutter) package using
+[@cthoyt](https://github.com/cthoyt)'s
+[cookiecutter-snekpack](https://github.com/cthoyt/cookiecutter-snekpack)
+template.
+
+## 🛠️ For Developers
+
+<details>
+  <summary>See developer instructions</summary>
+
+The final section of the README is for if you want to get involved by making a
+code contribution.
+
+### Development Installation
+
+To install in development mode, use the following:
+
+```console
+$ git clone git+https://github.com/biopragmatics/bioversions.git
+$ cd bioversions
+$ uv --preview pip install -e .
+```
+
+Alternatively, install using legacy pip with `UV_PREVIEW` mode enabled until the
+uv build backend becomes a stable feature:
+
+```console
+$ UV_PREVIEW=1 python3 -m pip install -e .
+```
+
+### Updating Package Boilerplate
+
+This project uses `cruft` to keep boilerplate (i.e., configuration, contribution
+guidelines, documentation configuration) up-to-date with the upstream
+cookiecutter package. Update with the following:
+
+```console
+python3 -m pip install cruft
+cruft update
+```
+
+More info on Cruft's update command is available
+[here](https://github.com/cruft/cruft?tab=readme-ov-file#updating-a-project).
+
+### 🥼 Testing
+
+After cloning the repository and installing `tox` with
+`python3 -m pip install tox tox-uv`, the unit tests in the `tests/` folder can
+be run reproducibly with:
+
+```console
+tox -e py
+```
+
+Additionally, these tests are automatically re-run with each commit in a
+[GitHub Action](https://github.com/biopragmatics/bioversions/actions?query=workflow%3ATests).
+
+### 📖 Building the Documentation
+
+The documentation can be built locally using the following:
+
+```console
+git clone git+https://github.com/biopragmatics/bioversions.git
+cd bioversions
+tox -e docs
+open docs/build/html/index.html
+```
+
+The documentation automatically installs the package as well as the `docs` extra
+specified in the [`pyproject.toml`](pyproject.toml). `sphinx` plugins like
+`texext` can be added there. Additionally, they need to be added to the
+`extensions` list in [`docs/source/conf.py`](docs/source/conf.py).
+
+The documentation can be deployed to [ReadTheDocs](https://readthedocs.io) using
+[this guide](https://docs.readthedocs.io/en/stable/intro/import-guide.html). The
+[`.readthedocs.yml`](.readthedocs.yml) YAML file contains all the configuration
+you'll need. You can also set up continuous integration on GitHub to check not
+only that Sphinx can build the documentation in an isolated environment (i.e.,
+with `tox -e docs-test`) but also that
+[ReadTheDocs can build it too](https://docs.readthedocs.io/en/stable/pull-requests.html).
+
+#### Configuring ReadTheDocs
+
+1. Log in to ReadTheDocs with your GitHub account to install the integration at
+   https://readthedocs.org/accounts/login/?next=/dashboard/
+2. Import your project by navigating to https://readthedocs.org/dashboard/import
+   then clicking the plus icon next to your repository
+3. You can rename the repository on the next screen using a more stylized name
+   (i.e., with spaces and capital letters)
+4. Click next, and you're good to go!
+
+### 📦 Making a Release
+
+#### Configuring Zenodo
+
+[Zenodo](https://zenodo.org) is a long-term archival system that assigns a DOI
+to each release of your package.
+
+1. Log in to Zenodo via GitHub with this link:
+   https://zenodo.org/oauth/login/github/?next=%2F. This brings you to a page
+   that lists all of your organizations and asks you to approve installing the
+   Zenodo app on GitHub. Click "grant" next to any organizations you want to
+   enable the integration for, then click the big green "approve" button. This
+   step only needs to be done once.
+2. Navigate to https://zenodo.org/account/settings/github/, which lists all of
+   your GitHub repositories (both in your username and any organizations you
+   enabled). Click the on/off toggle for any relevant repositories. When you
+   make a new repository, you'll have to come back to this
+
+After these steps, you're ready to go! After you make "release" on GitHub (steps
+for this are below), you can navigate to
+https://zenodo.org/account/settings/github/repository/biopragmatics/bioversions
+to see the DOI for the release and link to the Zenodo record for it.
+
+#### Registering with the Python Package Index (PyPI)
+
+You only have to do the following steps once.
+
+1. Register for an account on the
+   [Python Package Index (PyPI)](https://pypi.org/account/register)
+2. Navigate to https://pypi.org/manage/account and make sure you have verified
+   your email address. A verification email might not have been sent by default,
+   so you might have to click the "options" dropdown next to your address to get
+   to the "re-send verification email" button
+3. 2-Factor authentication is required for PyPI since the end of 2023 (see this
+   [blog post from PyPI](https://blog.pypi.org/posts/2023-05-25-securing-pypi-with-2fa/)).
+   This means you have to first issue account recovery codes, then set up
+   2-factor authentication
+4. Issue an API token from https://pypi.org/manage/account/token
+
+#### Configuring your machine's connection to PyPI
+
+You have to do the following steps once per machine.
+
+```console
+$ uv tool install keyring
+$ keyring set https://upload.pypi.org/legacy/ __token__
+$ keyring set https://test.pypi.org/legacy/ __token__
+```
+
+Note that this deprecates previous workflows using `.pypirc`.
+
+#### Uploading to PyPI
+
+After installing the package in development mode and installing `tox` with
+`python3 -m pip install tox tox-uv`, run the following from the console:
+
+```console
+tox -e finish
+```
+
+This script does the following:
+
+1. Uses [bump-my-version](https://github.com/callowayproject/bump-my-version) to
+   switch the version number in the `pyproject.toml`, `CITATION.cff`,
+   `src/bioversions/version.py`, and
+   [`docs/source/conf.py`](docs/source/conf.py) to not have the `-dev` suffix
+2. Packages the code in both a tar archive and a wheel using
+   [`uv build`](https://docs.astral.sh/uv/guides/publish/#building-your-package)
+3. Uploads to PyPI using
+   [`uv publish`](https://docs.astral.sh/uv/guides/publish/#publishing-your-package).
+4. Push to GitHub. You'll need to make a release going with the commit where the
+   version was bumped.
+5. Bump the version to the next patch. If you made big changes and want to bump
+   the version by minor, you can use `tox -e bumpversion -- minor` after.
+
+#### Releasing on GitHub
+
+1. Navigate to https://github.com/biopragmatics/bioversions/releases/new to
+   draft a new release
+2. Click the "Choose a Tag" dropdown and select the tag corresponding to the
+   release you just made
+3. Click the "Generate Release Notes" button to get a quick outline of recent
+   changes. Modify the title and description as you see fit
+4. Click the big green "Publish Release" button
+
+This will trigger Zenodo to assign a DOI to your release as well.
+
+</details>

bioversions-0.7.1.dist-info/RECORD

@@ -0,0 +1,81 @@
+bioversions/resources/update.py,sha256=6ed4ffb5da7434a05176c85fe15b8e7bebc75aad1042d7165857174bc4147cb5,3626
+bioversions/resources/__init__.py,sha256=371c3ac3afe0442e01fc9c2f6c000aa4d476ac8a6435167952404831d36a95d6,1659
+bioversions/resources/versions.json,sha256=2c960d1ff939ffa0820ea5e8bd1313b74b1f435c681474b703eed7f98e8949ea,500208
+bioversions/wsgi.py,sha256=f85ee95198a9710823d53fdffbd40264155d43db19047f77c7787187d87b9255,794
+bioversions/py.typed,sha256=e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855,0
+bioversions/sources/mesh.py,sha256=5ea8cf53950980e1d5736f1cffa37b46225dd45f51a1418f5c69a621a368a6f3,971
+bioversions/sources/rfam.py,sha256=3c8de33a8920baac6789fd07160da00752f524ed25ad045b3b48a24716eda5a8,540
+bioversions/sources/bigg.py,sha256=895af1caf2a2108517b3a14cd8088b0d86bec980cd18c38d9a222ffd1e8a060e,661
+bioversions/sources/itis.py,sha256=99a480060d52ac6e06404be347080c28af56e984e80cc4763f0a98266212a1df,582
+bioversions/sources/chembl.py,sha256=35cfa0149a5eac1c8efe2577b43aa47e359874558ef48ce227022d7bd0b60932,1513
+bioversions/sources/daily.py,sha256=501fcf689d9b11035b08255c208c5bca0bb631f79e9a8fee3d268f85d07b4033,256
+bioversions/sources/stringdb.py,sha256=9afd81dd24d02469cce66e246cb6f696e4a501ba3e7e8dc7aff0f022563a37b2,787
+bioversions/sources/slm.py,sha256=84fe81b16cf8cb3cdc817f4ed56482364bb46a9d3af1f01c3726273b26d106d6,766
+bioversions/sources/pathbank.py,sha256=620621044418e05d3d720ed2e01704107e260fa97a2c38ee0d1bf507f7bce62f,693
+bioversions/sources/dgi.py,sha256=8b613bedea979b8bbadfcbe4b2fd539e4d29deccf329d936c83a72626d8808bc,940
+bioversions/sources/kegg.py,sha256=748eee42969987ae6b64e76eb6a71734e9319f71c6c03373697c948718937515,905
+bioversions/sources/mirbase.py,sha256=ab70baf82cbebc42f22424029e9838a6f7a846b9587ea81be37d779871b90a9e,996
+bioversions/sources/ncit.py,sha256=eabc33412087108799d70b76ca60b27debcceb8e3bf6782ba41107c5f2dcda87,1015
+bioversions/sources/pfam.py,sha256=a2509a19315b2524a4974101d2215794c639b2ede25832449819524f4c3efff8,975
+bioversions/sources/ols.py,sha256=65eb7b050c25b98f1fd3446f0dccaeec4560e08b1c9eb871346e14261c2c2fc6,2697
+bioversions/sources/wikipathways.py,sha256=493c3c062bdcdc864b608c7e2b0a711cb526453a8d7c79b4c10cb00e68bed30b,798
+bioversions/sources/intact.py,sha256=06e67eda7e8eededc74f63eb1c73db0648665dae78323d7d92625c76ff4f7c05,596
+bioversions/sources/icf.py,sha256=0580247e61d6b50b0c08d5331a97d188a5671dda4333298628bc327af313c08a,720
+bioversions/sources/moalmanac.py,sha256=0cca2d4980f8b0639365a2609ff88f7947c47618e5826ce828a2d84be2fa4eba,749
+bioversions/sources/expasy.py,sha256=e42f66f4e93281aab60fbceeb939e4383e15db8414e02f3d95dced7cbb62aa72,771
+bioversions/sources/interpro.py,sha256=1fa75923bd60517a3b2f661e7c24e2243e2ab90440bf2621e670c36e1da2baf1,1238
+bioversions/sources/chemidplus.py,sha256=cc93605ba1d416c5939fdfcf62e01f1449d999284b1af7beee0185696b231702,1194
+bioversions/sources/cellosaurus.py,sha256=d17ae067aade4a433c0f350b26d681dda881603d1057734750b67ef19950ee01,975
+bioversions/sources/gtdb.py,sha256=95bb664a1e2e872ebe55efec9703be63bff01d15724aea1fd48feb47e150d399,1001
+bioversions/sources/oncotree.py,sha256=69b039f07e37800fd3b623816b00595333caede9403d8a9620fee515de8aa8ee,1032
+bioversions/sources/rxnorm.py,sha256=ba8a68262850132282d79c6ab5293f4997c496672ca614b26da8e22ee6856253,1010
+bioversions/sources/__init__.py,sha256=0b99d733a9b78ad746a5b8f970d9874c2b13fe81fc60e22412e2f9fc243a166d,6303
+bioversions/sources/mgi.py,sha256=4d7f95d3171616692db2c8d195d8d86f9f751c2b6885e63df70d054c7d9c2199,841
+bioversions/sources/civic.py,sha256=3eee261f77648892b6a61c3aeeddfff2bf94e63dee9fc91fcbb22a2f44c05dea,1132
+bioversions/sources/depmap.py,sha256=00b9fb914b27902ef2023f5c2d899a4235829b6b20d3045643e4fbe8deea4168,641
+bioversions/sources/flybase.py,sha256=2f5aacd0e1743a18dd927c15e837ef9e79713f7ed9d3d863ba4fa9cf5527d863,754
+bioversions/sources/icd11.py,sha256=6bc929c0fe8fdfe428c23e9f185165b1b2f589b85a58de3cc1ecffa80362084d,723
+bioversions/sources/pr.py,sha256=6c440e95057d35b7d0273d9c26bc2e0dec45cfe22f541e44b5645ebe66f4ddd6,876
+bioversions/sources/sgd.py,sha256=3e05c0bf0aa5c78f10b869e75473a5d2e034323b84ec89748e2055e1f69835d0,1084
+bioversions/sources/hgnc.py,sha256=5b2d0cf1a4fe48ab0c2945b111d3e95acdf64a32fb519ca200d2ed0900b85a9d,1099
+bioversions/sources/msigdb.py,sha256=8689c6234a84ae6e70b19b2bd21c165e2c37d83de7e71c47e605f7c54121de9a,778
+bioversions/sources/pathwaycommons.py,sha256=f7c9ef2ed143a9c1ec755c6dd8bbbc5797682df4ae3ae621c2980fa80ec16619,661
+bioversions/sources/icd10.py,sha256=f3ace5f72c5e532cb758a8104b9e48fb56cafa47a01f9f6c6458b06062856805,703
+bioversions/sources/reactome.py,sha256=12ae2e1cc763c323eaab9d90ec4f6cbdcea1cd9645b40e6d32d93c76333006f7,596
+bioversions/sources/antibodyregistry.py,sha256=5c29963e1d7bd40780582ce9539d6120bd593d0cda6f3b763b08af876a2bef8f,713
+bioversions/sources/rhea.py,sha256=ddcb28b84fa2a76520ecc123703e785ff3d4bccb93638af442d3883f54fbd57e,806
+bioversions/sources/biogrid.py,sha256=15c400f0020ded3c167704506ffaf985467087d66d975dc67865ca5efd4a71a8,734
+bioversions/sources/unversioned.py,sha256=c2f328c3bca5b9bbd0ede38ce93bd5a8d1cd079757902865f6c83c3ed05794f4,53
+bioversions/sources/obo.py,sha256=727b7470ba4cf30b421b5e1eebe758bbadeac57e9801df4fceb13948a27ff0b7,1713
+bioversions/sources/zfin.py,sha256=dcea33de50f1f09e36380a3253c78923e7d19cc46263250c723e1f0c4e4354b4,683
+bioversions/sources/npass.py,sha256=b516902495d04397e054b51a51046b11432f37deb7046758d7337ffca804d616,714
+bioversions/sources/uniprot.py,sha256=c3e16b68fc8a65e12d9a3b3288fedbd9a8e0e7b47f0a69f0fb032fb072c68a1b,924
+bioversions/sources/homologene.py,sha256=4da5b4037dcf2d2e3cd38ceb45664a0e6a3fcf01332bd6f15ffcc089a526779c,622
+bioversions/sources/pombase.py,sha256=e65348dc0aaed5f9c35049c5d117ee7103abf8714f620afbfa5e084eded1c986,766
+bioversions/sources/disgenet.py,sha256=3c02c84643c1913d9cb2b37e1679fe019cc273d67633685e904fbf16ba84f8bc,739
+bioversions/sources/complexportal.py,sha256=1adea98029a1aef5e13d7038812734ed37bfa2c9e8f6038cb3c8216b4eff1d19,671
+bioversions/sources/umls.py,sha256=ff9cfd631a1d39804a29a901db6da32e68e6e1c526e04e30a1be82359ea155aa,817
+bioversions/sources/guidetopharmacology.py,sha256=5806ac03a665caa262a8fef456bac21298b6f895bb50cad4ba702e13aa5393f8,1377
+bioversions/sources/omim.py,sha256=7aad8a3615748f5171db47098a1cdbec36b1e8596e0e857fe360dc5320748a65,916
+bioversions/sources/rgd.py,sha256=64f6cfd7bff88004699b00832560ef033f14f2977e70684ebef546b431a04d23,766
+bioversions/sources/drugcentral.py,sha256=c07db12fe096a5e54fdb4e360a75a6d57fb0dd826fda6e458a04f0d61b7570b8,1116
+bioversions/sources/signor.py,sha256=f0a0bd043c1344027e31fe8fc4e5922f44e86044ca16370e6d66368161f05c83,969
+bioversions/sources/ensembl.py,sha256=994779fcbb08ea8494e1af0324b49a9bd9649dd7fa65fba7d156b1648c9edad2,737
+bioversions/sources/pubchem.py,sha256=57e6f33479eef0935322abde994efe3292f91c7c6bb1889c5724c99ebd7d72f9,526
+bioversions/sources/drugbank.py,sha256=599c215452b5e8219e2c31423c2c6d1c7c867848309696c834b9b5f3af1f3f16,994
+bioversions/sources/chebi.py,sha256=53b5cdbb8810bb790027764284d97efa01ee12f7c259902e381ac3d3f7615616,833
+bioversions/__init__.py,sha256=7f04aa5bf8ba4ceb843188a32f6f09dfb20b2300f067284d35a1fb0441eaba38,194
+bioversions/__main__.py,sha256=4e799066f5fbbe005dc99aee68c4146b3d8572ec52891b82ad0f4e1f2de96227,108
+bioversions/utils.py,sha256=c79778a75d953250f917cfb2fc9e89139b1cb7b04257577eccefb2e5b49a9923,10342
+bioversions/charts.py,sha256=dff05cc80031529e1b06af54c0011d241a383278319d0c6fa90b3e6ad4476332,2419
+bioversions/twitter_client.py,sha256=f5de409b4152b3bfc4806763931aa9a3df2f3e2afdae32172318593262e02b94,1285
+bioversions/cli.py,sha256=939b0f29af9f7fc8aeba207b95d46f1cf59c659d15deccc348cabdcf07486bce,1563
+bioversions/version.py,sha256=b6eea3f6d1530d8ce55d55b05e1cdb036312d86f2870a544d8f6ffdf0e7c17af,585
+bioversions/templates/home.html,sha256=cfdf054ac94244fd8adfdc5b1e948f824d7d8fb676d4f49b44602d69723431dd,2756
+bioversions/templates/base.html,sha256=00a07a693dfd53d56d38cdb3bd6fd49b922060ef4acbe08ba41cb1cb95d73b93,713
+bioversions/slack_client.py,sha256=a7d1e69f244256e42f8ded116dd0caf50b91952c3ffd6c05089f017bd7089333,1209
+bioversions-0.7.1.dist-info/licenses/LICENSE,sha256=41c80964a1b1956e41c013670812fc5592d5b51bd7b3cd4287d949450488a498,1076
+bioversions-0.7.1.dist-info/WHEEL,sha256=4e5918c46f66f9d1af964bb215c4c92fb586d1f50a8cc3999af24bf5ac283f87,79
+bioversions-0.7.1.dist-info/entry_points.txt,sha256=4cdd92beb5155987fe3fa990cbaa0268658f0e30d27ed349fada88c48b97484e,54
+bioversions-0.7.1.dist-info/METADATA,sha256=23eb6122fcc15833a895ddf305f2bcf1759f4237076e5339a3e78bb2db230c0b,18807
+bioversions-0.7.1.dist-info/RECORD,,

bioversions-0.7.1.dist-info/WHEEL

@@ -0,0 +1,4 @@
+Wheel-Version: 1.0
+Generator: uv 0.5.18
+Root-Is-Purelib: true
+Tag: py3-none-any

{bioversions-0.5.376.dist-info → bioversions-0.7.1.dist-info}/entry_points.txt

@@ -1,2 +1,3 @@
 [console_scripts]
 bioversions = bioversions.cli:main
+

{bioversions-0.5.376.dist-info → bioversions-0.7.1.dist-info/licenses}/LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2021 Charles Tapley Hoyt
+Copyright (c) 2024 Charles Tapley Hoyt
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal