bioversions 0.5.320__py3-none-any.whl → 0.7.1__py3-none-any.whl

bioversions-0.5.320.dist-info/METADATA

@@ -1,166 +0,0 @@
-Metadata-Version: 2.1
-Name: bioversions
-Version: 0.5.320
-Summary: What's the current version for each biological database?
-Home-page: https://github.com/biopragmatics/bioversions
-Download-URL: https://github.com/biopragmatics/bioversions/releases
-Author: Charles Tapley Hoyt
-Author-email: cthoyt@gmail.com
-Maintainer: Charles Tapley Hoyt
-Maintainer-email: cthoyt@gmail.com
-License: MIT
-Project-URL: Bug Tracker, https://github.com/biopragmatics/bioversions/issues
-Keywords: databases,biological databases
-Classifier: Development Status :: 4 - Beta
-Classifier: Environment :: Console
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3 :: Only
-Requires-Python: >=3.8
-Description-Content-Type: text/markdown
-License-File: LICENSE
-Requires-Dist: requests
-Requires-Dist: requests-ftp
-Requires-Dist: beautifulsoup4
-Requires-Dist: cachier >=2.2.1
-Requires-Dist: pystow >=0.1.0
-Requires-Dist: click
-Requires-Dist: click-default-group
-Requires-Dist: dataclasses-json
-Requires-Dist: tabulate
-Requires-Dist: more-click
-Requires-Dist: pyyaml
-Requires-Dist: tqdm
-Requires-Dist: bioregistry[align] >=0.10.0
-Requires-Dist: pandas
-Requires-Dist: lxml
-Requires-Dist: psycopg2-binary
-Provides-Extra: charts
-Requires-Dist: matplotlib ; extra == 'charts'
-Requires-Dist: seaborn ; extra == 'charts'
-Provides-Extra: slack
-Requires-Dist: slack-sdk ; extra == 'slack'
-Provides-Extra: twitter
-Requires-Dist: tweepy ; extra == 'twitter'
-Provides-Extra: web
-Requires-Dist: flask ; extra == 'web'
-Requires-Dist: bootstrap-flask ; extra == 'web'
-
-<p align="center">
-  <img src="https://github.com/biopragmatics/bioversions/raw/main/docs/source/logo.png" height="150">
-</p>
-
-<h1 align="center">
-    Bioversions
-</h1>
-
-<p align="center">
-    <a href="https://pypi.org/project/bioversions">
-        <img alt="PyPI" src="https://img.shields.io/pypi/v/bioversions" />
-    </a>
-    <a href="https://pypi.org/project/bioversions">
-        <img alt="PyPI - Python Version" src="https://img.shields.io/pypi/pyversions/bioversions" />
-    </a>
-    <a href="https://github.com/biopragmatics/bioversions/blob/main/LICENSE">
-        <img alt="PyPI - License" src="https://img.shields.io/pypi/l/bioversions" />
-    </a>
-    <a href="https://zenodo.org/badge/latestdoi/318852276">
-        <img src="https://zenodo.org/badge/318852276.svg" alt="DOI" />
-    </a>
-    <a href="https://github.com/psf/black">
-        <img src="https://img.shields.io/badge/code%20style-black-000000.svg" alt="Code style: black">
-    </a>
-    <a href="https://github.com/biopragmatics/bioregistry"$>
-        <img alt="Powered by the Bioregistry" src="https://img.shields.io/static/v1?label=Powered%20by&message=Bioregistry&color=BA274A&style=flat&logo=image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACgAAAAoCAYAAACM/rhtAAAACXBIWXMAAAEnAAABJwGNvPDMAAAAGXRFWHRTb2Z0d2FyZQB3d3cuaW5rc2NhcGUub3Jnm+48GgAACi9JREFUWIWtmXl41MUZxz/z291sstmQO9mQG0ISwHBtOOSwgpUQhApWgUfEowKigKI81actypaqFbWPVkGFFKU0Vgs+YgvhEAoqEUESrnDlEEhCbkLYJtlkk9399Y/N/rKbzQXt96+Zed+Z9/t7Z+adeecnuA1s5yFVSGrLOAf2qTiEEYlUZKIAfYdKE7KoBLkQSc4XgkPfXxz/owmT41ZtiVtR3j94eqxQq5aDeASIvkVb12RBtt0mb5xZsvfa/5XgnqTMcI3Eq7IQjwM+7jJJo8YvNhK/qDBUOl8A7JZWWqqu01Jeg6Pd1nW4NuBjjax6eWrRruv/M8EDqTMflmXeB0Jcbb6RIRhmTCJ0ymgC0wYjadTd9nW0tWMu+In63NNU7c3FWtvgJpXrZVlakVGU8/ltEcwzGjU3miI/ABa72vwTB5K45AEi7x2PUEl9fZsHZLuDmgPHuLJpJ82lle6iTSH6mpXp+fnt/Sa4yzhbp22yfwFkgnMaBy17kPhFmQh1997qLxztNkq35XB505fINtf0iz1WvfTQ7Pxdlj4Jdnjuny5yvpEhjHh7FQOGD/YyZi4owS86HJ+QQMDpJaBf3jUXlHD21+8q0y4LDppV/vfNO7+jzV3Pa6SOac0E8I8fSPonpm7JAVR+eRhzwU/Ofj+e49tpT/HdtGXcyLvQJ8HAtCTGfmJCF2dwfpTMz4NszX/uqqdyr+xPyVwoEK+C03PGrDX4GkJ7NBJ+txH/hCgAit7cRlNxOY62dmzmZgwzJvZJUh2gI/xnRmoOHsfe3AqQ/kho0qXs+pLzLh3FgwdT54YKxLsAQq0mbf1zHuTsltZejemHJSrlgGGDPGTXc09zdM5qTi59jZbKOg+Zb1QYI95+XokEQogPDifPDnPJFQ8uCkl8FyGmACQtn4dhxp3KINX7jnHi0ZeJnT8dla8Plbu+48zzfyJ08kh8ggIACB4zlIAhsURm3EnML6eB6Fzep1a+SUt5DS2VddTs+4GQccPRhgV1kowIQRaChhMXAPxkIev/Vl+8R/HgnqTMmI4gjH/iQOIXZSqdzQUlXDB9RPyi+1DrdVx67WMursvCkDERXYxB0ROSIOKecURMG+tBzkXAhbYbZk6teNPLkwmPzUIX71wuMiw+MHx2nEJQrWIFHSdE4pIHlFDisLZxYe1HhIwfTtLK+RSu30rVnlxGvrOapOcW9DsW3vH6CgKS4zxIXlz3Fw8dSaMmcfEcV9XHYbc/DSCZMEkgFoJzY0TeO17pVL7jANbaBoauWUJlTi4VOw+T9sazBKYl0ZB/qV/kALThQRi3vOJB0lpzw0vPMONOtOHOqRcyi7bzkEqanJo3HogBMGROUrziaGundGsOsQsyUPn6UPx2NvELZxIybhinn3uLyx9uVwaW7XbqjxdQmr2X0uy93Dh+Dtlu9zCu9vdj1PsvEWwcii7OwJAXFnoRFCoVhoxJrmr0gOQWo9qBfaorXodOHq0o1x8roN3cSMyC6ZT942uQBIlL53Jl804sV6oY9/fXAGg4WcjFdZuxlFV7GNPFRzFs7VKCRiV7ejJrTa/eDr1rFKXZOQCocEyTgHQAyUdD4B2d4cF8pohg4zC0YUFU7z5C9Jy7sVvbKPtsH6GT0tCGBtFwspBTz/zRixyApbSKk8te5+aZ4l4JdUVQWpIScmQhjGocUjJCRhcTieSjURQTF89FtttpuVaLpaya8Knp1B3OQ5Zlag/nU//9cmScS6EnONrauWjazIQv3kCoVD3quUPS+uAXHU7z1SpATpEQchSA78AwD0WVnxa1XkdjURlCJRGQHMfN/EuEjk9jyr4NRN47Hltjc58Gm0sraTjZ/w3l5BLuKkZJdFzT1f5+3Sq3NZjRDNAjaX1orb2BX2wEmkA9fvGGbvW7Q+OlUu+2wlIqdx+h3dzkJVPrda5iQJ93p+DRqcQ/PhsAw8xJ6AfHdkhuIVvoEribLl/jxKOv4Gi34T8omgnb1yOk7sdTA01AiK3J6yoGgP+gaPwHOdOP6LlTlXb3mNYXAlI8da9/e0pJBZovV2BrakYzQK/I3bg0SsiiCqClqs/0wAPB6UOVo6k3+CdEETwm1aPtP+dLlLJPSKAHOYDWCoVLlYTkKAKcCU4vO7IrhErFsLVLPXZ+V0haDcN+v8xjB9strdQfPavUA0ckefRxWNuwVNS6rBRKQB44r+Lmc5f7TRAgaFQyYzb9Dv/4gd18ASQ8/gsC0zwJNJVcw97aeWmOcDtaAW6eLXZLBchTC8EhWXbW6o+cInhMipetuu9OUvTWNnwNodzx+krlvAQIGjmECV+spyH/Ak3F5QDok+OoPXicip2HiJiWTuH6rQx6eh7BxlT0STH4xUbSUl6Df/xAIqaO9bBVn3taKUuy/ZAwYZImpvx4FYjVRgQzOec9r1vK0TmrldMiIDkO45ZXegxLLrRW13P0/heQHQ4CUhIYvfElNIHOtWaztNJ4qZQBqfFKLg3OMz135rNY624ClB0tHJcomTA5ZMGnANbaBmoOHPMy5hvZebNuLCoj71frXIN0i9pDJzj24IsIlUTCo7NI3/KyQg5ArfMleEyKBzmA6r1HO8eV+dSEySEB2G3yRpwZP1c2f+n1GjB07RIlcwNoKi7j3G839EhQF2cg6fmHmbznPRKevJ/GorIedV1wtLVzJesrV9WqQtoIHRfWjreSjwGar1ZRui3Ho7PfwHBGb3jRg6S1roGeoIuNJGBIPKV/zSF31irOrn4HXAu9B1zduhtLecelQxZZ9xTtrgC342Df8IwQyaYqBMKEWo0xaw1BI4d4DNJSWcfF32fRWnuD5NWPEDZ5lIe8NDuHq1v+ha2xGdkho4szYJg1hbj501EH6OgJ5oIS8hf/oWPm5HqNrE51vdt4nC/7k+9bIIT8GYA2Ipixn5jwjQrrZsju0XT5GubTRfiEBqFPisUvOrzPPi0VdeQ9YcJ63bWmxbzphTk7XHKvA/DrlJkfAU+Bcy2N+fA3vZK0WVoxny4idOKIfn+IO7lTz7zRObWCjdMv7VnhruOV9dws9F8u4CsAS1k1J54wYS4o6arWaaS8hvLP998yuZtnisl7wuROLkdjsKzqqtfL45FjB8gzwZnIJy6dS8Jjs3p8ausvHG3tXN26mytZO5W8Rcjsbg1Qze/X45ELHY9I7wHLXG26+CgSl8zFkDGh3zdkF2S7nep9PzhzmnK3FEGwUWOwrJr6zTdeL529EnRhf3LmfCHEBkBZiNrwIAwZkwi9a5Qzh9D6dNvXYW3jZkEJ9UdOOYPwdY/gXgdiufuGuC2C4Hy3kWXrOhmeBLQeA6jV6GLC8Y0KR613Hn+2phZaK69jqah1P/hdsCKLLIfGtnbG+f3eyfHtEHTh38mzom2SY4WQWQjE9tnBE+XIZKuQNrqCcH9wSwRdMGGSJiTnpatwTJOFMIKcgvPVX/kNIcM1gSgC8iTZfii3aEL+7fyG+C+6O8izl1GE5gAAAABJRU5ErkJggg==" />
-    </a>
-</p>
-
-What's the current version for each biological database?
-
-A daily updated static listing of all current versions (that are incorporated) can be found at
-https://biopragmatics.github.io/bioversions.
-
-## 🚀 Installation
-
-```bash
-$ pip install bioversions
-```
-
-## 💪 Usage
-
-```python
-import bioversions
-
-assert bioversions.get_version('biogrid') == '4.2.192', 'This was true on Dec 5th, 2020!'
-
-# If you want more information, use the resolve() function
-bioversion = bioversions.resolve('biogrid')
-assert bioversion.version == '4.2.192'
-```
-
-By default, the results are cached and only refreshed once per day with the help
-of [`cachier`](https://github.com/shaypal5/cachier). The cache is stored in `~/.data/bioversions`. The cache location
-can be overridden by setting the
-`BIOVERSIONS_HOME` environment variable via [`pystow`](https://github.com/cthoyt/pystow).
-
-## 🌐 Web Application
-
-While https://biopragmatics.github.io/bioversions provides a daily updated static listing of the database, you can run a
-dynamic version with an API from your shell with:
-
-```bash
-$ bioversions web
-```
-
-Options can be listed with `bioversions web --help`.
-
-You can navigate to http://localhost:5000 to see all versions as HTML or programmatically resolve given databases with
-the
-`http://localhost:5000/database/<name>` endpoint like in the following:
-
-```python
-import requests
-
-res = requests.get('http://localhost:5000/database/biogrid').json()
-assert res['success']
-assert res['result']['name'] == 'BioGRID'
-assert res['result']['version'] == '4.2.192', 'This was true on Dec 5th, 2020!'
-```
-
-## CLI Usage
-
-You can use `bioversions get` to incorporate the latest versions in your shell scripts or REPL usage like in:
-
-```bash
-$ wget "https://downloads.thebiogrid.org/Download/BioGRID/Release-Archive/BIOGRID-$(bioversions get biogrid)/BIOGRID-ALL-$(bioversions get biogrid).mitab.zip"
-```
-
-## 🙏 Contributing
-
-To add more databases to the list, you can create a new submodule of
-`bioversions.sources` and extend the `bioversions.utils.Getter` class to identify the most recent version for your
-target database. See
-`bioversions.sources.biogrid` as an example.
-
-## 👋 Attribution
-
-### ⚖️ License
-
-Code is licensed under the MIT License.
-
-### 🎁 Support
-
-The Bioversions service was developed by the [INDRA Lab](https://indralab.github.io), a part of the
-[Laboratory of Systems Pharmacology](https://hits.harvard.edu/the-program/laboratory-of-systems-pharmacology/about/)
-and the [Harvard Program in Therapeutic Science (HiTS)](https://hits.harvard.edu)
-at [Harvard Medical School](https://hms.harvard.edu/).
-
-### 💰 Funding
-
-The development of the Bioregistry is funded by the DARPA Young Faculty Award W911NF2010255 (PI:
-Benjamin M. Gyori).

bioversions-0.5.320.dist-info/RECORD

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-bioversions-0.5.320.dist-info/RECORD,,

bioversions-0.5.320.dist-info/WHEEL

@@ -1,5 +0,0 @@
-Wheel-Version: 1.0
-Generator: bdist_wheel (0.42.0)
-Root-Is-Purelib: true
-Tag: py3-none-any
-

bioversions-0.5.320.dist-info/top_level.txt

@@ -1 +0,0 @@
-bioversions