bioversions 0.5.320__py3-none-any.whl → 0.5.376__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bioversions/sources/__init__.py +13 -0
- bioversions/sources/chembl.py +1 -0
- bioversions/sources/civic.py +41 -0
- bioversions/sources/ensembl.py +3 -3
- bioversions/sources/guidetopharmacology.py +1 -0
- bioversions/sources/icd10.py +32 -0
- bioversions/sources/icd11.py +32 -0
- bioversions/sources/icf.py +32 -0
- bioversions/sources/kegg.py +2 -1
- bioversions/sources/mirbase.py +1 -0
- bioversions/sources/omim.py +34 -0
- bioversions/sources/rhea.py +1 -4
- bioversions/sources/rxnorm.py +1 -1
- bioversions/utils.py +13 -4
- bioversions/version.py +1 -1
- {bioversions-0.5.320.dist-info → bioversions-0.5.376.dist-info}/METADATA +1 -1
- {bioversions-0.5.320.dist-info → bioversions-0.5.376.dist-info}/RECORD +21 -16
- {bioversions-0.5.320.dist-info → bioversions-0.5.376.dist-info}/WHEEL +1 -1
- {bioversions-0.5.320.dist-info → bioversions-0.5.376.dist-info}/LICENSE +0 -0
- {bioversions-0.5.320.dist-info → bioversions-0.5.376.dist-info}/entry_points.txt +0 -0
- {bioversions-0.5.320.dist-info → bioversions-0.5.376.dist-info}/top_level.txt +0 -0
bioversions/sources/__init__.py
CHANGED
@@ -16,6 +16,7 @@ from .cellosaurus import CellosaurusGetter
|
|
16
16
|
from .chebi import ChEBIGetter
|
17
17
|
from .chembl import ChEMBLGetter
|
18
18
|
from .chemidplus import ChemIDplusGetter
|
19
|
+
from .civic import CiVICGetter
|
19
20
|
from .complexportal import ComplexPortalGetter
|
20
21
|
from .daily import NCBIGeneGetter
|
21
22
|
from .depmap import DepMapGetter
|
@@ -29,6 +30,9 @@ from .flybase import FlybaseGetter
|
|
29
30
|
from .guidetopharmacology import GuideToPharmacologyGetter
|
30
31
|
from .hgnc import HGNCGetter
|
31
32
|
from .homologene import HomoloGeneGetter
|
33
|
+
from .icd10 import ICD10Getter
|
34
|
+
from .icd11 import ICD11Getter
|
35
|
+
from .icf import ICFGetter
|
32
36
|
from .intact import IntActGetter
|
33
37
|
from .interpro import InterProGetter
|
34
38
|
from .itis import ITISGetter
|
@@ -42,6 +46,7 @@ from .ncit import NCItGetter
|
|
42
46
|
from .npass import NPASSGetter
|
43
47
|
from .obo import iter_obo_getters
|
44
48
|
from .ols import extend_ols_getters
|
49
|
+
from .omim import OMIMGetter
|
45
50
|
from .oncotree import OncoTreeGetter
|
46
51
|
from .pathbank import PathBankGetter
|
47
52
|
from .pathwaycommons import PathwayCommonsGetter
|
@@ -127,6 +132,11 @@ def get_getters() -> List[Type[Getter]]:
|
|
127
132
|
RGDGetter,
|
128
133
|
CellosaurusGetter,
|
129
134
|
MGIGetter,
|
135
|
+
OMIMGetter,
|
136
|
+
ICFGetter,
|
137
|
+
ICD10Getter,
|
138
|
+
ICD11Getter,
|
139
|
+
CiVICGetter,
|
130
140
|
]
|
131
141
|
getters.extend(iter_obo_getters())
|
132
142
|
extend_ols_getters(getters)
|
@@ -143,6 +153,9 @@ def get_getter_dict() -> Mapping[str, Type[Getter]]:
|
|
143
153
|
rv[norm(getter.bioregistry_id)] = getter
|
144
154
|
rv[getter.name] = getter
|
145
155
|
rv[norm(getter.name)] = getter
|
156
|
+
for pp in getter.collection or []:
|
157
|
+
rv[pp] = getter
|
158
|
+
rv[norm(pp)] = getter
|
146
159
|
return rv
|
147
160
|
|
148
161
|
|
bioversions/sources/chembl.py
CHANGED
@@ -23,6 +23,7 @@ class ChEMBLGetter(Getter):
|
|
23
23
|
homepage_fmt = "ftp://ftp.ebi.ac.uk/pub/databases/chembl/ChEMBLdb/releases/chembl_{version}"
|
24
24
|
date_fmt = "%d/%m/%Y"
|
25
25
|
version_type = VersionType.sequential
|
26
|
+
collection = ["chembl", "chembl.target", "chembl.compound", "chembl.cell"]
|
26
27
|
|
27
28
|
def get(self):
|
28
29
|
"""Get the latest ChEMBL version number."""
|
@@ -0,0 +1,41 @@
|
|
1
|
+
"""Get the version for CiVIC."""
|
2
|
+
|
3
|
+
import requests
|
4
|
+
|
5
|
+
from bioversions.utils import Getter, VersionType
|
6
|
+
|
7
|
+
URL = "https://civicdb.org/releases/main"
|
8
|
+
API = "https://civicdb.org/api/graphql"
|
9
|
+
GRAPHQL_QUERY = """\
|
10
|
+
query dataReleases {
|
11
|
+
dataReleases {
|
12
|
+
geneTsv {
|
13
|
+
filename
|
14
|
+
path
|
15
|
+
}
|
16
|
+
name
|
17
|
+
}
|
18
|
+
}
|
19
|
+
"""
|
20
|
+
# see https://griffithlab.github.io/civic-v2/#query-dataReleases
|
21
|
+
# and https://griffithlab.github.io/civic-v2/#definition-DownloadableFile
|
22
|
+
|
23
|
+
|
24
|
+
class CiVICGetter(Getter):
|
25
|
+
"""A getter for CiVIC."""
|
26
|
+
|
27
|
+
name = "CiVIC"
|
28
|
+
date_fmt = "%d-%b-%Y"
|
29
|
+
version_type = VersionType.date
|
30
|
+
homepage = "https://civicdb.org"
|
31
|
+
collection = ["civic.gid", "civic.eid"]
|
32
|
+
|
33
|
+
def get(self):
|
34
|
+
"""Get the latest ChEMBL version number."""
|
35
|
+
res = requests.post(API, json={"query": GRAPHQL_QUERY})
|
36
|
+
# 0 element is always nightly, 1 is latest
|
37
|
+
return res.json()["data"]["dataReleases"][1]["name"]
|
38
|
+
|
39
|
+
|
40
|
+
if __name__ == "__main__":
|
41
|
+
CiVICGetter.print()
|
bioversions/sources/ensembl.py
CHANGED
@@ -12,17 +12,17 @@ URL = "https://useast.ensembl.org/index.html"
|
|
12
12
|
|
13
13
|
|
14
14
|
class EnsemblGetter(Getter):
|
15
|
-
"""A getter for
|
15
|
+
"""A getter for Ensembl."""
|
16
16
|
|
17
17
|
bioregistry_id = "ensembl"
|
18
18
|
name = "Ensembl"
|
19
19
|
homepage_fmt = "https://www.ensembl.org"
|
20
|
-
date_fmt = "%
|
20
|
+
date_fmt = "%B %Y"
|
21
21
|
version_type = VersionType.sequential
|
22
22
|
|
23
23
|
def get(self):
|
24
24
|
"""Get the latest Ensembl version number."""
|
25
|
-
soup = get_soup(URL
|
25
|
+
soup = get_soup(URL)
|
26
26
|
manifest = soup.find(**{"class": "box-header"}).text
|
27
27
|
version, date = manifest.rstrip(")").split("(", 1)
|
28
28
|
return dict(version=version.split()[-1], date=date)
|
@@ -23,6 +23,7 @@ class GuideToPharmacologyGetter(Getter):
|
|
23
23
|
homepage_fmt = "https://www.guidetopharmacology.org/DATA/public_iuphardb_v{version}.zip"
|
24
24
|
date_fmt = "%Y-%m-%d"
|
25
25
|
version_type = VersionType.year_minor
|
26
|
+
collection = ["iuphar.family", "iuphar.ligand", "iuphar.receptor"]
|
26
27
|
|
27
28
|
def get(self) -> Dict[str, str]:
|
28
29
|
"""Get the latest Guide to Pharmacology version number."""
|
@@ -0,0 +1,32 @@
|
|
1
|
+
# -*- coding: utf-8 -*-
|
2
|
+
|
3
|
+
"""A getter for ICD10."""
|
4
|
+
|
5
|
+
import requests
|
6
|
+
|
7
|
+
from bioversions.utils import Getter, VersionType
|
8
|
+
|
9
|
+
__all__ = [
|
10
|
+
"ICD10Getter",
|
11
|
+
]
|
12
|
+
|
13
|
+
URL = "https://icd.who.int/browse10/"
|
14
|
+
|
15
|
+
|
16
|
+
class ICD10Getter(Getter):
|
17
|
+
"""A getter for ICD10."""
|
18
|
+
|
19
|
+
bioregistry_id = "icd10"
|
20
|
+
name = "International Classification of Diseases, 10th Revision"
|
21
|
+
version_type = VersionType.date
|
22
|
+
date_version_fmt = "%Y"
|
23
|
+
|
24
|
+
def get(self) -> str:
|
25
|
+
"""Get the latest ICD10 version number."""
|
26
|
+
response = requests.get(URL, allow_redirects=True)
|
27
|
+
final_url = response.url
|
28
|
+
return final_url[len("https://icd.who.int/browse10/") :].split("/")[0]
|
29
|
+
|
30
|
+
|
31
|
+
if __name__ == "__main__":
|
32
|
+
ICD10Getter.print()
|
@@ -0,0 +1,32 @@
|
|
1
|
+
# -*- coding: utf-8 -*-
|
2
|
+
|
3
|
+
"""A getter for ICD11."""
|
4
|
+
|
5
|
+
import requests
|
6
|
+
|
7
|
+
from bioversions.utils import Getter, VersionType
|
8
|
+
|
9
|
+
__all__ = [
|
10
|
+
"ICD11Getter",
|
11
|
+
]
|
12
|
+
|
13
|
+
URL = "https://icd.who.int/browse/latest-release/mms/en"
|
14
|
+
|
15
|
+
|
16
|
+
class ICD11Getter(Getter):
|
17
|
+
"""A getter for ICD11."""
|
18
|
+
|
19
|
+
bioregistry_id = "icd11"
|
20
|
+
name = "International Classification of Diseases, 11th Revision"
|
21
|
+
version_type = VersionType.date
|
22
|
+
date_version_fmt = "%Y-%m"
|
23
|
+
|
24
|
+
def get(self) -> str:
|
25
|
+
"""Get the latest ICD11 version number."""
|
26
|
+
response = requests.get(URL, allow_redirects=True)
|
27
|
+
final_url = response.url
|
28
|
+
return final_url[len("https://icd.who.int/browse/") :].split("/")[0]
|
29
|
+
|
30
|
+
|
31
|
+
if __name__ == "__main__":
|
32
|
+
ICD11Getter.print()
|
@@ -0,0 +1,32 @@
|
|
1
|
+
# -*- coding: utf-8 -*-
|
2
|
+
|
3
|
+
"""A getter for ICF."""
|
4
|
+
|
5
|
+
import requests
|
6
|
+
|
7
|
+
from bioversions.utils import Getter, VersionType
|
8
|
+
|
9
|
+
__all__ = [
|
10
|
+
"ICFGetter",
|
11
|
+
]
|
12
|
+
|
13
|
+
URL = "https://icd.who.int/browse/latest-release/icf/en"
|
14
|
+
|
15
|
+
|
16
|
+
class ICFGetter(Getter):
|
17
|
+
"""A getter for ICF."""
|
18
|
+
|
19
|
+
bioregistry_id = "icf"
|
20
|
+
name = "International Classification of Functioning, Disability and Health"
|
21
|
+
version_type = VersionType.date
|
22
|
+
date_version_fmt = "%Y-%m"
|
23
|
+
|
24
|
+
def get(self) -> str:
|
25
|
+
"""Get the latest ICF version number."""
|
26
|
+
response = requests.get(URL, allow_redirects=True)
|
27
|
+
final_url = response.url
|
28
|
+
return final_url[len("https://icd.who.int/browse/") :].split("/")[0]
|
29
|
+
|
30
|
+
|
31
|
+
if __name__ == "__main__":
|
32
|
+
ICFGetter.print()
|
bioversions/sources/kegg.py
CHANGED
@@ -5,6 +5,7 @@
|
|
5
5
|
from typing import Mapping
|
6
6
|
|
7
7
|
from bioversions.utils import Getter, VersionType, get_soup
|
8
|
+
import bioregistry
|
8
9
|
|
9
10
|
__all__ = [
|
10
11
|
"KEGGGetter",
|
@@ -16,10 +17,10 @@ URL = "https://www.kegg.jp/kegg/docs/relnote.html"
|
|
16
17
|
class KEGGGetter(Getter):
|
17
18
|
"""A getter for KEGG."""
|
18
19
|
|
19
|
-
bioregistry_id = "kegg.pathway"
|
20
20
|
name = "KEGG"
|
21
21
|
date_fmt = "%B %d, %Y"
|
22
22
|
version_type = VersionType.semver_minor
|
23
|
+
collection = ["kegg", *bioregistry.get_has_parts("kegg")]
|
23
24
|
|
24
25
|
def get(self) -> Mapping[str, str]:
|
25
26
|
"""Get the latest KEGG version number."""
|
bioversions/sources/mirbase.py
CHANGED
@@ -18,6 +18,7 @@ class MirbaseGetter(Getter):
|
|
18
18
|
name = "miRBase"
|
19
19
|
homepage_fmt = "https://www.mirbase.org/download/PREVIOUS_RELEASES/{version}"
|
20
20
|
version_type = VersionType.semver_minor
|
21
|
+
collection = ["mirbase", "mirbase.family", "mirbase.mature"]
|
21
22
|
|
22
23
|
def get(self):
|
23
24
|
"""Get the latest miRBase version number."""
|
@@ -0,0 +1,34 @@
|
|
1
|
+
# -*- coding: utf-8 -*-
|
2
|
+
|
3
|
+
"""A getter for the OMIM."""
|
4
|
+
|
5
|
+
|
6
|
+
from bioversions.utils import Getter, VersionType, get_soup
|
7
|
+
|
8
|
+
__all__ = [
|
9
|
+
"OMIMGetter",
|
10
|
+
]
|
11
|
+
|
12
|
+
|
13
|
+
class OMIMGetter(Getter):
|
14
|
+
"""A getter for OMIM."""
|
15
|
+
|
16
|
+
name = "Online Mendelian Inheritance in Man"
|
17
|
+
date_version_fmt = "%B %d, %Y"
|
18
|
+
version_type = VersionType.date
|
19
|
+
collection = ["omim.ps", "omim"]
|
20
|
+
|
21
|
+
def get(self) -> str:
|
22
|
+
"""Get the latest OMIM version number."""
|
23
|
+
soup = get_soup("https://omim.org/")
|
24
|
+
for tag in soup.find_all("h5"):
|
25
|
+
text = tag.text.strip()
|
26
|
+
if text.startswith("Updated"):
|
27
|
+
rv = text[len("Updated") :].strip()
|
28
|
+
rv = rv.replace("nd", "").replace("st", "").replace("rd", "").replace("th", "")
|
29
|
+
return rv
|
30
|
+
raise ValueError
|
31
|
+
|
32
|
+
|
33
|
+
if __name__ == "__main__":
|
34
|
+
OMIMGetter.print()
|
bioversions/sources/rhea.py
CHANGED
@@ -3,7 +3,6 @@
|
|
3
3
|
"""A getter for Rhea."""
|
4
4
|
|
5
5
|
import requests
|
6
|
-
import requests_ftp
|
7
6
|
|
8
7
|
from bioversions.utils import Getter, VersionType
|
9
8
|
|
@@ -11,9 +10,7 @@ __all__ = [
|
|
11
10
|
"RheaGetter",
|
12
11
|
]
|
13
12
|
|
14
|
-
|
15
|
-
|
16
|
-
VERSION_FILE = "ftp://ftp.expasy.org/databases/rhea/rhea-release.properties"
|
13
|
+
VERSION_FILE = "https://ftp.expasy.org/databases/rhea/rhea-release.properties"
|
17
14
|
|
18
15
|
|
19
16
|
class RheaGetter(Getter):
|
bioversions/sources/rxnorm.py
CHANGED
@@ -24,7 +24,7 @@ class RxNormGetter(Getter):
|
|
24
24
|
def get(self) -> datetime:
|
25
25
|
"""Get the latest RxNorm version number."""
|
26
26
|
soup = get_soup(URL)
|
27
|
-
raw_version = soup.find("th", {"class": "current"}).contents[2]
|
27
|
+
raw_version = soup.find("th", {"class": "current"}).contents[2].strip()
|
28
28
|
raw_fmt = "%B %d, %Y"
|
29
29
|
return datetime.strptime(raw_version, raw_fmt)
|
30
30
|
|
bioversions/utils.py
CHANGED
@@ -6,7 +6,7 @@ import datetime
|
|
6
6
|
import enum
|
7
7
|
import ftplib
|
8
8
|
import os
|
9
|
-
from typing import Any, ClassVar, Mapping, Optional, Union
|
9
|
+
from typing import Any, ClassVar, List, Mapping, Optional, Union
|
10
10
|
|
11
11
|
import bioregistry
|
12
12
|
import pydantic
|
@@ -47,7 +47,9 @@ def norm(s: str) -> str:
|
|
47
47
|
return s.lower().replace(" ", "").replace("-", "").replace(".", "")
|
48
48
|
|
49
49
|
|
50
|
-
def get_soup(
|
50
|
+
def get_soup(
|
51
|
+
url: str, verify: bool = True, timeout: Optional[int] = None, user_agent: Optional[str] = None
|
52
|
+
) -> BeautifulSoup:
|
51
53
|
"""Get a beautiful soup parsed version of the given web page.
|
52
54
|
|
53
55
|
:param url: The URL to download and parse with BeautifulSoup
|
@@ -55,9 +57,13 @@ def get_soup(url: str, verify: bool = True, timeout: Optional[int] = None) -> Be
|
|
55
57
|
except for Ensembl, which makes a big pain
|
56
58
|
:param timeout: How many integer seconds to wait for a response?
|
57
59
|
Defaults to 15 if none given.
|
60
|
+
:param user_agent: A custom user-agent to set, e.g., to avoid anti-crawling mechanisms
|
58
61
|
:returns: A BeautifulSoup object
|
59
62
|
"""
|
60
|
-
|
63
|
+
headers = {}
|
64
|
+
if user_agent:
|
65
|
+
headers["User-Agent"] = user_agent
|
66
|
+
res = requests.get(url, verify=verify, timeout=timeout or 15, headers=headers)
|
61
67
|
soup = BeautifulSoup(res.text, features="html.parser")
|
62
68
|
return soup
|
63
69
|
|
@@ -186,6 +192,9 @@ class Getter(metaclass=MetaGetter):
|
|
186
192
|
date: ClassVar[str]
|
187
193
|
homepage: ClassVar[str]
|
188
194
|
|
195
|
+
#: Prefixes this getter works for
|
196
|
+
collection: ClassVar[Optional[List[str]]] = None
|
197
|
+
|
189
198
|
def get(self) -> Union[str, Mapping[str, str], datetime.datetime]:
|
190
199
|
"""Get the latest of this database."""
|
191
200
|
raise NotImplementedError
|
@@ -270,7 +279,7 @@ class OBOFoundryGetter(Getter):
|
|
270
279
|
|
271
280
|
def get(self) -> str:
|
272
281
|
"""Get the OBO version."""
|
273
|
-
url = f"
|
282
|
+
url = f"https://purl.obolibrary.org/obo/{self.key}.obo"
|
274
283
|
return self.process(get_obo_version(url))
|
275
284
|
|
276
285
|
def process(self, version: str) -> str:
|
bioversions/version.py
CHANGED
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
2
2
|
Name: bioversions
|
3
|
-
Version: 0.5.
|
3
|
+
Version: 0.5.376
|
4
4
|
Summary: What's the current version for each biological database?
|
5
5
|
Home-page: https://github.com/biopragmatics/bioversions
|
6
6
|
Download-URL: https://github.com/biopragmatics/bioversions/releases
|
@@ -5,19 +5,20 @@ bioversions/cli.py,sha256=vFwSyuWWFly07g_9hcd_70pwKV7U-OZPqRWhn4FxIjU,1589
|
|
5
5
|
bioversions/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
6
6
|
bioversions/slack_client.py,sha256=42kl4TbjtXimVRULcBfe8i3pdJLScEPvJr1vw72tv-4,1271
|
7
7
|
bioversions/twitter_client.py,sha256=TQhsdp6avlzoZLoZlndJlwsYhIYI-uabehZJ1W1mNuY,1353
|
8
|
-
bioversions/utils.py,sha256=
|
9
|
-
bioversions/version.py,sha256=
|
8
|
+
bioversions/utils.py,sha256=6ygaoe5rRArtrCXHrVygpl2cD7Otrbs4D1rADmpXDrA,10425
|
9
|
+
bioversions/version.py,sha256=oh3AQZAHf44yxVc5pVNN8EWl5se-Kf4U_Sn19aCW3d0,645
|
10
10
|
bioversions/wsgi.py,sha256=Z1HYFmnrWKNGwHq4R4DRfBuLzAEAAZ5UfHjvJUpnDfs,826
|
11
11
|
bioversions/resources/__init__.py,sha256=0E1yGGT5SztSGEa30Tai4wCUki4nqfynqCSNAvjzEOk,1173
|
12
12
|
bioversions/resources/update.py,sha256=21LprPktMKXdFI7llKjn7gsAQq01TGSKFbWQEhhwDJ0,3215
|
13
|
-
bioversions/sources/__init__.py,sha256=
|
13
|
+
bioversions/sources/__init__.py,sha256=gxSQDIbe0bURXXEvQmD-7QWOEa8gCubr62CSUH-nbNQ,5962
|
14
14
|
bioversions/sources/antibodyregistry.py,sha256=VIgnYZ_Jtcx0u19X60Ee7qTqDgbub5C2EBtK_Bz7Twc,705
|
15
15
|
bioversions/sources/bigg.py,sha256=qPBpX8qap8MlnlcntWO30jIgWD4c9RV57cKp_EZhnE0,672
|
16
16
|
bioversions/sources/biogrid.py,sha256=k32iXtno-Q2M2SVDX_S-22_B1rwSTzQNZwJCL9nwoW4,759
|
17
17
|
bioversions/sources/cellosaurus.py,sha256=x3kAjDAoy2YQY3ZroiZxdsh7_-AQg1bWTWa-0y23uX0,986
|
18
18
|
bioversions/sources/chebi.py,sha256=TRQ7DZ-Dz8b3mNaKRe52QVfQFahvTwVsBQjXapxBl_M,856
|
19
|
-
bioversions/sources/chembl.py,sha256=
|
19
|
+
bioversions/sources/chembl.py,sha256=LxOFFAgSYg4v3AkvAseHWAeAZZH8klRZv8HpD-rebBY,1487
|
20
20
|
bioversions/sources/chemidplus.py,sha256=USdDBPGcNULiw19ZFzz5QFIVzG_h80IaFbxsJH4Fb1w,1207
|
21
|
+
bioversions/sources/civic.py,sha256=1uGaTy2ipZ2Nm5Nn_Ojv6biJfLr3sB3djc6AmOT3sO0,970
|
21
22
|
bioversions/sources/complexportal.py,sha256=SPJ3ryJNtXwvArtHaeeWCSau6uVBJTDxPX6XPvKmDlY,696
|
22
23
|
bioversions/sources/daily.py,sha256=mq8NLnhRRDjTzwGQl9LxCBiO6BSWyGOJcfyg7qqNsno,281
|
23
24
|
bioversions/sources/depmap.py,sha256=EjpScMRwqItvitso57ah3f53bkWbTK0bjLWOBr4ym1E,654
|
@@ -25,25 +26,29 @@ bioversions/sources/dgi.py,sha256=2TSzl4XeTUt_I8Keuu51NuuShhhtiITHKMCbp1wf6uo,97
|
|
25
26
|
bioversions/sources/disgenet.py,sha256=iRd1K2o_m8xSlJrWoSD8-plnTS1nO0Ur_OCCRD2V9u8,752
|
26
27
|
bioversions/sources/drugbank.py,sha256=ZZ2yw34bRcLFT6n_Ygn1daGWk_oVx4A7ovUKSM_EQek,1005
|
27
28
|
bioversions/sources/drugcentral.py,sha256=EWYatYEqZbwjH-0lUXYEfe5P5VNHsNJAtNDlSP_OuZM,1117
|
28
|
-
bioversions/sources/ensembl.py,sha256=
|
29
|
+
bioversions/sources/ensembl.py,sha256=BHssnbJMI-jONB8W1mKERYsccRmIETI0NeWLnTTiDdk,760
|
29
30
|
bioversions/sources/expasy.py,sha256=EQXDz1LJSc0J-BE5Gy5tI-T4e6j4D5jid6c6ajzQjG8,830
|
30
31
|
bioversions/sources/flybase.py,sha256=5S0gI8tULx3sfNVy2O4grvyqIUwI4teS9S6khDh-JzQ,779
|
31
|
-
bioversions/sources/guidetopharmacology.py,sha256=
|
32
|
+
bioversions/sources/guidetopharmacology.py,sha256=B3W5I01v1a0OuvPJB-LHoSYvuJBN_cpXulnGrBs009o,1377
|
32
33
|
bioversions/sources/hgnc.py,sha256=OH8E9dF2oPbh_BshPgKrWSFkYWDq9rj9J7DN06pVFxQ,970
|
33
34
|
bioversions/sources/homologene.py,sha256=_f6SQRXe67t1jqQ6HjQIEOGApPUHLlfHMZojChumWzc,647
|
35
|
+
bioversions/sources/icd10.py,sha256=cfiJcueTr6Z1dIzdP68QeCPlnJhr3Yd3U97TZplR1JI,716
|
36
|
+
bioversions/sources/icd11.py,sha256=EsdUrPxio_VIv9tkPoauxozKY-fdjwesbb5Kh_bijU0,736
|
37
|
+
bioversions/sources/icf.py,sha256=iTWjjScSlKDJZRRi1cKTZyTpP4p5Illv6LoZEvo-PSw,733
|
34
38
|
bioversions/sources/intact.py,sha256=bRBnGm3-PHGdKlyYGkCabzQue9RG2MmF1A3CVF_U9e4,621
|
35
39
|
bioversions/sources/interpro.py,sha256=UELzp1FBKBcul09DiK3eqkHZ31kkBPT4vuDD9A_9hz0,1261
|
36
40
|
bioversions/sources/itis.py,sha256=u9h72y5JijXTprOe1SlaTW0adllj6NNoRP95AwuhzjE,831
|
37
|
-
bioversions/sources/kegg.py,sha256=
|
41
|
+
bioversions/sources/kegg.py,sha256=Kk3S1uhGmzHgSYid1mUo_uDakk8WeUAZUsFap4eDVow,869
|
38
42
|
bioversions/sources/mesh.py,sha256=U3brzrzPjhzgSWxG2MILP-bqIgZpr62ns_izFnZzqe0,807
|
39
43
|
bioversions/sources/mgi.py,sha256=68xCDcnWUckM_GDGW24MjtWwFf0vZHkS0H3NWKwUdr0,866
|
40
|
-
bioversions/sources/mirbase.py,sha256=
|
44
|
+
bioversions/sources/mirbase.py,sha256=5_D4EeB-K64eQ897xOSzoZQYFOiXNqtAugcexzR9oBg,905
|
41
45
|
bioversions/sources/moalmanac.py,sha256=HxrJmOzqVJiHn9FQKCbOlBPCvxBHst1DI420TYERCvU,774
|
42
46
|
bioversions/sources/msigdb.py,sha256=KGYZjjhqm0uUT0Wg_pb5kF9OVW33dgIh2r-yKMBqbWg,803
|
43
47
|
bioversions/sources/ncit.py,sha256=ylubS3ntMyimaZDHFNFrjc2pkDfpyrBkhrl8Dq4duyQ,1064
|
44
48
|
bioversions/sources/npass.py,sha256=-EL6Ej-23cdGKehn8nusP8LJ3z4oRX4ZPPDnjx_ItXQ,739
|
45
49
|
bioversions/sources/obo.py,sha256=n2_Auh0ccu3WKOwq8JqFldzS8-KY0GVC1fReazPLr78,1735
|
46
50
|
bioversions/sources/ols.py,sha256=PqL_CfpS0NxAfo1iSh2shakcnywRl_zfHXBcNrcLdiA,2754
|
51
|
+
bioversions/sources/omim.py,sha256=y586CrSXrwldoiiGOJwL64yAPbJBkwwHCgFNDjsPMYk,856
|
47
52
|
bioversions/sources/oncotree.py,sha256=Z-zZWFeVEfCyZcEMcrdVTcEoHIDfYB-v7oK_iYVSGEI,1026
|
48
53
|
bioversions/sources/pathbank.py,sha256=_oMfaJs02FBJ6kIWHPW-M2euxAn5ylsGKqseRSJ3m2M,718
|
49
54
|
bioversions/sources/pathwaycommons.py,sha256=lLVmJkf3qDuMk316Aia0CzJyp_-ahAASLupaAuQS9iw,686
|
@@ -54,8 +59,8 @@ bioversions/sources/pubchem.py,sha256=wF2cx-VzLCobpTeE0KzzTk6_n7-UFjoOsOkf9u9xBF
|
|
54
59
|
bioversions/sources/reactome.py,sha256=Oy3huY1ihuWmLZqxM92Y44eZQ7DXmVAwGMzTFhqByPg,621
|
55
60
|
bioversions/sources/rfam.py,sha256=sz_9lCGS-h6cTp3d2MCQVRkvlFkjF5mijwj1MfZpRbc,565
|
56
61
|
bioversions/sources/rgd.py,sha256=x7Mks8qp_dE4xWkA7OQu4eM8__oPsr13M-bFd5otcoA,791
|
57
|
-
bioversions/sources/rhea.py,sha256=
|
58
|
-
bioversions/sources/rxnorm.py,sha256=
|
62
|
+
bioversions/sources/rhea.py,sha256=LERbsgy5ZI8Jy5v9r1IXGRBe70_bd8YwBa8a3_uumWg,831
|
63
|
+
bioversions/sources/rxnorm.py,sha256=qZLCiw-HjsyYsFTa4ZtCtLqXcU8LDoxRSEx9YuFp7Ys,1035
|
59
64
|
bioversions/sources/sgd.py,sha256=xLZdpA0WBJVIkgwuLmosVpXo9WBeiqCAA8_4taSrLsA,1109
|
60
65
|
bioversions/sources/slm.py,sha256=nttj-mrzwgosK-Vv3UVlyAI0EX1WkJRFBkGmkTnhdU0,709
|
61
66
|
bioversions/sources/stringdb.py,sha256=6D3rcGGzdkgVOw4refJgjsorkyZuPswTYe4rNT4bQRQ,810
|
@@ -64,9 +69,9 @@ bioversions/sources/uniprot.py,sha256=_rootal_mrESkiXJh3udfr1UGrlzP7CQQIMsa35tyc
|
|
64
69
|
bioversions/sources/unversioned.py,sha256=noHxGmy9cpVv5xegMHouBF6oCbW6CP1jpOeCVdE7Eak,78
|
65
70
|
bioversions/sources/wikipathways.py,sha256=HTva8vsXRQWU6bia83Et4vveo-QhzJS6dDWeu9Syc6c,823
|
66
71
|
bioversions/sources/zfin.py,sha256=D7csziZ3UsW8dncm6XKA0t3x6XB4cFbG9PTYcT-g2bg,708
|
67
|
-
bioversions-0.5.
|
68
|
-
bioversions-0.5.
|
69
|
-
bioversions-0.5.
|
70
|
-
bioversions-0.5.
|
71
|
-
bioversions-0.5.
|
72
|
-
bioversions-0.5.
|
72
|
+
bioversions-0.5.376.dist-info/LICENSE,sha256=GzLA83qaovFgoZWRYwaAmY-lkHZyDySJHU-YKE9NdVs,1076
|
73
|
+
bioversions-0.5.376.dist-info/METADATA,sha256=8cGT5rl0j48Bed87QrSVuL_o5I0qt3Y1VruuCx-HnT4,9443
|
74
|
+
bioversions-0.5.376.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
|
75
|
+
bioversions-0.5.376.dist-info/entry_points.txt,sha256=A3qrS-nvKNZPZWQbYlmsmiDTge524C4yR-arRJwdHls,53
|
76
|
+
bioversions-0.5.376.dist-info/top_level.txt,sha256=0QO2OEUMchj5GSlWEFi0cvUpsm4b_uwuuvr6uSEmfY0,12
|
77
|
+
bioversions-0.5.376.dist-info/RECORD,,
|
File without changes
|
File without changes
|
File without changes
|