biotite 1.6.0__cp314-cp314-win_amd64.whl

biotite-1.6.0.dist-info/METADATA

@@ -0,0 +1,162 @@
+Metadata-Version: 2.4
+Name: biotite
+Version: 1.6.0
+Summary: A comprehensive library for computational molecular biology
+Project-URL: homepage, https://www.biotite-python.org
+Project-URL: repository, https://github.com/biotite-dev/biotite
+Project-URL: documentation, https://www.biotite-python.org
+Author: The Biotite contributors
+License-Expression: BSD-3-Clause
+License-File: LICENSE.rst
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: Natural Language :: English
+Classifier: Operating System :: MacOS
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Requires-Python: >=3.11
+Requires-Dist: biotraj<2.0,>=1.0
+Requires-Dist: msgpack>=0.5.6
+Requires-Dist: networkx>=2.0
+Requires-Dist: numpy>=1.25
+Requires-Dist: packaging>=24.0
+Requires-Dist: requests>=2.12
+Provides-Extra: lint
+Requires-Dist: numpydoc==1.8.0; extra == 'lint'
+Requires-Dist: ruff==0.9.7; extra == 'lint'
+Provides-Extra: test
+Requires-Dist: pytest; extra == 'test'
+Requires-Dist: pytest-codspeed; extra == 'test'
+Description-Content-Type: text/x-rst
+
+.. image:: https://img.shields.io/pypi/v/biotite.svg
+   :target: https://pypi.python.org/pypi/biotite
+   :alt: Biotite at PyPI
+.. image:: https://img.shields.io/pypi/pyversions/biotite.svg
+   :alt: Python version
+.. image:: https://github.com/biotite-dev/biotite/actions/workflows/test_and_deploy.yml/badge.svg
+   :target: https://github.com/biotite-dev/biotite/actions/workflows/test_and_deploy.yml
+   :alt: Test status
+
+.. image:: https://www.biotite-python.org/_static/assets/general/biotite_logo_m.png
+   :alt: The Biotite Project
+
+Biotite project
+===============
+
+*Biotite* is your Swiss army knife for bioinformatics.
+Whether you want to identify homologous sequence regions in a protein family
+or you would like to find disulfide bonds in a protein structure: *Biotite*
+has the right tool for you.
+This package bundles popular tasks in computational molecular biology
+into a uniform *Python* library.
+It can handle a major part of the typical workflow
+for sequence and biomolecular structure data:
+
+   - Searching and fetching data from biological databases
+   - Reading and writing popular sequence/structure file formats
+   - Analyzing and editing sequence/structure data
+   - Visualizing sequence/structure data
+   - Interfacing external applications for further analysis
+
+*Biotite* internally stores most of the data as *NumPy* `ndarray` objects,
+enabling
+
+   - fast C-accelerated analysis,
+   - intuitive usability through *NumPy*-like indexing syntax,
+   - extensibility through direct access of the internal *NumPy* arrays.
+
+As a result the user can skip writing code for basic functionality (like
+file parsers) and can focus on what their code makes unique - from
+small analysis scripts to entire bioinformatics software packages.
+
+If you use *Biotite* in a scientific publication, please cite:
+
+| Kunzmann, P. & Hamacher, K. BMC Bioinformatics (2018) 19:346.
+| `<https://doi.org/10.1186/s12859-018-2367-z>`_
+
+
+Installation
+------------
+
+*Biotite* requires the following packages:
+
+   - **numpy**
+   - **requests**
+   - **msgpack**
+   - **networkx**
+
+Some functions require some extra packages:
+
+   - **matplotlib** - Required for plotting purposes.
+
+*Biotite* can be installed via *Conda*...
+
+.. code-block:: console
+
+   $ conda install -c conda-forge biotite
+
+... or *pip*
+
+.. code-block:: console
+
+   $ pip install biotite
+
+
+Usage
+-----
+
+Here is a small example that downloads two protein sequences from the
+*NCBI Entrez* database and aligns them:
+
+.. code-block:: python
+
+   import biotite.sequence.align as align
+   import biotite.sequence.io.fasta as fasta
+   import biotite.database.entrez as entrez
+
+   # Download FASTA file for the sequences of avidin and streptavidin
+   file_name = entrez.fetch_single_file(
+       uids=["CAC34569", "ACL82594"], file_name="sequences.fasta",
+       db_name="protein", ret_type="fasta"
+   )
+
+   # Parse the downloaded FASTA file
+   # and create 'ProteinSequence' objects from it
+   fasta_file = fasta.FastaFile.read(file_name)
+   avidin_seq, streptavidin_seq = fasta.get_sequences(fasta_file).values()
+
+   # Align sequences using the BLOSUM62 matrix with affine gap penalty
+   matrix = align.SubstitutionMatrix.std_protein_matrix()
+   alignments = align.align_optimal(
+       avidin_seq, streptavidin_seq, matrix,
+       gap_penalty=(-10, -1), terminal_penalty=False
+   )
+   print(alignments[0])
+
+.. code-block::
+
+   MVHATSPLLLLLLLSLALVAPGLSAR------KCSLTGKWDNDLGSNMTIGAVNSKGEFTGTYTTAV-TA
+   -------------------DPSKESKAQAAVAEAGITGTWYNQLGSTFIVTA-NPDGSLTGTYESAVGNA
+
+   TSNEIKESPLHGTQNTINKRTQPTFGFTVNWKFS----ESTTVFTGQCFIDRNGKEV-LKTMWLLRSSVN
+   ESRYVLTGRYDSTPATDGSGT--ALGWTVAWKNNYRNAHSATTWSGQYV---GGAEARINTQWLLTSGTT
+
+   DIGDDWKATRVGINIFTRLRTQKE---------------------
+   -AANAWKSTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
+
+More documentation, including a tutorial, an example gallery and the API
+reference is available at `<https://www.biotite-python.org/>`_.
+
+
+Contribution
+------------
+
+Interested in improving *Biotite*?
+Have a look at the
+`contribution guidelines <https://www.biotite-python.org/latest/contribution/index.html>`_.
+Feel free to join our community chat on `Discord <https://discord.gg/cUjDguF>`_.

biotite-1.6.0.dist-info/RECORD

@@ -0,0 +1,354 @@
+biotite/__init__.py,sha256=gzqOy5P7Zf667uYuUwqjLLW0GiBdqc23NLcZaXMuHKw,563
+biotite/copyable.py,sha256=Qnja44k58dAc3WkIUM0svqrbvqO9pSV-Atr9MUJSoCI,1968
+biotite/file.py,sha256=ktpRUk0OH5_wKIJHtCX3zDjXeJ3eQ4ycDjpp7HttUYM,6977
+biotite/setup_ccd.py,sha256=9StRz4qPVdTJNrPUoA_liwvkKnTb8O0U8PDxt1tDVwc,6248
+biotite/version.py,sha256=MOuKmfBvtVup8ZUykeLgczvguZc79qetObS_uNlNt_o,738
+biotite/visualize.py,sha256=z4lBfJAt5YxGqtgxgcLHKMwVcE4u6fqExEyrOHcSiaY,14330
+biotite/application/__init__.py,sha256=Rei3EwlpCnC_cJNQoTJYY_Gw_qLdsqgnRxV5b1slHJU,3148
+biotite/application/application.py,sha256=J9ydVvN_5C3nYuLl12EPBhM67i0GQm6MPy0F1K-jdgc,8372
+biotite/application/localapp.py,sha256=nwna3VKXLpQTTBbu77FRi7vq_0jArpbOvVH_iuqI-Zw,10599
+biotite/application/msaapp.py,sha256=X4nb0sXHWSBn8n2dLPScMJMVRtHegW2JhmjVmUzv_-c,12337
+biotite/application/util.py,sha256=z05IiFQXGaVW3pdUeeHL6izCaxZNrGbs10k9P79gID8,2580
+biotite/application/webapp.py,sha256=g2NJ7Fn1-28HC-saOd62ohp-s77WSsqqcVc_2N96al0,2221
+biotite/application/autodock/__init__.py,sha256=QtcZDgjFXYaHYSoVtnx8Bs2YA9TvwCg0fSkMfrxKK3k,327
+biotite/application/autodock/app.py,sha256=30-FGdjutoj5pHCxiedZywrzeFRm0Fv45eVpFaO84YU,19192
+biotite/application/blast/__init__.py,sha256=90FNcYrxTkEGlzf8RSR1uQkSp4BF42S99XK6FXnmUY4,380
+biotite/application/blast/alignment.py,sha256=aPbMz_qyH8Izl_g24BQKgvh6McYXyx0tPsGcocwQ4E8,3209
+biotite/application/blast/webapp.py,sha256=x8nXUxPYZmBxpmPK_ItYJj-qQh_VGqSgRLDI4oCXICQ,14733
+biotite/application/clustalo/__init__.py,sha256=UtEQiS9nDZF9-Sup3kbi06mTjv6YRD9Qbu5A722bNlY,338
+biotite/application/clustalo/app.py,sha256=hBnmdh2nhA1ipxz4OzVZ52UMyA0hqxf_MAej3bygbWU,7637
+biotite/application/dssp/__init__.py,sha256=smuKF9_8g5xzY-MFjYXTYa3wbTfQD4g6L3TDCfMTr8w,335
+biotite/application/dssp/app.py,sha256=0HwYT2XDo8nPPtixlLUfL-rPAZkt4wjtMKEuogQQ57Q,7828
+biotite/application/mafft/__init__.py,sha256=urPUmmuKAsB9DQeEeaj8EDt3uL0UjgBSo76H2HnLsLs,327
+biotite/application/mafft/app.py,sha256=W_iWXuaO0CaCFpnTyawlmQ1P0wt9pnGnwr-AzAudLM0,3397
+biotite/application/muscle/__init__.py,sha256=26qqctlXpZqoFBD1K_y_Zv7QZfDdMHOodGAXW20r42Q,351
+biotite/application/muscle/app3.py,sha256=pJtzRTyByxVFpcjMJCEBP4UWfRslpk5pc6lPuOjrbNE,7880
+biotite/application/muscle/app5.py,sha256=aNuZzvymFXK3h3Iy0A0W90K_poPs_5qVOaYmVwS5mCY,4637
+biotite/application/sra/__init__.py,sha256=GwfAKbOfTTYaLVdTwdkJxCMCY-SUd7WsN7BDAU2Xq7A,571
+biotite/application/sra/app.py,sha256=usJZ5uZ0durKYIBF58KauxBkwBtvDAG-iX_I4IBCRgY,16021
+biotite/application/tantan/__init__.py,sha256=XivhGt3vpQ7EvRKdxT_jQNXIPnvVxAUXCnHYZkSuiHY,340
+biotite/application/tantan/app.py,sha256=nWE3rlDqf3-jfpIXUw1ddH4ooiD2lZ1GeqBvGXEXtsI,7637
+biotite/application/viennarna/__init__.py,sha256=HlvHvgsTdzTbq3e9luAmMP-4DbkiBqx5ru69swdz4ns,491
+biotite/application/viennarna/rnaalifold.py,sha256=16arcCP55XC8OXNLkSLPNrMrHuU7b5VLyz0xqO_MDhI,10993
+biotite/application/viennarna/rnafold.py,sha256=skqZzqE-otS6uL38isGpikLUbwf8srsOQirINB6qi-8,8164
+biotite/application/viennarna/rnaplot.py,sha256=rIEFAdX_GhJkyDAG3CztxLnJZo8gy5-7yq7fGKqEPus,6572
+biotite/application/viennarna/util.py,sha256=lfssotSqZl4cO1ibgtgXgEFVzL9s1xMM-99wmuaD-wc,2712
+biotite/database/__init__.py,sha256=N3PuLKuEbQ0J55CddwryBGiLfYSazC697F8KnxizrKY,748
+biotite/database/error.py,sha256=L_FvDa-F4XUaCIVo6ZtLXIMn6P-cv783lvxR_Rtluqw,426
+biotite/database/afdb/__init__.py,sha256=SMcUJ0mPNdc-bnnW3wlsw7sDyBwGfU-_2Z2Dt_nB6xo,345
+biotite/database/afdb/download.py,sha256=TObGwWpnUYDRKP6_yLviWn8FqlhJ9S3ZEs8fgNJUqxU,7070
+biotite/database/entrez/__init__.py,sha256=88kXhS1XqXb4exnfZIaKD98t3RH3gEZBiNR-aBhl-OE,403
+biotite/database/entrez/check.py,sha256=r5dyDIBkfmKifYf4QCB3vswPfsv3Z-pJNv7HtdUokXE,2180
+biotite/database/entrez/dbnames.py,sha256=uQ5t5PCb1qrAmAdh8xWzO0WPWY3DybkW-JS4BRjQiR0,2873
+biotite/database/entrez/download.py,sha256=W5a-BrvB1TCfC7ZmQS1YuZhkEk__wBHupLKC6so1C1Q,7459
+biotite/database/entrez/key.py,sha256=O0XR87q51PNDXXvalyl0mZv7JvGip4QZwGrBcJb114I,1152
+biotite/database/entrez/query.py,sha256=Y0d1h-illu783JvQyWmLU6xDLf-CYiHRFEQOPZ6l2PI,7617
+biotite/database/pubchem/__init__.py,sha256=YvB4_HXgHto_Jw6PdsSNea-sFoh0HtEUWD7ByyxH2Xg,690
+biotite/database/pubchem/download.py,sha256=X3JlmDnttckg82IW8GJKBCqS4VirZPQP_iUCdkfaK4Y,10161
+biotite/database/pubchem/error.py,sha256=zQKHntwQDkcdm2ImKQgta2V45KeUaFfmM8tTaVwSMXo,908
+biotite/database/pubchem/query.py,sha256=NJoFI-feTXivZfa6AoJGJDrYA6v_CEQSQjR5dDExvTM,26905
+biotite/database/pubchem/throttle.py,sha256=V4RzypMfh1IaBC8yZrH1l8W1k7v2KLpj1_fK94k-__w,3384
+biotite/database/rcsb/__init__.py,sha256=BKYOAhSIX1zb00wp_6bw30M7XGliu64B35Dm2Gf-A14,345
+biotite/database/rcsb/download.py,sha256=06Sq5I66aF17joTmlRccLTGoKsSeJc5r-ih9lXAKpOw,6979
+biotite/database/rcsb/query.py,sha256=tzfaJ-7CHd_ULgqM152VjRJODUxeygKXVuzStdAibuI,33861
+biotite/database/uniprot/__init__.py,sha256=0U1mt1nphhPZomlauOeMEVDfFx-6Npyi2eGsf6ztH6E,347
+biotite/database/uniprot/check.py,sha256=cVF0UfiUCT2nZ1jLWVfs1Ygghzx30ZXy1yj2vvASL1A,1418
+biotite/database/uniprot/download.py,sha256=frw5qZHxLp84REgkiDADBbI-uM-E9FDEsMUwZTUGHYk,4393
+biotite/database/uniprot/query.py,sha256=WbxwDmOhNBJo8vkz_0kbZxbGqc6ob87pYmT3uUdvZcQ,7802
+biotite/interface/__init__.py,sha256=Mb4FPYW46Y6iduU8XVwWXUtgpsyVrk5gvM5xS2k1F40,736
+biotite/interface/version.py,sha256=-w9vOmwj_OmK98zNNZgXSIt9J2vMAZvw55-O3LgEEiQ,3046
+biotite/interface/warning.py,sha256=3kwFPSEZMk8Q7yccD1Fsgu51gENA1ZbcsdNG_RBnrUM,596
+biotite/interface/openmm/__init__.py,sha256=lCD3SVZXBNKwDsriwFG1ala-mlxfz40GxsKSTlwmBUU,607
+biotite/interface/openmm/state.py,sha256=DuoheeVwF8FqLQmer2mRJ_gRjnbIOkOsJGMfd6ARFdk,2816
+biotite/interface/openmm/system.py,sha256=wIAlQQzJMfHJDSMIJ6CwScNgJ10DBFiBSLkR7BU4o3s,7245
+biotite/interface/pymol/__init__.py,sha256=fL56vVJ0Ro-3aftoE3lBVRmwPRl2iHWhsnSEB5JQmK0,6849
+biotite/interface/pymol/cgo.py,sha256=naAQ-5R2wpsbXy3UkjkFvGkzRx8xVr53qlGpltyRO8I,10205
+biotite/interface/pymol/convert.py,sha256=mukBkBjGO0kv5Ec_ALG9i3BPYUCap1Zf1LiIJvBLrZw,6229
+biotite/interface/pymol/display.py,sha256=R8vgVRoByPr_mkhm81fJdtzyZCMzRj8jyfviNPAfTLU,8725
+biotite/interface/pymol/object.py,sha256=-eegu5qwye8_WE_89baCsk7nfqeHpQo50VoXPa4dCjA,45508
+biotite/interface/pymol/shapes.py,sha256=w0_fBczmPtI3tQrmrwOp8owg6WUfhX3qXhKXibtfwBA,6244
+biotite/interface/pymol/startup.py,sha256=vHdpd3RusQXJr9PSPbJxWbo8CuJSN4YpecNCM0az1Ak,4788
+biotite/interface/rdkit/__init__.py,sha256=0hPcE6j-HKorkcFq3thhx6k2BEjeo0bbwuCGTEqB5YI,551
+biotite/interface/rdkit/mol.py,sha256=O7Xk7ubkqVUDNuynthM9nDzzrrqyusD3Kd6k4aIUxr0,20170
+biotite/sequence/__init__.py,sha256=fUoOYLTavBTicHu-JCQkvrCAyRfKRspfCItufOBDGGE,3507
+biotite/sequence/alphabet.py,sha256=rI3KC_U05_gdLdXypGDicmJWvU2ruISMlCxr-NGPi0E,17782
+biotite/sequence/annotation.py,sha256=XeVjiagSR5aVIRywAIl927Iwdgni4VKj7SyQJjP9Wkw,30541
+biotite/sequence/codec.pyx,sha256=JIKPODmlk7RGW1GIhoUSrbfS1XRJa6vbOb5ur-62jIc,5116
+biotite/sequence/codon.py,sha256=zXGEitMgOomhems28nQtydwR3NH-3lxmCOYAGDKgITQ,16822
+biotite/sequence/codon_tables.txt,sha256=knCf-Q8tZToxEr7s4nM9xuq_5BlhL_IYEyNh9rfwWEQ,10411
+biotite/sequence/profile.py,sha256=fR-0PSpOKA3yNWaMXr8MQ7JLaYXgBtr6wxuj6pilXVI,19809
+biotite/sequence/search.py,sha256=4F5wkBjEYEnxHY81lscpUNYHqYnV7BeY8MoCVytXGQ0,3207
+biotite/sequence/seqtypes.py,sha256=szRx8sKaLOTq1Lp8qtg7Ru4dd_3SALl2zBqw0DFzy5s,23966
+biotite/sequence/sequence.py,sha256=lWG4TjGLDjhBStQk-y3ECLjElch4korQ5BSAiGJ-X0Q,12064
+biotite/sequence/align/__init__.py,sha256=ncVKWSjBtX6mjeikahsOXheqnlh9bT4mAzwkcMPYMWU,4910
+biotite/sequence/align/alignment.py,sha256=736AumZDAq2gtbF9XYdsXtxGoX5Qn-pd4aWA2Sn2r-E,25135
+biotite/sequence/align/banded.pyx,sha256=cy1ZhBpQcZSyZGLhPYGa8HKce_u58mfnHHyk18ZTBkQ,25934
+biotite/sequence/align/buckets.py,sha256=3QLzBDorc0ZYJv2SNuRn-mWmT3I2XljfCD1AoNV3ldw,2535
+biotite/sequence/align/cigar.py,sha256=5Q7TU4jVsCsk1gbyVtwiX3ugvqN90WRGqhl0UCNteec,14760
+biotite/sequence/align/kmeralphabet.pyx,sha256=CW2EymGklsnL_REWTdGx_r2pe0fNwdDmfjmSqf-IfiY,19231
+biotite/sequence/align/kmersimilarity.pyx,sha256=tmAKKZY2JOvnPjU0PQqInvb_MRo7whUxgX0iVZNWIbg,8665
+biotite/sequence/align/kmertable.pyx,sha256=dr_11wXr1iEqR2FxbBAwWRvct6Xv6V8LGy28aC55WWQ,125108
+biotite/sequence/align/localgapped.pyx,sha256=4rYWmMe_6fxmnAK-7mN3cV6dTy3xirWG4T65a7iayWk,33998
+biotite/sequence/align/localungapped.pyx,sha256=2cRRgd4cbgClyzEV_PJJf5FUp8XqXjk4P0tAkbIuEKM,9938
+biotite/sequence/align/matrix.py,sha256=58K6KuXs2r9-tCoc3IwA_ZpP_VT4fITn0pi2nkdoNyU,22991
+biotite/sequence/align/multiple.pyx,sha256=6t0lmyqECDpoRg_O-NqFC6PSBEvfcYeUpc9BD7w6J2A,22544
+biotite/sequence/align/pairwise.pyx,sha256=2eqiJFopGk6XXtE6-UX04lTEG0T-VcHrm6dDUiA9HM0,23182
+biotite/sequence/align/permutation.pyx,sha256=18KYw_x-K84CU5mJlXr8TP25IlwBbyHycDFGd5xQze0,10339
+biotite/sequence/align/primes.txt,sha256=XcNX2_hYQI4H-8MPvZH1oiYeQ1lfxU8rBvuwMlcQa3Y,10961
+biotite/sequence/align/selector.pyx,sha256=U421Ii7vTRVHD_h7lvUP1bgjCthomoI4kY8taF6UTng,34427
+biotite/sequence/align/statistics.py,sha256=8Uv21eDMx17LC-2amUbgqbgS4lezcNdZiaiZ9y9EfFg,9916
+biotite/sequence/align/tracetable.pxd,sha256=JhxS9sl5wV6HD_cJMXaBt1zm_4_y5twsBs5buMVDYI0,2888
+biotite/sequence/align/tracetable.pyx,sha256=ReX5kId42RQqlMZmNRpzMmF3_9Z4laL8dXK88IiW-6c,15824
+biotite/sequence/align/matrix_data/3Di.mat,sha256=-vJKsfx0GvUTWQLn6E4iQqAb17886onYD5277vE0DSc,2044
+biotite/sequence/align/matrix_data/BLOSUM100.mat,sha256=W-q25YSvx6Eh_OMpjlHAxHS1CN2n8pfKvxVzTYeE-ck,2205
+biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=s5AR5BjhXVly2A900JiriOodp2I5tv95wqw87TUAyOk,2153
+biotite/sequence/align/matrix_data/BLOSUM35.mat,sha256=0PksmPiSphINnKFWBh1jQieLg0F5bIISIwZVwS7trFc,2153
+biotite/sequence/align/matrix_data/BLOSUM40.mat,sha256=mqc0rBUGlBSW8valFG4GSp9sWhJGRw0j9-3gCiCX6Jo,2153
+biotite/sequence/align/matrix_data/BLOSUM45.mat,sha256=cld3hS0GR6A32UQYixIkOYo_Ntyel4bEpXVjARpNm7o,2153
+biotite/sequence/align/matrix_data/BLOSUM50.mat,sha256=jrNEGAggP_gpUggGMkyemzyUogSXX48ykoqM5kBMHjU,2153
+biotite/sequence/align/matrix_data/BLOSUM50_13p.mat,sha256=8q22VeYCDIPnRM474MRDdmrSowgUhclt7IG0kW_4WyA,1875
+biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat,sha256=6VAYKFu1hyvH4TlUvKzpitWNhLxFKie0PwUSN3vrNVA,1875
+biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat,sha256=uQnHlhJPr34ETMroukHG32is8Y8Ij7FHyovgpM9ewBo,1875
+biotite/sequence/align/matrix_data/BLOSUM55.mat,sha256=esaCloPHgElMqbDeM6cG1V4eAAy0DuAoIto7W2RZmIE,2153
+biotite/sequence/align/matrix_data/BLOSUM60.mat,sha256=PQ_0xnQZ9wvEJDu3AAVeqtOWY4FPzHL-IoO7zgdGflE,2153
+biotite/sequence/align/matrix_data/BLOSUM62.mat,sha256=_rmVwPd02hfykIVtqK9HVrkXi10ns9AlNexxZUWZvDI,2153
+biotite/sequence/align/matrix_data/BLOSUM62_13p.mat,sha256=mID-XPFLoDyu4E_UKgN4vRjBGR745fBAsTegyoyhT2M,1875
+biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat,sha256=R7QFP9TwclNXUG-VoOBNWxR616k1IRwSQdeMLbCqoOI,1875
+biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat,sha256=lukNF3Usljvt1F7tp8nTErTS-KmgOM5nacUNIP7svNo,1875
+biotite/sequence/align/matrix_data/BLOSUM65.mat,sha256=OVfRPcz1Tt-Xd8rgi5C7BBcZkz_rkznxDLghEWZCKIM,2153
+biotite/sequence/align/matrix_data/BLOSUM70.mat,sha256=o0C1o5I0WD0rylKba_-WEDWTdhGzKU1ke8qJQHEdR1Q,2153
+biotite/sequence/align/matrix_data/BLOSUM75.mat,sha256=eKtqmYGwYNAIx5VjHlciapubqef3Fj-_FbFfaYqP3TU,2153
+biotite/sequence/align/matrix_data/BLOSUM80.mat,sha256=iDNgcsVFZrGF0Ksx6TbbtZDgXS8VrwKsr-Wa91NLq9w,2155
+biotite/sequence/align/matrix_data/BLOSUM85.mat,sha256=oaJKauPQ6m2Z8-lXL6QKW4rm-kQ8SbKZ2VHfxoDZpJ0,2153
+biotite/sequence/align/matrix_data/BLOSUM90.mat,sha256=E-byBZiX9-KoHU-Rns5-fQTeKcE4H7OX4HcP9LC-DRE,2153
+biotite/sequence/align/matrix_data/BLOSUMN.mat,sha256=2e2wYW20_PmJzFoFgd0NeNZ-dpTASqobXupnwB-ZPa8,2152
+biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat,sha256=cMtXxZlPBLb5xK0gaeeh6tPxEjINyy5CFzjsyKdh6lc,1875
+biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat,sha256=AhADYOEOJa_2Z3Vk_A7nf179IEvEVNnFRN3Izw0w1Aw,1875
+biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat,sha256=e0mN-lYiDEhVRCJ4M6SM0vDe0v_GzRZxvFEgBRhl3qM,1875
+biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat,sha256=cHb4Xgfs1ClvlLprxkMhAaYoqJw6-doKB-gvuYdoKsg,1875
+biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat,sha256=CNxG720EeLp4Q92TZjiLlk3hxW7PJFtnvFN6beSfhsw,1875
+biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat,sha256=SqvZBwB7M7QKn2urlHrV2roG9GYK6j6tgR-hTKWUiz0,1875
+biotite/sequence/align/matrix_data/DAYHOFF.mat,sha256=uvYbLTdwac9DgOswGoCHQwesPDH-IaJtXTkSVDgTF4M,2113
+biotite/sequence/align/matrix_data/GONNET.mat,sha256=TVzc43DX6QWdU5fcRCcd-2x5TDqLHorS4B_TXLs7kyg,1705
+biotite/sequence/align/matrix_data/IDENTITY.mat,sha256=JyqbeAE05T3JrM4azvLuvyeL3ZtYLOTmtBApzy3-A0o,4082
+biotite/sequence/align/matrix_data/MATCH.mat,sha256=GErmlX4HbkLO6-JasT3CJFIMLT4tBjF0T3OEGHPcdhw,1875
+biotite/sequence/align/matrix_data/NUC.mat,sha256=B5LFCFoqbX5dHBrM_A0zFKraQixVioBUYUx_gLiV2uk,1196
+biotite/sequence/align/matrix_data/PAM10.mat,sha256=Q5SCwzP1JP8WV6LK3yplYic-9Hlb16RjB0xxnePYCRU,2700
+biotite/sequence/align/matrix_data/PAM100.mat,sha256=rMMayRLjhCbCfkXqR3SrKsaEqo_A3uqVdeQNhXscqKE,2100
+biotite/sequence/align/matrix_data/PAM110.mat,sha256=ZOgBVcFHbf7LYxOOhD4lOZ1CRmjpI57ncVt6PQ4_4EQ,2100
+biotite/sequence/align/matrix_data/PAM120.mat,sha256=BL__IVzN0taPMX6OrbUBqCM_cx0wQsEVXY4Q3wzKeUc,2101
+biotite/sequence/align/matrix_data/PAM130.mat,sha256=S5kfwlOUYWzdpgBcCxP-VYigZlxPbsSpgMZsLg-YX0s,2101
+biotite/sequence/align/matrix_data/PAM140.mat,sha256=lrUkyXHLLI-diGiwz7mXODMSGvZMnbchPnoHqi80Wzo,2101
+biotite/sequence/align/matrix_data/PAM150.mat,sha256=sb_UBf1D75MBocAxvsS_brC-71DJG4LX6eR5lgcImKE,2101
+biotite/sequence/align/matrix_data/PAM160.mat,sha256=FsF5lVpwSWYYT-VxYgTdw4sR9g_GaWLtVc90cYhzLgg,2101
+biotite/sequence/align/matrix_data/PAM170.mat,sha256=u_FrksvWr_93JoPHcq98kbiL_criHpkmMlP0JEzkRqw,2702
+biotite/sequence/align/matrix_data/PAM180.mat,sha256=cB7ObBcyQRdkL6TwNSLZC56JWdckmgE_aDXgdKwxjC4,2702
+biotite/sequence/align/matrix_data/PAM190.mat,sha256=OjGFjUBnY8bS3hCRkrsJX609JzIayS12PJaAF01GnsI,2101
+biotite/sequence/align/matrix_data/PAM20.mat,sha256=zwMcwCrUtGBovoFD5ZwU-u_69uaNCm3kEC87yaLkQFE,2700
+biotite/sequence/align/matrix_data/PAM200.mat,sha256=3SQbSCLtN2EjOqNtW1h2g91Lm_B60Gv9k0AUbvH9xUI,2101
+biotite/sequence/align/matrix_data/PAM210.mat,sha256=dLHMDY3p04HX0ggxEBsIXH6VCaKMzYFb50FnQnIATvQ,2101
+biotite/sequence/align/matrix_data/PAM220.mat,sha256=4WyRwlIHzpAm_kSbZPTuGDllYqf5Fx7MmawJ4fa-AiA,2101
+biotite/sequence/align/matrix_data/PAM230.mat,sha256=01wKWPEzBWgnZBmhlTpDk0R8Et0dWeA7oxpLs1KXnAA,2102
+biotite/sequence/align/matrix_data/PAM240.mat,sha256=9jC0cjrdkYc-f13XWJkFif4cRsKMXaAukUdabaImBak,2102
+biotite/sequence/align/matrix_data/PAM250.mat,sha256=y9MQhrrBchLJ99xKGsQFxAyQV5U3umC_JaT6hTt5cIM,2102
+biotite/sequence/align/matrix_data/PAM260.mat,sha256=QL2Jc2wNcxJaknyJeB_Ug-E6lsxnCgxsKIFytRrZMzc,2102
+biotite/sequence/align/matrix_data/PAM270.mat,sha256=SDuy9ZgiyOxuwLXI5rMNrdEqxIEOJrqshrtKrHFcIMI,2703
+biotite/sequence/align/matrix_data/PAM280.mat,sha256=RSEQWeyNtEqU5gWgUGPXprMj-Q9tyMVgPHpOMkuVxVY,2102
+biotite/sequence/align/matrix_data/PAM290.mat,sha256=CMM9FqtFqXCGZggUJ5N2qp9NWJozwVDvhvqeOMCKHfQ,2102
+biotite/sequence/align/matrix_data/PAM30.mat,sha256=RVyaISQizjROVMC_40_uLKuxmkFJFbO0LSWwaZuNmkg,2700
+biotite/sequence/align/matrix_data/PAM300.mat,sha256=neWuBVsuGUQgQ8pfCtF0HgTG9uCSyKZAHJq7-SfhdlE,2102
+biotite/sequence/align/matrix_data/PAM310.mat,sha256=Xn05ov6o7431yPJJ-XW9z0fVs-TBuKWlq2nQWEwXgS0,2102
+biotite/sequence/align/matrix_data/PAM320.mat,sha256=2T270mwuV95gGOJ5IJlKIeXYwDAaEUIBQ4-9yzENxn8,2102
+biotite/sequence/align/matrix_data/PAM330.mat,sha256=6Sj0fVGaFSREgiv6SzIRs0NF4-2GiSfltVj33_cW5uU,2102
+biotite/sequence/align/matrix_data/PAM340.mat,sha256=oqHYGm5OCMaCkEsc0wb0KRCKhVaOEe-Ql0KOhbFdOgY,2102
+biotite/sequence/align/matrix_data/PAM350.mat,sha256=KPkW_qQgiCb2VwUz3FuqBb2f5NcA16tDiMMHTOsT02g,2703
+biotite/sequence/align/matrix_data/PAM360.mat,sha256=J0N57KI05sGuaDKc8ImknGa4OPs-NVC1BRt6cQNNE0g,2102
+biotite/sequence/align/matrix_data/PAM370.mat,sha256=C591IaeROpL3CuS7QgijAXTLJ_jMpenXR0KQY-irvr8,2102
+biotite/sequence/align/matrix_data/PAM380.mat,sha256=QV3SnTK4yzqcGKKzGEBLOCdVVQ0EcyMgDjRQ5oE7wG0,2102
+biotite/sequence/align/matrix_data/PAM390.mat,sha256=jserXJqS6aZ-93c4L3vB07EcBrOHUcNc5SOC1qfbjxc,2102
+biotite/sequence/align/matrix_data/PAM40.mat,sha256=NSYI8cKFFIMktbejssnHNmcG4ohKplzp9_-SpB4fVoU,2700
+biotite/sequence/align/matrix_data/PAM400.mat,sha256=L7WknkJVDNs2RryikJN4Dz3DoGpgHeELcAht9fmsQxs,2102
+biotite/sequence/align/matrix_data/PAM410.mat,sha256=kwCJCXg2UoSqewmmuggFlEQfQ4-_CenFCuuqzSZZssk,2703
+biotite/sequence/align/matrix_data/PAM420.mat,sha256=HoANpnh-_iz-gbBrC5P79V1R8xuqvK0FVPwfOA-d98w,2703
+biotite/sequence/align/matrix_data/PAM430.mat,sha256=AvubENvc01eSMC3uJAigBnNVmnAn6nWBHqesmJrjsvg,2102
+biotite/sequence/align/matrix_data/PAM440.mat,sha256=32Gm35V0mb2C0U02AyojfUQ1vJw_Mw2JhOwgVoJMZLw,2102
+biotite/sequence/align/matrix_data/PAM450.mat,sha256=FGLj7yWNvEsP2qLGKw9xIjYnodHrzw0VLa6IVVk0k74,2102
+biotite/sequence/align/matrix_data/PAM460.mat,sha256=ZPifNWXnIRDrHJrE78rCPhUvdwdbf0VjDLjNKgTnfQY,2103
+biotite/sequence/align/matrix_data/PAM470.mat,sha256=FkQrvmy0i7BQ6RtwWSuCtieYFL8QuWn2bOYFKw40su0,2705
+biotite/sequence/align/matrix_data/PAM480.mat,sha256=S-lQRy2v8kZzvHaEQk8XyWK2ZA3B4DD9m4pE-kChO2A,2705
+biotite/sequence/align/matrix_data/PAM490.mat,sha256=NK3ktYiytB3N1xZOAPFrluohm7RAxmBGAVaEvSG-MAA,2104
+biotite/sequence/align/matrix_data/PAM50.mat,sha256=eZmmjxqsG46xR-lfxbS-M-WPyiMxQwM_P1hCgZZgw84,2700
+biotite/sequence/align/matrix_data/PAM500.mat,sha256=eMHkixX5TRiq7V4nLdYvXfTN-acJ_A_rUVAnawrNThM,2104
+biotite/sequence/align/matrix_data/PAM60.mat,sha256=tEP5rtSKfgJt14UAQd1dhHO4BDBzlUibpq1NQpR4BsE,2700
+biotite/sequence/align/matrix_data/PAM70.mat,sha256=hYpO31Doaim0281R8CSaLuN3ufFslxH4sho8ErMpqx4,2700
+biotite/sequence/align/matrix_data/PAM80.mat,sha256=Q6B4P1vT9zLD4zXWpuBUrRfPgmjTLTOcF_yMnKeDgWI,2700
+biotite/sequence/align/matrix_data/PAM90.mat,sha256=kB9YeLnQcIJwSRrIm3Ds961BH44ZTPVFjPZ2ZoJjhXQ,2700
+biotite/sequence/align/matrix_data/PB.license,sha256=rRrKDQMPavU4XuIApytyQgVJLESA4rij074TO2sNijs,1111
+biotite/sequence/align/matrix_data/PB.mat,sha256=uzRYqr9cWWM9aJYyT7n2ZDWRcWLCXTJSj4UvDviB0zI,1711
+biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat,sha256=x9VzlyYY5EZ8xei0rnQ2ytuG6EGS-hUTxk7h1MSAyII,1875
+biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat,sha256=t2RTYBWH7pD2mr8OGH7KGu8DIs14TI3SDh_OF75YQyM,1875
+biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat,sha256=ppkCtdb5MiZFF4JNokg3X1gf1mDN4qGV0C_dCHcbsbs,1875
+biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat,sha256=E52mnslKgzhNeB6n3LNTr_ITc2Wnv_59PySCPd6-au4,1875
+biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat,sha256=xABdTJkFD8zQKcmyvnt6jL3saEP0o9CF7EcP3KM9aU8,1875
+biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat,sha256=FzdtLvS9xnAvNH_xCZ9P1ydCHCMaFeYC6VkqA844x5Y,1875
+biotite/sequence/graphics/__init__.py,sha256=0ET4YOAhoIFfPT0riAX9aXBqez0_esRp-uaX5lqG3DU,1186
+biotite/sequence/graphics/alignment.py,sha256=6Kj5CZQ7gXRcf3d7S42OU4u3JBU-ETYrBRbsuuuJytY,40470
+biotite/sequence/graphics/colorschemes.py,sha256=yugj2tdYHbfin_kQOP4iLQQb7MZraTGNWdO6F6H6CA8,5688
+biotite/sequence/graphics/dendrogram.py,sha256=Z9yMWylOZ52LMz315QWVFbXyl5GukhWoYKtDKp6-QVc,7902
+biotite/sequence/graphics/features.py,sha256=5-6cRftSyVMed8bZ22Yh0nskXKrfa3psMuLXtvXT2aE,17841
+biotite/sequence/graphics/logo.py,sha256=z_D7gzaVfROB-wTpDql4VJHb-iG5L2boOy6ScJ56piU,3794
+biotite/sequence/graphics/plasmid.py,sha256=9SZItKWdLSCdTbolBsWDPyVDb-75aYGtTsPKH_9ywio,26714
+biotite/sequence/graphics/color_schemes/3di_flower.json,sha256=O5CIZo3B4kA6ItoEAFCcCwvkFlz5-9GH4fRH-Hh6Ugc,964
+biotite/sequence/graphics/color_schemes/autumn.json,sha256=ykykAiaOGDBaBLXwtjqVBRYmce-8uK4NgtwHgnkLfio,893
+biotite/sequence/graphics/color_schemes/blossom.json,sha256=puHv-OkH37s_6kPSM_Uq6wnbnHdGu08Mdq-QxNu2fv0,894
+biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=54lrQvggpxSKGTy4n-yOvFrTwGxucJeo2ruzrghXfSk,259
+biotite/sequence/graphics/color_schemes/clustalx_protein.json,sha256=k4Ree6wofz9WnOUOvqHmP0nBv-sqC6TYG1gX8U75NY0,731
+biotite/sequence/graphics/color_schemes/flower.json,sha256=GCtQFSSwsCWRLFDCfkW3t3hX1Z8yT2Tgz2SuTa8U5vY,893
+biotite/sequence/graphics/color_schemes/jalview_buried.json,sha256=wGL4cJkizB3miiMOcnde36kl81NAWdg3PFtIHVa1nvE,807
+biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json,sha256=k_iWsZjBpjXbnwFbnt__WQWnFmktZraYwvmBxz7V9fc,815
+biotite/sequence/graphics/color_schemes/jalview_prop_helix.json,sha256=rRf4rpqdIiMMZj9fVOdRdaEkzcS74cI1snTFpZv8Gvg,810
+biotite/sequence/graphics/color_schemes/jalview_prop_strand.json,sha256=yVz0kIvv1q0hXj1v9taxG2Ff-dk60csTQLSzFhBKK3E,811
+biotite/sequence/graphics/color_schemes/jalview_prop_turn.json,sha256=Iw3f9dAmt9vEDj0TqP1ogXjCn8QN50pdEEC-KzidN5w,809
+biotite/sequence/graphics/color_schemes/jalview_taylor.json,sha256=EIjhkViMxbIE67_YUGTi-JYv55bLLGVr9Y5ah_J4cug,729
+biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=jzg12_f-7cmxtVKwgqNZCj1NxSKjKCUG2tZdc7ihvqA,728
+biotite/sequence/graphics/color_schemes/ocean.json,sha256=hfQeJFs90GA4q85Is6kE6NROqctuQY_N8TvfbD1FvAU,892
+biotite/sequence/graphics/color_schemes/pb_flower.json,sha256=0OhKObhab7Oyj8ChVEGdOPz9FshhhPuakwUV5f5mS_4,716
+biotite/sequence/graphics/color_schemes/rainbow_dna.json,sha256=Lw_My4qOSFPRCpiEJWZQU4kUvy30mXx_-YS_gcIWqiU,258
+biotite/sequence/graphics/color_schemes/rainbow_protein.json,sha256=Ulm9UqjT_klqIz93g54qz5VxlKDJNSLi4ywpyElfCzU,782
+biotite/sequence/graphics/color_schemes/spring.json,sha256=Yw49LbAU_TFE_L_mt4wocoiVUHpZEMjrAZi2pWUuR5s,893
+biotite/sequence/graphics/color_schemes/sunset.json,sha256=LQTsAQIuH1vIn2479AlLZwrBqySEE9aQSBpUKN74XAs,893
+biotite/sequence/graphics/color_schemes/wither.json,sha256=SawwzITBHvhS4XYf6CkNDOnK-i-yj-Yx4aQEGnUycjQ,893
+biotite/sequence/io/__init__.py,sha256=MbsrDuoq0Cxd77d9m0ueUvI0lsftNt5EibJIYUo6a0M,326
+biotite/sequence/io/general.py,sha256=7JQBPcp0gVblaGUwYW05dYreyOG9J5LFUz-v6XGGX-k,6895
+biotite/sequence/io/fasta/__init__.py,sha256=6aXOhuGVn4FJoJMop3HedLQ6IRrZiuEOWCrC-sGtu28,742
+biotite/sequence/io/fasta/convert.py,sha256=PxjnxjG-UdXv75YD2e-7-mjBzUGshOtQ1Amm-fII3vI,17094
+biotite/sequence/io/fasta/file.py,sha256=fmVDi40n7lDmdwNFQl4FPccL3NDNMD8e9gG8g6ZNP1w,9317
+biotite/sequence/io/fastq/__init__.py,sha256=p3dmgI_ytFxai_tdrqpRhkTUzBkQMM5J2cNQ1p9-JXI,607
+biotite/sequence/io/fastq/convert.py,sha256=BKZ3_wHFeynAfDLNKDctI2Amfl5-F0wNyV6qv_uctMs,3749
+biotite/sequence/io/fastq/file.py,sha256=Ub_a3jhtjnHztN35_eAK7KQpM2xaG4vtZKam5JAx5gI,18324
+biotite/sequence/io/genbank/__init__.py,sha256=DVTqOI2ilzlo2O-IyfUv-7WxsxVIBPPtoEjZ1MNV3Pk,490
+biotite/sequence/io/genbank/annotation.py,sha256=J8_DODOqNcPvj_le5md3-9nttlNV3ViXCNtGAdNtSBk,9700
+biotite/sequence/io/genbank/file.py,sha256=lT3S853nNLUUlxQdkvvNADJa-wJ_5QIgHYZmSF6f0BM,20927
+biotite/sequence/io/genbank/metadata.py,sha256=bF3fttJMmFa6eELvQ9UqzFVSgGkVUqLfVsgiLz01LBA,9687
+biotite/sequence/io/genbank/sequence.py,sha256=_y-IcIad0EYUYovy9hcCt8DzKfoboxBPJXE5Nhw72yA,5677
+biotite/sequence/io/gff/__init__.py,sha256=-m--LdBhi8sDWD0mbjxoxU_hRPSeJ7APYCYFKkpb448,949
+biotite/sequence/io/gff/convert.py,sha256=obgIoTAh5a0SCaS4HRfjGUY7X0dXd6LG-P7hRIBeZ5Q,4739
+biotite/sequence/io/gff/file.py,sha256=ilxgm-3_QndGCQThjSTuyk4mNsUhPZlD_SPvWnqrDmE,16525
+biotite/sequence/phylo/__init__.py,sha256=aNP1B9DNNTXMyiqWkzF6JZFynlcmIg-bDeN-eDKakgQ,1297
+biotite/sequence/phylo/nj.pyx,sha256=YOseJP7fKCnqhh8w3mK1z3fw6cKF5sU5oRkb1D3X9vI,7501
+biotite/sequence/phylo/tree.pyx,sha256=kmT2kO9cH3svQOxsyuPLfbUsWnTNdfVrx5xaxcmTC3I,40374
+biotite/sequence/phylo/upgma.pyx,sha256=llgc-9fEOU-D1a-ESMSIAoPjHvsd_L0-GnwkL-uzWNc,5376
+biotite/structure/__init__.py,sha256=SAQTuJXUoZnyuuYqXW4wMHR3SByM4jckGTXrefwxmDk,5623
+biotite/structure/atoms.py,sha256=flcbsPdQzo0v1HAn9FkcwgLnmVRCKq_Sx2gh4hfl7oc,53720
+biotite/structure/basepairs.py,sha256=zukmx20yLNmXx2_NGGyEcGVPvzJm_ZHOunIjLqbj3js,51312
+biotite/structure/bonds.pyx,sha256=4SNNkVENVRKd8QD8O_wMAOAONFMAnqk4w1jkKHcUQQc,73828
+biotite/structure/box.py,sha256=8JjPHYdc0_SQsMSb6i05GmghW8O0KQZ20ZrSgtKYuXo,24120
+biotite/structure/celllist.pyx,sha256=1eOjsMcMshDWz7JHSZeUkUJO0USTqmCzzsHqYv3QsMA,35427
+biotite/structure/chains.py,sha256=uEGd7AHk-UHjQm1o_vYSeSWs5tbu7YpOv2LFi1BSpn0,9657
+biotite/structure/charges.pyx,sha256=7dgUxeOjylHmRiUhzpKVGFLnvL7tkhR6TsYFB-tUPZE,19359
+biotite/structure/compare.py,sha256=Sy9xVcDY0sELBHcVfvXV9fn6OawgUjGGyKOTnWwavqM,28120
+biotite/structure/density.py,sha256=DKZ2znerD5lAqeczKxaTbTH86YeqFkf8DUD3aWoE2VU,4306
+biotite/structure/dotbracket.py,sha256=1aOy386N6H666YK_vVaE1Ed28Xx9-OlW9jWLI51v0U4,7411
+biotite/structure/error.py,sha256=NaQBi7CGUYpa7-Y9t0We8iVEJwqpsNWLXkr1PTBKlxQ,822
+biotite/structure/filter.py,sha256=Gshm8z6WGf6bGIRS-mqg8DP4m248GWvZBnp7_17UHXI,20760
+biotite/structure/geometry.py,sha256=GcV0hY1x3WjJmOCLa31_1o8HrS3m86J20507ZPHe35U,30098
+biotite/structure/hbond.py,sha256=FEOrWUQp0fhGYMiiRPCSCXY7HH1rJY1IKNWsJNH5eN0,15664
+biotite/structure/integrity.py,sha256=lzXxvuDeLZUyd2DhPjNTHMu_Ub_RG0SVLiEY7hHTXWo,6977
+biotite/structure/mechanics.py,sha256=hg1wre3uPAuXfyZ976mryvd0_Db1UE-iTLE9qjfwijw,2659
+biotite/structure/molecules.py,sha256=VdfD4w5cbbT4_qQdNHYgIjqwQSvaS-SbfNE5ytNCBqI,15628
+biotite/structure/pseudoknots.py,sha256=fOCtH5iIJfceqcILTXnVTaAgP3GQyGTne_wvjTuqf8c,22715
+biotite/structure/rdf.py,sha256=XAkbnbfk0wx_cIlrDYXBMUzzShgICUCpyPPfTNviWBQ,8349
+biotite/structure/repair.py,sha256=MqWQTIOH67giGQ-_yRFARa0uqNFRHHOb-PwSBkdzUL4,7298
+biotite/structure/residues.py,sha256=ly9chJtAtdfebJ2mVOAWMCXOjUG6-ktXlChl8l0dRxE,29119
+biotite/structure/rings.py,sha256=TtOoERBpIgUQHysTOA9Nnm8Gttbd1dR-pIGYAa9Gi5Q,16140
+biotite/structure/sasa.pyx,sha256=5voouKtm3PwTjW6C9rwsf_L63K_xiZCtYGLMX44Tjk0,13250
+biotite/structure/segments.py,sha256=LfdrVVkXGi47q4dMkY9snp6IISuO4BYoT-ZHWQhheHc,11113
+biotite/structure/sequence.py,sha256=RFayTEC85_ETGq0mQVX0gy3tZU6-dTQStyReVzauTqU,4355
+biotite/structure/spacegroups.json,sha256=C3O--eJKKKOScmCyqPAElFh-qTlMN5f4EkzxWfhaigs,53125
+biotite/structure/spacegroups.license,sha256=-9GpM4nLKzKQgPXGf1PNUXhCM8CQUm79QWFA40KG_aY,1323
+biotite/structure/sse.py,sha256=Th5LBvwV6x94d1vbBdxFnKGBqaPxDkTit9qNgeFBC78,11710
+biotite/structure/superimpose.py,sha256=cE2Q3E0YXzYh6KDhYcBbBi2O1c1O2ZIPUbBlGNEvh2Q,20073
+biotite/structure/tm.py,sha256=dzLLD3GYPFsVgXgND8-fZT2Y3pp0FDA6S_Z8QJUr9S0,21548
+biotite/structure/transform.py,sha256=WZ6fysoP2OR-tpJxSjNmCkUVqdBwCCnCYRyWa4hPP1k,27711
+biotite/structure/util.py,sha256=2gqaq018zuHJ5uhRcycrzx6biVfX4S1MkqWkbJC8a3s,4560
+biotite/structure/alphabet/__init__.py,sha256=UxJZ1_WsI1SPs89ZGv4Xmr-n0pWwlQcBBglfJEXzanY,953
+biotite/structure/alphabet/encoder.py,sha256=OMQXiMo6xnhIsWoCZ2xKvGpV28k24lM8LhL9cZDDFNE,11715
+biotite/structure/alphabet/encoder_weights_3di.kerasify,sha256=m4JF4oVWBbiu6r8DM9ONQ5Bmcbqwr5dxKfqYThOmHpk,1032
+biotite/structure/alphabet/i3d.py,sha256=eq74BA_GWU3A0jC0hjPSsI1AELuOPKpoWXtmDbaoEH4,3118
+biotite/structure/alphabet/layers.py,sha256=aOevc3a-kL65MfcFsauXt7YBAfMd5V8y5Ch534EvgEc,2173
+biotite/structure/alphabet/pb.license,sha256=rRrKDQMPavU4XuIApytyQgVJLESA4rij074TO2sNijs,1111
+biotite/structure/alphabet/pb.py,sha256=n9EyAgWLZ055CMFhQwc_t1xvG4KJ6lTMGwh_3H1UNvk,6164
+biotite/structure/alphabet/unkerasify.py,sha256=YjuM8molBvuhfhGAAF5L-zo8agC2S3WLTDWMdARn_7Y,3429
+biotite/structure/graphics/__init__.py,sha256=crwq14wVv4ttDEecmExvEyh5Z1LCafb3wznZWB7HOhA,366
+biotite/structure/graphics/atoms.py,sha256=acZXrWVRblk83FfLePe3pHoMcjJJH2eEDyZFmqmw-xs,8359
+biotite/structure/graphics/rna.py,sha256=g3Rxzz2nCFXKv6IXCuKd9nnN57SI5WZtAcjzxRAhHtw,12140
+biotite/structure/info/__init__.py,sha256=D1ure7j8lAfbLGqQricxHLuiDHf0FLzV_p4m5rd0dPQ,722
+biotite/structure/info/atom_masses.json,sha256=DJ2YMCN4Fvn0zzT91N6TotoLMPm_EkeOF23Yjb5mvGg,2504
+biotite/structure/info/atoms.py,sha256=cjswMLpmM6Vv9A944oR9WLZkQV9uFEZY4x1c-2MmxR4,3369
+biotite/structure/info/bonds.py,sha256=7qp4EYo61x6j7OK9Eyolh7Pmg4PU8Rodr5_KfmnyzP8,4793
+biotite/structure/info/ccd.py,sha256=o0Jb7YYJbYpyljfNGiqXF6bXP7IUlCY3cRMQj1EyWvg,6051
+biotite/structure/info/components.bcif,sha256=3_2zoZYA1RhUBY2uz7yb0blKq0E6BOev7Y1LdnBiHUc,63283092
+biotite/structure/info/groups.py,sha256=0NTOaFgvqf-yWTMNiZguVx6i0sVWXB-AhnPyhuRcK5o,3312
+biotite/structure/info/masses.py,sha256=s8heq0bG33-6NTeRqA2WpoOqUy-mwQTfM5a7CWA0YE0,4676
+biotite/structure/info/misc.py,sha256=_-TSbBsZ70fv3Kcwa-28LTOOZpLJZkHE23XjvysLdF4,3565
+biotite/structure/info/radii.py,sha256=-qQ1n3IS58crudCKKdb41iCpVyKIJS6NeKdYRY0ZerI,7555
+biotite/structure/info/standardize.py,sha256=fI-iDut7qu8NC2Vcl-ldsfFxJMpuCZ9Uo30R8PL25mU,7924
+biotite/structure/io/__init__.py,sha256=d9zsCIGeTRQ_R8n5xBwi5jrfanRMEeCIh9E9xjmnqVQ,1027
+biotite/structure/io/general.py,sha256=CtI0dDoHCDBXoh7FDS5isKM6AMicVBjNAlmcgu0bdN0,8695
+biotite/structure/io/trajfile.py,sha256=kyWUz_45rX2sBqk6Ya3EolqMmu_qqsIqK2uwhwCusfQ,26093
+biotite/structure/io/util.py,sha256=4VpPAjT0Lup3Q8DHN-Da3E9z5kJXxqmfGbfGO8AFytw,1054
+biotite/structure/io/dcd/__init__.py,sha256=oy8P1khM60o8M5grpSoGNZkudTBrTUPF33xuLub5sNQ,401
+biotite/structure/io/dcd/file.py,sha256=zLvngfNmF8pBM6J6kw-i_-rtFiJj1Bh4HSCAmN0EegI,2291
+biotite/structure/io/gro/__init__.py,sha256=jPh0RWv2vbpmgB0U0lZ6yo7SkVZycYfx2UQqKWCkOHg,422
+biotite/structure/io/gro/file.py,sha256=sF1sEWg7l9AXOA9HrW0sZo6tg_I1bT-K_RSBFiU67Mw,13083
+biotite/structure/io/mol/__init__.py,sha256=s1_xplK-Grhil2LLZiNiLU39wLvYr0LB1Vrn66BOmrU,602
+biotite/structure/io/mol/convert.py,sha256=grUcNFPaWd_kyJYrb2ozzbIzvNMMxyzk4ze2MLsL4zg,3901
+biotite/structure/io/mol/ctab.py,sha256=A_qycDLi_pMLR1qjLfBNr-rAlUJT-Klv53ap7JSNUOI,14540
+biotite/structure/io/mol/header.py,sha256=Ee78HGDy6DHQEaOh2AGyG0gQGsoMfqLPnfoCo0CwsyY,3545
+biotite/structure/io/mol/mol.py,sha256=Uc4gHxrVTzzRns7gou6cPQSlDeQDPUKlf1z_xvsXarU,5610
+biotite/structure/io/mol/sdf.py,sha256=yV0ROsMsMAN0Y6rgLSri4KVsHwxoBrln4ANldqihMek,33915
+biotite/structure/io/netcdf/__init__.py,sha256=BVUimn1EklpgdoCFE5sC-H4E47exDe_xIviMeGnn_tk,363
+biotite/structure/io/netcdf/file.py,sha256=8jht6qCgw0Q7q1-WaQ1iCBjc1QLzjrwpppe3uBZhZ1Y,2256
+biotite/structure/io/pdb/__init__.py,sha256=UqePAxP48oww8SEexxr6JlugRua8wgOryAvxmHd58f4,753
+biotite/structure/io/pdb/convert.py,sha256=zbeLuv1z0McJclYPBj5Zb-cjn5N697OSYSS7wwcwSP8,14216
+biotite/structure/io/pdb/file.py,sha256=jB_NOjXZkfwnYqaL54mTUrXBDuY1asyRxKENFtBJB6c,55938
+biotite/structure/io/pdb/hybrid36.pyx,sha256=U7qPRDd71lvjN3Qtqm_0eHX6Ol5bfmmEns0VC0eiju4,8223
+biotite/structure/io/pdbqt/__init__.py,sha256=JiBnbhNHevtmVIwEeYBubOzK5xu1d9dSny7Zf3Aas74,456
+biotite/structure/io/pdbqt/convert.py,sha256=M2SytCYO2ihvpcUQCqz4PD4DAKwCPxcjGbhFhJjbDZY,4121
+biotite/structure/io/pdbqt/file.py,sha256=HsU8inlW2ukK29Tme2RDEyxAyw3-yyqQH0dkXPHTvGk,27333
+biotite/structure/io/pdbx/__init__.py,sha256=0G68Qdc29KdXt0R9di2uBv4r173kuXXqGCbMtDdth0E,740
+biotite/structure/io/pdbx/bcif.py,sha256=vYZIaoZnLHL6Da6n0oKjWjHpwUt33LKvxPqbB7DQ3nw,21922
+biotite/structure/io/pdbx/cif.py,sha256=rGITCwhzG271cnB0Ik1-ktdqUfi0YJkkHJfYxxn-ufg,36070
+biotite/structure/io/pdbx/component.py,sha256=MiVzeqTI9FHl8hbbpQkOGmlHyhtmwW4V18nQVcL-Quk,8649
+biotite/structure/io/pdbx/compress.py,sha256=N3oHoysqLSEw2CKVFYEc_ZWXMfWYn_fejL2oI4xHgK4,13769
+biotite/structure/io/pdbx/convert.py,sha256=Dbx6Xc0AC5vJRP76Y_ZyxkWyvy31eRoOP32_ma-94pw,83288
+biotite/structure/io/pdbx/encoding.pyx,sha256=72V1cGoz1bXvW9mA4qxJrnNFftSXQ4SkkqDyiNHWB8o,34686
+biotite/structure/io/trr/__init__.py,sha256=xp4FpuAy_ESqzVWyugRXUHZ0iF8j5ox6EfCxSWhkcUY,372
+biotite/structure/io/trr/file.py,sha256=XcdYOf9M2tjRXMM87p9U7jMdQb0PlTFvDHXHgSdjbl8,1278
+biotite/structure/io/xtc/__init__.py,sha256=P17UBQnG-KmOlScHp46FXAb5i7d-ZCMlyljcOkFolMw,370
+biotite/structure/io/xtc/file.py,sha256=X4iIDjAWn1ZySg3NjbPeSMNByoyH1y8asmtqcBYycpE,1278
+biotite/sequence/codec.cp314-win_amd64.pyd,sha256=_xVwSvsuFzBnDZJ-5KsyTyLp6MGHqk5dqYUtiGXM_jc,224256
+biotite/structure/bonds.cp314-win_amd64.pyd,sha256=PNbmmM3-gOsHUteylfNYH-URSJ3AviyC5obq3ZXBTW4,415232
+biotite/structure/celllist.cp314-win_amd64.pyd,sha256=LLOthBJygYyzCcffIUtsAunux2Z1YMskNL8gjNz6wrw,233472
+biotite/structure/charges.cp314-win_amd64.pyd,sha256=MJ5PxLVwHXtlK5BXyMW6A4rBcwknHxQ6u6nk-c8_v4g,193024
+biotite/structure/sasa.cp314-win_amd64.pyd,sha256=UzRNfsUTxo1aYVPncj_MxOZDTPln0VIdgb8DXNc_5Y4,177152
+biotite/sequence/align/banded.cp314-win_amd64.pyd,sha256=xLe6Wp0B3zQeupNX2_i3_X5k1ttNHa2FGFybwcH1AOE,422400
+biotite/sequence/align/kmeralphabet.cp314-win_amd64.pyd,sha256=3ApN8nRv2vGbvOd-vdsqwJZxjPCIAfTwelZWyAMBGHg,283648
+biotite/sequence/align/kmersimilarity.cp314-win_amd64.pyd,sha256=3b7GzlMJblFGOYnnekzASLuqNVuEznMXOPbGBXOkdBU,159744
+biotite/sequence/align/kmertable.cp314-win_amd64.pyd,sha256=l2hswNWTqt29FePc_-8xkLBF16ilqSmzJTQ8iXNc664,516096
+biotite/sequence/align/localgapped.cp314-win_amd64.pyd,sha256=fWVW4yHAdKHLginXWEuhTbR4ob6JBiKOEvBkjtf6ir8,861696
+biotite/sequence/align/localungapped.cp314-win_amd64.pyd,sha256=q0K2erRJa_bqIPLoFMm4wtTlbhrUEHR1eAW9l36WQgU,231936
+biotite/sequence/align/multiple.cp314-win_amd64.pyd,sha256=c8dcR-qd0qz1G95V-5pbdVsxO5MgF66697l1vWO08sI,345600
+biotite/sequence/align/pairwise.cp314-win_amd64.pyd,sha256=O1xDGvBpcyDCAN8lLcgOLltMgubb_JZaQs4gXQulQ84,455168
+biotite/sequence/align/permutation.cp314-win_amd64.pyd,sha256=_xNwKTbN-DZWxIg4BpZzWlTfzyrsD9juRbCmnlfloWk,164864
+biotite/sequence/align/selector.cp314-win_amd64.pyd,sha256=FVsP5-hoSeRNl0n9quKojFAhVAK4Mdm1g2ZYwiInKFQ,223232
+biotite/sequence/align/tracetable.cp314-win_amd64.pyd,sha256=e201hNZDvlvHHJMQGd-8j9AbZAoGFHj8omDRfS1o29k,141824
+biotite/sequence/phylo/nj.cp314-win_amd64.pyd,sha256=P_oUmZMINQ53jdNk6RdyCBJMPy_CCuLEyQvGZ1tF0PM,159744
+biotite/sequence/phylo/tree.cp314-win_amd64.pyd,sha256=N8EHgEjVA5LdLZEFkp0HghWrnbfSCwTB-hK8eNWLn1c,185856
+biotite/sequence/phylo/upgma.cp314-win_amd64.pyd,sha256=KptsqBstYZ7_AjDfqhCfcyA5KQUmeeRVpvrWwl4tjOM,153600
+biotite/structure/io/pdb/hybrid36.cp314-win_amd64.pyd,sha256=vDHgbIMUrashxv3IS3wFxL-6MtQNvsBCCBPAkQqsgUE,143360
+biotite/structure/io/pdbx/encoding.cp314-win_amd64.pyd,sha256=6caqg38c35M42LZIsJQWBbWJG0eojD9UPd3FAVjwOHU,849408
+biotite-1.6.0.dist-info/METADATA,sha256=oAVaMN_ZBCBWpfAXsvlYc4w8d6N87HFqqY9ElqSpdFw,5525
+biotite-1.6.0.dist-info/WHEEL,sha256=LR-BXR6Y7RHwx25XnfVtWJgLKsH1k3ffjf7z4wgpTE8,97
+biotite-1.6.0.dist-info/licenses/LICENSE.rst,sha256=wDDtR8LuBedgqNIor2N5YGv4nj9flZltCDSu2fhjGbo,1564
+biotite-1.6.0.dist-info/RECORD,,

biotite-1.6.0.dist-info/WHEEL

@@ -0,0 +1,4 @@
+Wheel-Version: 1.0
+Generator: hatchling 1.28.0
+Root-Is-Purelib: false
+Tag: cp314-cp314-win_amd64

biotite-1.6.0.dist-info/licenses/LICENSE.rst

@@ -0,0 +1,30 @@
+BSD 3-Clause License
+--------------------
+
+Copyright 2017, The Biotite contributors
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without modification,
+are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+this list of conditions and the following disclaimer in the documentation and/or
+other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors
+may be used to endorse or promote products derived from this software without
+specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.