biotite 1.4.0__cp312-cp312-win_amd64.whl → 1.5.0__cp312-cp312-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- biotite/application/dssp/app.py +63 -6
- biotite/database/afdb/download.py +12 -6
- biotite/database/rcsb/download.py +1 -0
- biotite/database/rcsb/query.py +2 -2
- biotite/sequence/align/banded.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/kmeralphabet.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/kmersimilarity.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/kmertable.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/localgapped.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/localungapped.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/multiple.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/pairwise.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/permutation.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/selector.cp312-win_amd64.pyd +0 -0
- biotite/sequence/align/tracetable.cp312-win_amd64.pyd +0 -0
- biotite/sequence/codec.cp312-win_amd64.pyd +0 -0
- biotite/sequence/phylo/nj.cp312-win_amd64.pyd +0 -0
- biotite/sequence/phylo/tree.cp312-win_amd64.pyd +0 -0
- biotite/sequence/phylo/upgma.cp312-win_amd64.pyd +0 -0
- biotite/structure/atoms.py +1 -1
- biotite/structure/bonds.cp312-win_amd64.pyd +0 -0
- biotite/structure/celllist.cp312-win_amd64.pyd +0 -0
- biotite/structure/chains.py +34 -0
- biotite/structure/charges.cp312-win_amd64.pyd +0 -0
- biotite/structure/filter.py +2 -1
- biotite/structure/geometry.py +164 -2
- biotite/structure/info/atoms.py +8 -0
- biotite/structure/info/components.bcif +0 -0
- biotite/structure/io/pdb/convert.py +1 -0
- biotite/structure/io/pdb/file.py +16 -2
- biotite/structure/io/pdb/hybrid36.cp312-win_amd64.pyd +0 -0
- biotite/structure/io/pdbx/bcif.py +1 -1
- biotite/structure/io/pdbx/cif.py +1 -1
- biotite/structure/io/pdbx/compress.py +13 -9
- biotite/structure/io/pdbx/convert.py +17 -6
- biotite/structure/io/pdbx/encoding.cp312-win_amd64.pyd +0 -0
- biotite/structure/io/pdbx/encoding.pyx +39 -8
- biotite/structure/residues.py +173 -1
- biotite/structure/sasa.cp312-win_amd64.pyd +0 -0
- biotite/structure/segments.py +39 -3
- biotite/structure/util.py +14 -22
- biotite/version.py +16 -3
- {biotite-1.4.0.dist-info → biotite-1.5.0.dist-info}/METADATA +1 -1
- {biotite-1.4.0.dist-info → biotite-1.5.0.dist-info}/RECORD +46 -46
- {biotite-1.4.0.dist-info → biotite-1.5.0.dist-info}/WHEEL +0 -0
- {biotite-1.4.0.dist-info → biotite-1.5.0.dist-info}/licenses/LICENSE.rst +0 -0
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@@ -2,7 +2,7 @@ biotite/__init__.py,sha256=gzqOy5P7Zf667uYuUwqjLLW0GiBdqc23NLcZaXMuHKw,563
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biotite/copyable.py,sha256=Qnja44k58dAc3WkIUM0svqrbvqO9pSV-Atr9MUJSoCI,1968
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biotite/file.py,sha256=ktpRUk0OH5_wKIJHtCX3zDjXeJ3eQ4ycDjpp7HttUYM,6977
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biotite/setup_ccd.py,sha256=9StRz4qPVdTJNrPUoA_liwvkKnTb8O0U8PDxt1tDVwc,6248
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biotite/version.py,sha256=
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biotite/version.py,sha256=a0LCpMUrWvoHmGZMFOnfkJM72arixdqmkpppsg9N0JI,738
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biotite/visualize.py,sha256=z4lBfJAt5YxGqtgxgcLHKMwVcE4u6fqExEyrOHcSiaY,14330
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biotite/application/__init__.py,sha256=Rei3EwlpCnC_cJNQoTJYY_Gw_qLdsqgnRxV5b1slHJU,3148
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biotite/application/application.py,sha256=J9ydVvN_5C3nYuLl12EPBhM67i0GQm6MPy0F1K-jdgc,8372
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biotite/application/clustalo/__init__.py,sha256=UtEQiS9nDZF9-Sup3kbi06mTjv6YRD9Qbu5A722bNlY,338
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biotite/application/clustalo/app.py,sha256=hBnmdh2nhA1ipxz4OzVZ52UMyA0hqxf_MAej3bygbWU,7637
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biotite/application/dssp/__init__.py,sha256=smuKF9_8g5xzY-MFjYXTYa3wbTfQD4g6L3TDCfMTr8w,335
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biotite/application/dssp/app.py,sha256=
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biotite/application/dssp/app.py,sha256=0HwYT2XDo8nPPtixlLUfL-rPAZkt4wjtMKEuogQQ57Q,7828
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biotite/application/mafft/__init__.py,sha256=urPUmmuKAsB9DQeEeaj8EDt3uL0UjgBSo76H2HnLsLs,327
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biotite/application/mafft/app.py,sha256=W_iWXuaO0CaCFpnTyawlmQ1P0wt9pnGnwr-AzAudLM0,3397
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biotite/application/muscle/__init__.py,sha256=26qqctlXpZqoFBD1K_y_Zv7QZfDdMHOodGAXW20r42Q,351
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biotite/database/__init__.py,sha256=N3PuLKuEbQ0J55CddwryBGiLfYSazC697F8KnxizrKY,748
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biotite/database/error.py,sha256=L_FvDa-F4XUaCIVo6ZtLXIMn6P-cv783lvxR_Rtluqw,426
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biotite/database/afdb/__init__.py,sha256=SMcUJ0mPNdc-bnnW3wlsw7sDyBwGfU-_2Z2Dt_nB6xo,345
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biotite/database/afdb/download.py,sha256=
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biotite/database/afdb/download.py,sha256=kXhNvxKQJETZlbBTdNUPlmMjPyF32adr5PIv_HPVZHw,6876
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biotite/database/entrez/__init__.py,sha256=88kXhS1XqXb4exnfZIaKD98t3RH3gEZBiNR-aBhl-OE,403
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biotite/database/entrez/check.py,sha256=3JQZshjekA1woJll6UefEsUZ8kMw-MG1uh86jGgDomQ,1913
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biotite/database/entrez/dbnames.py,sha256=uQ5t5PCb1qrAmAdh8xWzO0WPWY3DybkW-JS4BRjQiR0,2873
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@@ -49,8 +49,8 @@ biotite/database/pubchem/error.py,sha256=zQKHntwQDkcdm2ImKQgta2V45KeUaFfmM8tTaVw
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biotite/database/pubchem/query.py,sha256=NJoFI-feTXivZfa6AoJGJDrYA6v_CEQSQjR5dDExvTM,26905
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biotite/database/pubchem/throttle.py,sha256=V4RzypMfh1IaBC8yZrH1l8W1k7v2KLpj1_fK94k-__w,3384
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biotite/database/rcsb/__init__.py,sha256=BKYOAhSIX1zb00wp_6bw30M7XGliu64B35Dm2Gf-A14,345
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biotite/database/rcsb/download.py,sha256=xqaazuObTNsuhcebeJhvn6_kRomjnIET-wTklEGQ4q4,5918
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biotite/database/rcsb/query.py,sha256=A0omwS_Ax4Jd0bvgpuRW8f-NW5_5LS59ehTQQJphgR4,33860
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biotite/database/uniprot/__init__.py,sha256=0U1mt1nphhPZomlauOeMEVDfFx-6Npyi2eGsf6ztH6E,347
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biotite/database/uniprot/download.py,sha256=7hv050jxaeVQpmKiAEG_pRsyEtHbiTH-6Qc1VUsjBpk,4360
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@@ -239,19 +239,19 @@ biotite/sequence/phylo/nj.pyx,sha256=YOseJP7fKCnqhh8w3mK1z3fw6cKF5sU5oRkb1D3X9vI
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biotite/sequence/phylo/tree.pyx,sha256=kmT2kO9cH3svQOxsyuPLfbUsWnTNdfVrx5xaxcmTC3I,40374
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biotite/sequence/phylo/upgma.pyx,sha256=llgc-9fEOU-D1a-ESMSIAoPjHvsd_L0-GnwkL-uzWNc,5376
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biotite/structure/__init__.py,sha256=nTlutppQQCPYYPH0MXB104--L70rOPUj6P8CcRDyUKA,5623
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biotite/structure/atoms.py,sha256=
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biotite/structure/atoms.py,sha256=O44og4-KvdmHv2ogAHkCRo9p-D228XxWvy2ueXjL8Ro,52399
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biotite/structure/basepairs.py,sha256=4IfbB0yE7-a1cGnMmYwpCu53zVBiJBOyGJ-TxzzigmY,51311
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biotite/structure/bonds.pyx,sha256=b3MKKo_ttNUNfoDCCaxrYKNhpNgwOcPdGe2pd-ZrreA,73827
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biotite/structure/box.py,sha256=8JjPHYdc0_SQsMSb6i05GmghW8O0KQZ20ZrSgtKYuXo,24120
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biotite/structure/celllist.pyx,sha256=tZXwbuN1QACGG2lHiA71ZMtfcdcvypoxCyRdodKFvyU,35427
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biotite/structure/chains.py,sha256=
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biotite/structure/chains.py,sha256=uEGd7AHk-UHjQm1o_vYSeSWs5tbu7YpOv2LFi1BSpn0,9657
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biotite/structure/charges.pyx,sha256=ZqQeMaSr0kjgBWRN_mYWBXV6wYtglADRrvY4ZQ0KKSU,19341
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biotite/structure/compare.py,sha256=Sy9xVcDY0sELBHcVfvXV9fn6OawgUjGGyKOTnWwavqM,28120
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biotite/structure/density.py,sha256=bCRVos_1LF2Uqq8fmVnZNhRUdDupdTXgPem-bkca24s,4306
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biotite/structure/dotbracket.py,sha256=1aOy386N6H666YK_vVaE1Ed28Xx9-OlW9jWLI51v0U4,7411
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biotite/structure/filter.py,sha256=-5okdIyY5TmLQzeA2ra5LZ1e1N_VVdZTGJqLWhDAlww,18717
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biotite/structure/geometry.py,sha256=ycXKiQKahVmUMCmUx985z44bck3CzgLS6vULhNKN9c8,30098
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biotite/structure/hbond.py,sha256=prj1l763yMQGPWL41HoLtSpiDveHoMVP7dlUNYO9pjE,15617
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biotite/structure/integrity.py,sha256=v1lJrEcvH_bdV0-5ToIKBPWKV5Mq-TDSlSFZgRjn614,6976
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biotite/structure/mechanics.py,sha256=hg1wre3uPAuXfyZ976mryvd0_Db1UE-iTLE9qjfwijw,2659
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biotite/structure/pseudoknots.py,sha256=8kknr_m4eUsVdJUe2gPRofWkWP9NYgOU-NAmJw2oPEc,22716
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biotite/structure/rdf.py,sha256=XAkbnbfk0wx_cIlrDYXBMUzzShgICUCpyPPfTNviWBQ,8349
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biotite/structure/residues.py,sha256=ly9chJtAtdfebJ2mVOAWMCXOjUG6-ktXlChl8l0dRxE,29119
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biotite/structure/rings.py,sha256=XF4wH_nCIswVgtC22gF81nxDvwyWO2gRKtNLoJgxiIs,16035
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biotite/structure/sasa.pyx,sha256=Vp-WbGMa2HduTf9KDOoR4IQnarUGemVqjVyn_PbFGhU,13239
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biotite/structure/spacegroups.json,sha256=C3O--eJKKKOScmCyqPAElFh-qTlMN5f4EkzxWfhaigs,53125
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biotite/structure/spacegroups.license,sha256=-9GpM4nLKzKQgPXGf1PNUXhCM8CQUm79QWFA40KG_aY,1323
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biotite/structure/superimpose.py,sha256=cE2Q3E0YXzYh6KDhYcBbBi2O1c1O2ZIPUbBlGNEvh2Q,20073
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biotite/structure/transform.py,sha256=WZ6fysoP2OR-tpJxSjNmCkUVqdBwCCnCYRyWa4hPP1k,27711
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biotite/structure/alphabet/__init__.py,sha256=UxJZ1_WsI1SPs89ZGv4Xmr-n0pWwlQcBBglfJEXzanY,953
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biotite/structure/alphabet/encoder.py,sha256=OMQXiMo6xnhIsWoCZ2xKvGpV28k24lM8LhL9cZDDFNE,11715
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biotite/structure/alphabet/encoder_weights_3di.kerasify,sha256=m4JF4oVWBbiu6r8DM9ONQ5Bmcbqwr5dxKfqYThOmHpk,1032
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biotite/structure/info/atom_masses.json,sha256=DJ2YMCN4Fvn0zzT91N6TotoLMPm_EkeOF23Yjb5mvGg,2504
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biotite/structure/info/ccd.py,sha256=o0Jb7YYJbYpyljfNGiqXF6bXP7IUlCY3cRMQj1EyWvg,6051
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