biotite 1.4.0__cp312-cp312-macosx_11_0_arm64.whl → 1.5.0__cp312-cp312-macosx_11_0_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- biotite/application/dssp/app.py +63 -6
- biotite/database/afdb/download.py +12 -6
- biotite/database/rcsb/download.py +1 -0
- biotite/database/rcsb/query.py +2 -2
- biotite/sequence/align/banded.cpython-312-darwin.so +0 -0
- biotite/sequence/align/kmeralphabet.cpython-312-darwin.so +0 -0
- biotite/sequence/align/kmersimilarity.cpython-312-darwin.so +0 -0
- biotite/sequence/align/kmertable.cpython-312-darwin.so +0 -0
- biotite/sequence/align/localgapped.cpython-312-darwin.so +0 -0
- biotite/sequence/align/localungapped.cpython-312-darwin.so +0 -0
- biotite/sequence/align/multiple.cpython-312-darwin.so +0 -0
- biotite/sequence/align/pairwise.cpython-312-darwin.so +0 -0
- biotite/sequence/align/permutation.cpython-312-darwin.so +0 -0
- biotite/sequence/align/selector.cpython-312-darwin.so +0 -0
- biotite/sequence/align/tracetable.cpython-312-darwin.so +0 -0
- biotite/sequence/codec.cpython-312-darwin.so +0 -0
- biotite/sequence/phylo/nj.cpython-312-darwin.so +0 -0
- biotite/sequence/phylo/tree.cpython-312-darwin.so +0 -0
- biotite/sequence/phylo/upgma.cpython-312-darwin.so +0 -0
- biotite/structure/atoms.py +1 -1
- biotite/structure/bonds.cpython-312-darwin.so +0 -0
- biotite/structure/celllist.cpython-312-darwin.so +0 -0
- biotite/structure/chains.py +34 -0
- biotite/structure/charges.cpython-312-darwin.so +0 -0
- biotite/structure/filter.py +2 -1
- biotite/structure/geometry.py +164 -2
- biotite/structure/info/atoms.py +8 -0
- biotite/structure/info/components.bcif +0 -0
- biotite/structure/io/pdb/convert.py +1 -0
- biotite/structure/io/pdb/file.py +16 -2
- biotite/structure/io/pdb/hybrid36.cpython-312-darwin.so +0 -0
- biotite/structure/io/pdbx/bcif.py +1 -1
- biotite/structure/io/pdbx/cif.py +1 -1
- biotite/structure/io/pdbx/compress.py +13 -9
- biotite/structure/io/pdbx/convert.py +17 -6
- biotite/structure/io/pdbx/encoding.cpython-312-darwin.so +0 -0
- biotite/structure/io/pdbx/encoding.pyx +39 -8
- biotite/structure/residues.py +173 -1
- biotite/structure/sasa.cpython-312-darwin.so +0 -0
- biotite/structure/segments.py +39 -3
- biotite/structure/util.py +14 -22
- biotite/version.py +16 -3
- {biotite-1.4.0.dist-info → biotite-1.5.0.dist-info}/METADATA +1 -1
- {biotite-1.4.0.dist-info → biotite-1.5.0.dist-info}/RECORD +46 -46
- {biotite-1.4.0.dist-info → biotite-1.5.0.dist-info}/WHEEL +0 -0
- {biotite-1.4.0.dist-info → biotite-1.5.0.dist-info}/licenses/LICENSE.rst +0 -0
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biotite-1.5.0.dist-info/METADATA,sha256=UUKw6ATrAZtUc-I5_CvIIate_rM_OP8QyhHmLKF2tjY,5525
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biotite-1.5.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
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biotite/version.py,sha256=sfeo6QRBwy3wEFaKhAEbFPpF98FLjoe4Car1c6NnghQ,704
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biotite/copyable.py,sha256=C7ycTQxqanxT0SmXhzy5OLp7NpZdNWHyokozdoVDGNA,1897
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biotite/__init__.py,sha256=rL8ZyaCUjOrECEvRxyHj8MOMp4FHMJ8n6KKgrYf5OAQ,545
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biotite/visualize.py,sha256=GSxIL8PLXMDlaULG-ckSghRifQnBnkseZ-OWsnuno4M,13955
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biotite/application/msaapp.py,sha256=6e88Q7vgGSK_5uKdOVPcZF6wMKDRGYEKrvc9tb0yjbs,11974
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biotite/application/dssp/__init__.py,sha256=lUf-A2rJzPLJYZQZGpZUt7HtA0M59KaX6zQSCrkhfF4,323
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biotite/application/viennarna/rnaalifold.py,sha256=QawXG9hYKQzdRt8-J_WiXUcoJx7Whps-iSCzq7DFJEA,10683
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biotite/structure/segments.py,sha256=7ORMe1q_2LFSP9efwAvIM3UhL0KhRlURXMnUGPfoJaw,10785
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biotite/structure/sequence.py,sha256=TlJiSH1AC9XETl3G24UkKl1FHfpWh1aPKsdxj4ZdiEs,4245
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biotite/structure/bonds.cpython-312-darwin.so,sha256=
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biotite/structure/mechanics.py,sha256=A7590nMLbsfp_pHvLukca_YV0Q6VcrfDRW_p58D8ZNY,2587
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biotite/structure/density.py,sha256=wGZFgqkK6Kdv0OzmmWz8eXPEVxPSFShxINWOOdehaIg,4197
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biotite/structure/rdf.py,sha256=Yf9PoWqSpNK3QsWqnCnOUBGL8WwKGOakgZ0pxj5UOiA,8104
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biotite/structure/celllist.cpython-312-darwin.so,sha256=
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biotite/structure/transform.py,sha256=i8xwMKfpHlN4hHFZBm7-U_nP5bLx_n1WgX8BQZ541_k,26975
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biotite/structure/geometry.py,sha256=LojdE15YFkFAUhVH65GQS-UJDMTG8yurrB7H5pfalTA,29281
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biotite/structure/sasa.cpython-312-darwin.so,sha256=rmORwvEWh6eiThVMTrYE5Ky5euvFUbtTw-8GcL1KF3w,273336
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biotite/structure/pseudoknots.py,sha256=X3LrVSJuV1EGXuKMstkzrJQ86otbC_6-vX215fKygiU,22094
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biotite/structure/integrity.py,sha256=-HaFg2ckyVgSyHEyHqqNQ8fOwnhVzieYsMgyTCdzCFo,6763
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biotite/structure/compare.py,sha256=JFIE2Ve8JRTxsAK9eTODgWNPi6AuiFMe9rRIOohe6OU,27437
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biotite/structure/dotbracket.py,sha256=jl_Zqp0IINBwFPtZ0XK8rvmGmwebncbYpF26vJldIZY,7198
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biotite/structure/spacegroups.json,sha256=SxP_900pi9iQruI_cgE1CTxl4k5kqOppv-nDyx64d3k,51558
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biotite/structure/io/util.py,sha256=ivgxUZI4-Muv4cC6cLQdkYyk0TRhcnHi7J5DIX95BmI,1016
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biotite/structure/io/trr/__init__.py,sha256=5WNHMGiHNNzYdoiybE6Cs0bYAcznS5D3ABu7gHDJ__A,359
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biotite/structure/io/pdbx/bcif.py,sha256=8dQyPCtQho4tV2dRK52hOsifOOGnXPMLI7SDJt_UgaU,21248
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biotite/structure/io/pdbx/encoding.pyx,sha256=gqTnq2qONPRdv5lz2JkJIhjK4k3J9k-Fp8YOVbeE9N0,33609
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biotite/structure/io/pdbx/cif.py,sha256=1hY4-brq_kX_Hg5-OJm600zcdXV6KDidZhTdHKQunYY,34979
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biotite/structure/io/pdbx/component.py,sha256=xnVVqpbBAj8ED4SCYx1tF6jHXCRVK8NWHcoG-fH7QVg,8398
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biotite/structure/io/xtc/file.py,sha256=PknO2-xzLgKTBW5Gig5Hv1HUZ4BIHRf2con2MLxEwNU,1235
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biotite/structure/io/mol/mol.py,sha256=qp_yQ6tUIMmJNjzCqtle92mw_VJm4hkS0TRRJxAegS0,5461
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biotite/structure/io/mol/sdf.py,sha256=09GRt6OGdsWH-ccgR8tXVvDM6pCUhnsZdPRv9Dx_QQU,32975
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biotite/structure/io/pdb/convert.py,sha256=nnRZl5cG5N6UQURG_oSfLZ1z32uXeiF9pOMcpOTFNcI,13826
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biotite/structure/io/pdb/hybrid36.pyx,sha256=BKV7oh0xrrjqVrkhTn7KEolon57fUhlG4Yf0Tf22wuU,8036
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biotite/structure/alphabet/pb.py,sha256=ksJKkYj4y3jzfvgFUF7g99W981RvH46RXKe3RW5fkR8,5994
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biotite/structure/alphabet/unkerasify.py,sha256=P-EY9gbWglJHPF9xp_SivF67bIQE73403htyJMu4-nE,3301
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@@ -338,7 +338,7 @@ biotite/structure/alphabet/encoder.py,sha256=2BWLMdGBr2bHw09vMhbzPztMKSnVt8UhUf8
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biotite/structure/alphabet/pb.license,sha256=OkDCfXO06BfooLXYC3iF7LXXB_Uqqex1B2gjUEFdUZI,1091
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biotite/structure/alphabet/layers.py,sha256=Y1Y8G2LqqzC7M0kNUv8k-EXTVVKGLnPDJKdRrVEf3H4,2087
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biotite/structure/info/components.bcif,sha256=mQrO6PEOkPNw2i1DHp5qugNyDx0g-2d_uV-T4KD1bwI,62070945
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biotite/structure/info/misc.py,sha256=hAvTh8KdkPGsh9Y2mGxDRRt9ZDPgCoAGLHr1smCANlg,3428
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biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
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biotite/structure/info/__init__.py,sha256=k08kdsKlrxaVQ9x8MjEXoVFaXl1J8OcpLf6iG7dUgOY,698
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biotite/structure/info/standardize.py,sha256=UEvlRB9XDPO0S4usROlSl51DjuadrTslFBp2jqcMqEw,7739
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biotite/structure/info/bonds.py,sha256=6pXAZPeKPL2pwFi5fhSyTwh_gd5fToIgvwguGffrE-0,4644
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biotite/structure/info/masses.py,sha256=HOdaeFZkd5LSrl00025S1MwXT7im8V-s0bU54tr1te8,4555
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biotite/structure/info/ccd.py,sha256=A3-YomYJS3bbAfntLpvwLkmCgQFjR2suMwFnGQsgPXg,5851
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biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
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biotite/structure/graphics/rna.py,sha256=1fa-_ROxHIdCQu4nFEmDWqWnQlXA6iZDZDprKST_h_g,11842
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