biotite 1.3.0__cp313-cp313-macosx_11_0_arm64.whl → 1.5.0__cp313-cp313-macosx_11_0_arm64.whl

{biotite-1.3.0.dist-info → biotite-1.5.0.dist-info}/RECORD

@@ -1,4 +1,8 @@
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+biotite-1.5.0.dist-info/RECORD,,
+biotite-1.5.0.dist-info/WHEEL,sha256=s0cTlxH34_QlWnER2EjFUsHTyO2KntcvTrX9yBtBmNo,133
+biotite-1.5.0.dist-info/METADATA,sha256=UUKw6ATrAZtUc-I5_CvIIate_rM_OP8QyhHmLKF2tjY,5525
+biotite-1.5.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
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 biotite/copyable.py,sha256=C7ycTQxqanxT0SmXhzy5OLp7NpZdNWHyokozdoVDGNA,1897
 biotite/__init__.py,sha256=rL8ZyaCUjOrECEvRxyHj8MOMp4FHMJ8n6KKgrYf5OAQ,545
 biotite/visualize.py,sha256=GSxIL8PLXMDlaULG-ckSghRifQnBnkseZ-OWsnuno4M,13955
@@ -21,23 +25,23 @@ biotite/database/pubchem/query.py,sha256=Z_DVRY62HhelCtMr3xwUOZBBUpNCwTKVC8ey9dG
 biotite/database/pubchem/download.py,sha256=p1UtPJ1YuccDWLsXE4Zd410RwqgbwCHj5ZDcISQ6-5U,9870
 biotite/database/pubchem/__init__.py,sha256=xjwfutIL4-JeTs7v4wCkRyy5q4KE7fGWDvo46ubkXt4,669
 biotite/database/pubchem/throttle.py,sha256=HXf2l7EW5RLdW0bg72uSdXCDZXFXOE49akhfgKhEdc8,3286
-biotite/database/rcsb/query.py,sha256=Ar2uZRuOCMm0RQeMATHfAeTeW5G8eNfg2Iy5qMMZ8JU,32895
-biotite/database/rcsb/download.py,sha256=AtRljEV60NReeuWno-YFNrzrpFY_hetghO31-8VojtE,5676
+biotite/database/rcsb/query.py,sha256=svweSjUNDOuZRLDfYTN17goFPOeHKhHs_qPvi9VkKs8,32897
+biotite/database/rcsb/download.py,sha256=a2Epoari3qItLTbBpjKWgBL-H4tbOAP9UQlUnhkXSS4,5757
 biotite/database/rcsb/__init__.py,sha256=sTJnL4vYwhO7gSszMuT_Lr91uwX0wM1h-fZWiZkITYA,332
-biotite/database/afdb/download.py,sha256=sIaGz0hTj1MBA_XIw9HCP6NGnPfNAyPgryOhLuRa9i8,6367
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 biotite/interface/warning.py,sha256=rU1F-b1MeIj1OWaK6wMeuM_YE-WKNGqo2TehjTr10KM,577
 biotite/interface/pymol/startup.py,sha256=8W0wIx13MGqGNvwTTT7ogmgypXCO48PI5w-DVPdS9jw,4619
 biotite/interface/pymol/shapes.py,sha256=Q34C5H5PkH4XbnyymwbJYp9iFD2Idj2a_qzDRA8tohQ,6066
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 biotite/interface/pymol/convert.py,sha256=ldLXSiFdwhEkoZkTtLFOMvymIh9oLniChve54SbHJLA,6044
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 biotite/interface/pymol/display.py,sha256=KJfCM9-hzvFdC5KFxvG5-oEXd0MIaf3Ocr3dMQVoipY,8458
 biotite/interface/pymol/cgo.py,sha256=wlG1GkbHAGYVdzaOUPQ5KzI-29lrDkutt0NRw7PIq-8,9859
 biotite/interface/rdkit/__init__.py,sha256=K2gVw_wrbIU0v-I3RgRvrihdtcpFfL9_t-IlObLuCMk,532
-biotite/interface/rdkit/mol.py,sha256=T4Nnc3ttQFfy-4YbbSRLuTpcAhahWjqQGwM7fypouEs,19644
+biotite/interface/rdkit/mol.py,sha256=iMPR8U5girjnCa2-xLHQG1duw-tR3bUruVQRa1O27fc,19629
 biotite/interface/openmm/system.py,sha256=V-SDc1YDa6nKHcREXz1cGAN7jZJ2X1cPf0gazz_Gv6s,7018
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 biotite/interface/openmm/state.py,sha256=jmdLw1xc7TQbgeOnZGgSgdmD_rR9VEnMqhX0Wnw_1Jo,2723
@@ -48,7 +52,7 @@ biotite/application/__init__.py,sha256=gOy5iGp5uuKTd0qpR9LgsmanB3ZfdQaTnZcKMRDwS
 biotite/application/application.py,sha256=MLMft5z1ocBMsTOXkUg-ZeZj0jC8l6WHrYSjgkE7iW8,8096
 biotite/application/msaapp.py,sha256=6e88Q7vgGSK_5uKdOVPcZF6wMKDRGYEKrvc9tb0yjbs,11974
 biotite/application/dssp/__init__.py,sha256=lUf-A2rJzPLJYZQZGpZUt7HtA0M59KaX6zQSCrkhfF4,323
-biotite/application/dssp/app.py,sha256=tHoG8uFmX8WaBHm0Fhjc7D0NXEaMa-zkLvwFzyP4FQk,5323
+biotite/application/dssp/app.py,sha256=Xs0A764NKchkGFVEfB4bqBinFC5r2wNyAmKEk4G06dQ,7612
 biotite/application/viennarna/rnaalifold.py,sha256=QawXG9hYKQzdRt8-J_WiXUcoJx7Whps-iSCzq7DFJEA,10683
 biotite/application/viennarna/util.py,sha256=racSlWGMtRRNtc_wh-ggIJWPDNoxIqwejc_Ztgusk8Q,2635
 biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
@@ -76,7 +80,7 @@ biotite/sequence/sequence.py,sha256=eIZ7Ugz9IwXlWXs_HC2NGyAtDDcP-Vf1z82jynT_PPE,
 biotite/sequence/profile.py,sha256=f-KYMVtSB83O5J0Jy87Nzetd4axZDVsUcMSES2J7MJY,19249
 biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
 biotite/sequence/__init__.py,sha256=fSWhobaPGRMJI6-8UYFpjguxVtP4O4cAHmiRxNAGzYI,3423
-biotite/sequence/codec.cpython-313-darwin.so,sha256=YJkibzx1uaP_KQEy0f8myiFhCpxLV7_Do8KaK1kDrb8,283912
+biotite/sequence/codec.cpython-313-darwin.so,sha256=hArEwOnCle2O6DIzF1UXDrEkEqz_3hwJoBNHxz6gQL8,332040
 biotite/sequence/seqtypes.py,sha256=I5OaC9IOJoA9G610Tod67cgCWDQqTAgYpK1FHF8Ofok,23246
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 biotite/sequence/search.py,sha256=G__T-GHMJODWmgh87z5wxs_g9-t1DtvEOd-USp-Qizg,3088
@@ -97,36 +101,36 @@ biotite/sequence/io/genbank/file.py,sha256=5XvuJCd_FuI2zh03_bLbLSAuORNw4tXr7p9sG
 biotite/sequence/io/fastq/convert.py,sha256=x4rWn7WHdKxW1u7mwDgM8Z3qaML4lAO7r-JiMTQbvaI,3632
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 biotite/sequence/io/fastq/file.py,sha256=Q5jrBN21Fi0hp6rU5cc68kQPYc1jWdZfMwhx0Ze6oGw,17817
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-biotite/sequence/align/permutation.cpython-313-darwin.so,sha256=77FKZC3pklFCevooGBghXSdVqoNNMQFbsJ97av3Pms0,230512
+biotite/sequence/align/multiple.cpython-313-darwin.so,sha256=XGhGbF-0ylJVooe1VB54hsxYfMsqomHMvSerOa_UXpU,547824
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 biotite/sequence/align/matrix.py,sha256=A1PUA43ltUnvYqB_RO6WPbvAtCzZI3zSfeKHP3aVSNQ,22360
 biotite/sequence/align/permutation.pyx,sha256=xbbw5DJ7c5SXnuSUl2hJUMxzvinKP1Khc7CSdH5cEE0,10028
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 biotite/sequence/align/kmeralphabet.pyx,sha256=t4MKs3uIXGn_2AB8NRKQxY73RoBLDa-IlKVnSdANkCU,18636
 biotite/sequence/align/alignment.py,sha256=vf6Ldh0nevFkQ3dHJJRZw6_ZsqoWHHv-6M1Hy_DQgEs,22380
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@@ -247,47 +251,47 @@ biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9
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 biotite/structure/transform.py,sha256=i8xwMKfpHlN4hHFZBm7-U_nP5bLx_n1WgX8BQZ541_k,26975
-biotite/structure/geometry.py,sha256=7FtPNJtTUn691xw6kbVk90s8a9rAd98zC-rKD23ikdU,23676
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 biotite/structure/molecules.py,sha256=Ar4NF3r3VQwirFprTMItIdHeluMSlpKOpRanZ0EEsWI,15291
-biotite/structure/filter.py,sha256=cXeTVhK2lbbHq9KA-lvu2-TKENtHWoI1Qc2hpFxR71Q,17995
-biotite/structure/bonds.pyx,sha256=xho8dzXn40-1Qt0vbikeZsqYTNWfV4WOd17p_UbU6Ow,69759
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 biotite/structure/pseudoknots.py,sha256=X3LrVSJuV1EGXuKMstkzrJQ86otbC_6-vX215fKygiU,22094
 biotite/structure/basepairs.py,sha256=BT3_LHmerkRfzuQSU86MVTvDs0QZ0UjNJpopJm5VXBI,49908
 biotite/structure/integrity.py,sha256=-HaFg2ckyVgSyHEyHqqNQ8fOwnhVzieYsMgyTCdzCFo,6763
-biotite/structure/compare.py,sha256=irYBGnJHpcX_ETFUVNzlgHQpeGy_ihUGw7EEhWbCcDc,27353
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 biotite/structure/hbond.py,sha256=DhVGCm9s_nNHnHhvfNUl81ph77Y-SIeFY1GGf1kPeL4,15192
-biotite/structure/celllist.cpython-313-darwin.so,sha256=oNm4Ipy8DFJ_WfYP_r5ZdANRrVol91tDczOSJIKu_yU,319504
+biotite/structure/celllist.cpython-313-darwin.so,sha256=YOCWQUELackBzA_Kv6fA5QmGI6qIDDONqVhJdFKisLA,338048
 biotite/structure/dotbracket.py,sha256=jl_Zqp0IINBwFPtZ0XK8rvmGmwebncbYpF26vJldIZY,7198
-biotite/structure/residues.py,sha256=Fbng2Pxib4dgkijP6zREguDYwm8L0RxbbJxpuU-cv0U,21834
+biotite/structure/residues.py,sha256=DsI_ia4B2ZbWeBpxOvKxAJ3dlu7iYyiqgXIP8AkKjOs,28403
 biotite/structure/spacegroups.json,sha256=SxP_900pi9iQruI_cgE1CTxl4k5kqOppv-nDyx64d3k,51558
 biotite/structure/celllist.pyx,sha256=vRYrg7F1NqWmFatFuVrxXKUnySzCNhM2uMyI2fASOq4,34563
 biotite/structure/io/util.py,sha256=ivgxUZI4-Muv4cC6cLQdkYyk0TRhcnHi7J5DIX95BmI,1016
@@ -298,13 +302,13 @@ biotite/structure/io/dcd/__init__.py,sha256=tYiiTSmqDrsSgg_sZaoQgx2D8N9OeqlooxH4
 biotite/structure/io/dcd/file.py,sha256=jaU81fvGl4WG0zXB1dBKTOtSvFF3fS0kxeNR-wwpXlY,2224
 biotite/structure/io/trr/__init__.py,sha256=5WNHMGiHNNzYdoiybE6Cs0bYAcznS5D3ABu7gHDJ__A,359
 biotite/structure/io/trr/file.py,sha256=2LjaLoKYfNgyQGSEfQ1TdZQqaPyrBh3irbJdmEKFTMI,1235
-biotite/structure/io/pdbx/bcif.py,sha256=k7WtZNB4U9czi00P1EpELZh8ty6cXRezll3yXdmiYOQ,21137
-biotite/structure/io/pdbx/convert.py,sha256=zGJsDmcbfB0xpigeTK0hyWsPANPnEv6eezxmg3Y2Bg8,79897
-biotite/structure/io/pdbx/encoding.cpython-313-darwin.so,sha256=8voFjKJ2NoODuDGY6k0FSo4eV0oP7xs4KLnoIa2Yk4w,1055520
-biotite/structure/io/pdbx/encoding.pyx,sha256=D8jUdfLXkXxFmut3Eu6V5ZUxQlBGgCS-eIWD0hasPxw,32128
+biotite/structure/io/pdbx/bcif.py,sha256=8dQyPCtQho4tV2dRK52hOsifOOGnXPMLI7SDJt_UgaU,21248
+biotite/structure/io/pdbx/convert.py,sha256=gNdslGuHHQwixoacevhxLgUpCtY3AZEvSNUYvP0W3UQ,80733
+biotite/structure/io/pdbx/encoding.cpython-313-darwin.so,sha256=NcGmLMY64zDvO3s8viOfahL1JPHdrco4yEXOFamlT1I,1332096
+biotite/structure/io/pdbx/encoding.pyx,sha256=gqTnq2qONPRdv5lz2JkJIhjK4k3J9k-Fp8YOVbeE9N0,33609
 biotite/structure/io/pdbx/__init__.py,sha256=DlVXhrcuAF9A6Gim_JMccz-j8jDZuF2liDDA5cZxzx8,717
-biotite/structure/io/pdbx/compress.py,sha256=v5QbZIgd22FrdbazaL7DFdLBvkICwMI5G3FaRKqNUdA,13310
-biotite/structure/io/pdbx/cif.py,sha256=nTlgtU78Mb7IjEebwW-XuOAgEz9z5rAjD7A32IaEQek,34868
+biotite/structure/io/pdbx/compress.py,sha256=YAUaMsaXwmxpFOnbYgkrTl4k-k3PiBXyC6tKWAajxfI,13407
+biotite/structure/io/pdbx/cif.py,sha256=1hY4-brq_kX_Hg5-OJm600zcdXV6KDidZhTdHKQunYY,34979
 biotite/structure/io/pdbx/component.py,sha256=xnVVqpbBAj8ED4SCYx1tF6jHXCRVK8NWHcoG-fH7QVg,8398
 biotite/structure/io/xtc/__init__.py,sha256=ipZjsWBil-h2ujdlEobyI2jGy5xsfRVOPAyCsYAJ7G4,357
 biotite/structure/io/xtc/file.py,sha256=PknO2-xzLgKTBW5Gig5Hv1HUZ4BIHRf2con2MLxEwNU,1235
@@ -321,10 +325,10 @@ biotite/structure/io/mol/__init__.py,sha256=WvcNPDdf9W1zPyJ0tjTvGNxA83ht18uRQA8B
 biotite/structure/io/mol/ctab.py,sha256=yWhR81XMuWKrO3DVFG6hRgnvjOYQ7ituGTW7EnfDchs,14120
 biotite/structure/io/mol/mol.py,sha256=qp_yQ6tUIMmJNjzCqtle92mw_VJm4hkS0TRRJxAegS0,5461
 biotite/structure/io/mol/sdf.py,sha256=09GRt6OGdsWH-ccgR8tXVvDM6pCUhnsZdPRv9Dx_QQU,32975
-biotite/structure/io/pdb/convert.py,sha256=ECG8KFmduPN2xd7HWqJweYabn-IFdnhxVNtO3AkzLaQ,13800
-biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so,sha256=bWUW0DmOCfDgrvNv0ph77tFf-JPLNZDLFuaW_j2tw6k,209344
+biotite/structure/io/pdb/convert.py,sha256=nnRZl5cG5N6UQURG_oSfLZ1z32uXeiF9pOMcpOTFNcI,13826
+biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so,sha256=-AyGs8pjtsLMoqRBIPYWP6G8Eiw9h_cwyua5hU56Ajc,235904
 biotite/structure/io/pdb/__init__.py,sha256=5NbUMDRKIe7jJ2ByRHpMhJzY_vIasjSgO63Zxrpq8BM,733
-biotite/structure/io/pdb/file.py,sha256=4N6E-iNhSvbZ98HmvcS-dI9qUCnwoZD4NqxrfwGMMx4,53635
+biotite/structure/io/pdb/file.py,sha256=GCS8qD-efyXswe5acr2Erz3qurGfY52J60n06BqA7jc,54557
 biotite/structure/io/pdb/hybrid36.pyx,sha256=BKV7oh0xrrjqVrkhTn7KEolon57fUhlG4Yf0Tf22wuU,8036
 biotite/structure/alphabet/pb.py,sha256=ksJKkYj4y3jzfvgFUF7g99W981RvH46RXKe3RW5fkR8,5994
 biotite/structure/alphabet/unkerasify.py,sha256=P-EY9gbWglJHPF9xp_SivF67bIQE73403htyJMu4-nE,3301
@@ -334,7 +338,7 @@ biotite/structure/alphabet/encoder.py,sha256=2BWLMdGBr2bHw09vMhbzPztMKSnVt8UhUf8
 biotite/structure/alphabet/i3d.py,sha256=SLJkVWiKl-EXMcsv8gcKF4zujoR5L8sQRyo9fnrETPM,3009
 biotite/structure/alphabet/pb.license,sha256=OkDCfXO06BfooLXYC3iF7LXXB_Uqqex1B2gjUEFdUZI,1091
 biotite/structure/alphabet/layers.py,sha256=Y1Y8G2LqqzC7M0kNUv8k-EXTVVKGLnPDJKdRrVEf3H4,2087
-biotite/structure/info/components.bcif,sha256=ouff7fpRp47Fq6CYsKBZlLpHkaN6x6X6q-dVnRs7uro,59990720
+biotite/structure/info/components.bcif,sha256=mQrO6PEOkPNw2i1DHp5qugNyDx0g-2d_uV-T4KD1bwI,62070945
 biotite/structure/info/misc.py,sha256=hAvTh8KdkPGsh9Y2mGxDRRt9ZDPgCoAGLHr1smCANlg,3428
 biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
 biotite/structure/info/__init__.py,sha256=k08kdsKlrxaVQ9x8MjEXoVFaXl1J8OcpLf6iG7dUgOY,698
@@ -343,12 +347,8 @@ biotite/structure/info/radii.py,sha256=PGpl5WoaFBzAktxNodzb_mCz8jp0AwW3GNXk9jKN3
 biotite/structure/info/standardize.py,sha256=UEvlRB9XDPO0S4usROlSl51DjuadrTslFBp2jqcMqEw,7739
 biotite/structure/info/bonds.py,sha256=6pXAZPeKPL2pwFi5fhSyTwh_gd5fToIgvwguGffrE-0,4644
 biotite/structure/info/masses.py,sha256=HOdaeFZkd5LSrl00025S1MwXT7im8V-s0bU54tr1te8,4555
-biotite/structure/info/atoms.py,sha256=9uytsei3Y4zxExhnda4y4vuxmIO6gOndJYeXroC86yU,3010
+biotite/structure/info/atoms.py,sha256=8GoHM5owz0-Tnx9OzV8Q41sz-WU7TAJfy4sTgAW939Q,3271
 biotite/structure/info/ccd.py,sha256=A3-YomYJS3bbAfntLpvwLkmCgQFjR2suMwFnGQsgPXg,5851
 biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
 biotite/structure/graphics/rna.py,sha256=1fa-_ROxHIdCQu4nFEmDWqWnQlXA6iZDZDprKST_h_g,11842
 biotite/structure/graphics/atoms.py,sha256=988_URX4hfTE3oBOYgAvZruOrzogMPcFKiTT5RJL01E,8116
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-biotite-1.3.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534