biotite 1.2.0__cp313-cp313-macosx_11_0_arm64.whl → 1.3.0__cp313-cp313-macosx_11_0_arm64.whl

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Files changed (56) hide show
  1. biotite/application/viennarna/rnaplot.py +7 -7
  2. biotite/interface/openmm/__init__.py +4 -0
  3. biotite/interface/pymol/__init__.py +3 -0
  4. biotite/interface/rdkit/__init__.py +4 -0
  5. biotite/interface/version.py +23 -0
  6. biotite/sequence/align/banded.cpython-313-darwin.so +0 -0
  7. biotite/sequence/align/banded.pyx +1 -1
  8. biotite/sequence/align/kmeralphabet.cpython-313-darwin.so +0 -0
  9. biotite/sequence/align/kmersimilarity.cpython-313-darwin.so +0 -0
  10. biotite/sequence/align/kmertable.cpython-313-darwin.so +0 -0
  11. biotite/sequence/align/localgapped.cpython-313-darwin.so +0 -0
  12. biotite/sequence/align/localungapped.cpython-313-darwin.so +0 -0
  13. biotite/sequence/align/multiple.cpython-313-darwin.so +0 -0
  14. biotite/sequence/align/multiple.pyx +1 -2
  15. biotite/sequence/align/pairwise.cpython-313-darwin.so +0 -0
  16. biotite/sequence/align/pairwise.pyx +2 -4
  17. biotite/sequence/align/permutation.cpython-313-darwin.so +0 -0
  18. biotite/sequence/align/selector.cpython-313-darwin.so +0 -0
  19. biotite/sequence/align/tracetable.cpython-313-darwin.so +0 -0
  20. biotite/sequence/codec.cpython-313-darwin.so +0 -0
  21. biotite/sequence/phylo/nj.cpython-313-darwin.so +0 -0
  22. biotite/sequence/phylo/tree.cpython-313-darwin.so +0 -0
  23. biotite/sequence/phylo/upgma.cpython-313-darwin.so +0 -0
  24. biotite/structure/basepairs.py +13 -14
  25. biotite/structure/bonds.cpython-313-darwin.so +0 -0
  26. biotite/structure/box.py +140 -2
  27. biotite/structure/celllist.cpython-313-darwin.so +0 -0
  28. biotite/structure/celllist.pyx +0 -1
  29. biotite/structure/chains.py +15 -21
  30. biotite/structure/charges.cpython-313-darwin.so +0 -0
  31. biotite/structure/dotbracket.py +4 -4
  32. biotite/structure/graphics/rna.py +19 -16
  33. biotite/structure/hbond.py +1 -2
  34. biotite/structure/info/components.bcif +0 -0
  35. biotite/structure/io/pdb/convert.py +84 -2
  36. biotite/structure/io/pdb/file.py +79 -2
  37. biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so +0 -0
  38. biotite/structure/io/pdbx/compress.py +69 -32
  39. biotite/structure/io/pdbx/convert.py +207 -44
  40. biotite/structure/io/pdbx/encoding.cpython-313-darwin.so +0 -0
  41. biotite/structure/io/pdbx/encoding.pyx +39 -23
  42. biotite/structure/pseudoknots.py +6 -6
  43. biotite/structure/residues.py +10 -27
  44. biotite/structure/rings.py +1 -1
  45. biotite/structure/sasa.cpython-313-darwin.so +0 -0
  46. biotite/structure/sasa.pyx +28 -29
  47. biotite/structure/segments.py +55 -0
  48. biotite/structure/spacegroups.json +1567 -0
  49. biotite/structure/spacegroups.license +26 -0
  50. biotite/structure/superimpose.py +1 -191
  51. biotite/structure/transform.py +220 -1
  52. biotite/version.py +2 -2
  53. {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/METADATA +4 -34
  54. {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/RECORD +56 -54
  55. {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/WHEEL +3 -1
  56. {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/licenses/LICENSE.rst +0 -0
@@ -1,8 +1,4 @@
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- biotite-1.2.0.dist-info/RECORD,,
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- biotite-1.2.0.dist-info/WHEEL,sha256=yOvBCU9sSrzqnOtqZPKO_M2NJbMIdgkRdUvI1xBMjbo,105
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- biotite-1.2.0.dist-info/METADATA,sha256=mwg-xyNoWLydJEG7E-KM3V1J3LOto8ZVlu4SZpEp1VA,7318
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- biotite-1.2.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
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- biotite/version.py,sha256=V2bJXGFUmn_IdFy3HF4zr3V9woAW6i1X0GXwu8-ZCDs,511
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+ biotite/version.py,sha256=qDtcPZdKzxLpd8vVl6fpIFIMkWt2HK_cO9gLDwaHEdk,511
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  biotite/copyable.py,sha256=C7ycTQxqanxT0SmXhzy5OLp7NpZdNWHyokozdoVDGNA,1897
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  biotite/__init__.py,sha256=rL8ZyaCUjOrECEvRxyHj8MOMp4FHMJ8n6KKgrYf5OAQ,545
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  biotite/visualize.py,sha256=GSxIL8PLXMDlaULG-ckSghRifQnBnkseZ-OWsnuno4M,13955
@@ -30,20 +26,20 @@ biotite/database/rcsb/download.py,sha256=AtRljEV60NReeuWno-YFNrzrpFY_hetghO31-8V
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  biotite/database/rcsb/__init__.py,sha256=sTJnL4vYwhO7gSszMuT_Lr91uwX0wM1h-fZWiZkITYA,332
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  biotite/database/afdb/download.py,sha256=sIaGz0hTj1MBA_XIw9HCP6NGnPfNAyPgryOhLuRa9i8,6367
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- biotite/interface/version.py,sha256=B5SBAMUnERPZJKcOJAa02iEx01eH12q22OQ6PA6wDjQ,2364
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+ biotite/interface/version.py,sha256=1duxoIDwBB6onugS5QqrM1iyM_O644Dw0FGai0V9ssc,2952
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  biotite/interface/pymol/startup.py,sha256=8W0wIx13MGqGNvwTTT7ogmgypXCO48PI5w-DVPdS9jw,4619
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  biotite/interface/pymol/shapes.py,sha256=Q34C5H5PkH4XbnyymwbJYp9iFD2Idj2a_qzDRA8tohQ,6066
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  biotite/interface/pymol/object.py,sha256=5_zG4rn-sjreAHGdRLW45IxK9A096zXjgxn1cEgOVag,44193
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  biotite/interface/pymol/convert.py,sha256=ldLXSiFdwhEkoZkTtLFOMvymIh9oLniChve54SbHJLA,6044
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- biotite/interface/pymol/__init__.py,sha256=Rjp-b6GbSEKKHlHi38umHCZO1re11nnT3dMHbnVBLSc,6568
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+ biotite/interface/pymol/__init__.py,sha256=bOX95ek4eKSgZFYynrfcuZFRgjADYvhbrVWCR6ok7yc,6648
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  biotite/interface/pymol/display.py,sha256=KJfCM9-hzvFdC5KFxvG5-oEXd0MIaf3Ocr3dMQVoipY,8458
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  biotite/interface/pymol/cgo.py,sha256=wlG1GkbHAGYVdzaOUPQ5KzI-29lrDkutt0NRw7PIq-8,9859
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- biotite/interface/rdkit/__init__.py,sha256=9TJsZQl76H1pKsRpsciQE6afbBzQ_lTUd-pIduu6N8Q,451
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+ biotite/interface/rdkit/__init__.py,sha256=K2gVw_wrbIU0v-I3RgRvrihdtcpFfL9_t-IlObLuCMk,532
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  biotite/interface/rdkit/mol.py,sha256=T4Nnc3ttQFfy-4YbbSRLuTpcAhahWjqQGwM7fypouEs,19644
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  biotite/interface/openmm/system.py,sha256=V-SDc1YDa6nKHcREXz1cGAN7jZJ2X1cPf0gazz_Gv6s,7018
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- biotite/interface/openmm/__init__.py,sha256=PlstOsDTpt4LIxRkctD4hY9AKtImxXubNwCeP_YMWHY,505
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+ biotite/interface/openmm/__init__.py,sha256=ZcLsA9PPsrFDtY7rTMspizpCCQ_Fnm7vqwY-E5xTw6k,587
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  biotite/interface/openmm/state.py,sha256=jmdLw1xc7TQbgeOnZGgSgdmD_rR9VEnMqhX0Wnw_1Jo,2723
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  biotite/application/util.py,sha256=-d4D9-hxPoXPDzYC-xkWAPVg2U-KGZcs71T-Aelw23o,2503
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  biotite/application/localapp.py,sha256=kN34ncpN1XamVUONU80UWxZZke03XcYSsjdDAfpMCF8,10267
@@ -56,7 +52,7 @@ biotite/application/dssp/app.py,sha256=tHoG8uFmX8WaBHm0Fhjc7D0NXEaMa-zkLvwFzyP4F
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  biotite/application/viennarna/rnaalifold.py,sha256=QawXG9hYKQzdRt8-J_WiXUcoJx7Whps-iSCzq7DFJEA,10683
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  biotite/application/viennarna/util.py,sha256=racSlWGMtRRNtc_wh-ggIJWPDNoxIqwejc_Ztgusk8Q,2635
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  biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
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- biotite/application/viennarna/rnaplot.py,sha256=caKDQ4feNkCnFa7__MUAnY8JMmoS6-0PX_hl__u4oPY,6496
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+ biotite/application/viennarna/rnaplot.py,sha256=0cEPbZR4tvIbYJw1ekLV_7XJFzQUWqTo6Mi_tmWTvHU,6364
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  biotite/application/viennarna/rnafold.py,sha256=Tr6VfGLkzNhcGujND_k5XUb9uYAMsysnDWQ6oTcIamE,7910
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  biotite/application/sra/__init__.py,sha256=8I-uPkWUiu_ePPp56mI8MkwIOnjjQODpH0YMeOh8Leg,553
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  biotite/application/sra/app.py,sha256=qb1hRAXcR2xzzy0OeT5YaV-GLrzOnZDp3EZ6hllhQ80,15574
@@ -80,7 +76,7 @@ biotite/sequence/sequence.py,sha256=eIZ7Ugz9IwXlWXs_HC2NGyAtDDcP-Vf1z82jynT_PPE,
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  biotite/sequence/profile.py,sha256=f-KYMVtSB83O5J0Jy87Nzetd4axZDVsUcMSES2J7MJY,19249
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  biotite/sequence/__init__.py,sha256=fSWhobaPGRMJI6-8UYFpjguxVtP4O4cAHmiRxNAGzYI,3423
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- biotite/sequence/codec.cpython-313-darwin.so,sha256=k3JGcxODNRzF7_kGglTtwgEcZ16IOTdyrLcEFMu_kFc,283912
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+ biotite/sequence/codec.cpython-313-darwin.so,sha256=YJkibzx1uaP_KQEy0f8myiFhCpxLV7_Do8KaK1kDrb8,283912
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  biotite/sequence/search.py,sha256=G__T-GHMJODWmgh87z5wxs_g9-t1DtvEOd-USp-Qizg,3088
@@ -101,36 +97,36 @@ biotite/sequence/io/genbank/file.py,sha256=5XvuJCd_FuI2zh03_bLbLSAuORNw4tXr7p9sG
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- biotite/sequence/align/multiple.cpython-313-darwin.so,sha256=_VKeSXN5GDiYT6OqPnBkSzZG584E2yFf2gD_xEWcS0U,493360
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- biotite/sequence/align/permutation.cpython-313-darwin.so,sha256=uswNvEPrCLZwyoshBOBWdYVwCLVi5sQbcKKSJgsGG38,230512
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+ biotite/sequence/align/multiple.cpython-313-darwin.so,sha256=M6SQSad6huWxq4u27gHaP2guRdWcC32miKq2M5VJ-dE,493360
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+ biotite/sequence/align/permutation.cpython-313-darwin.so,sha256=77FKZC3pklFCevooGBghXSdVqoNNMQFbsJ97av3Pms0,230512
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- biotite/sequence/align/banded.cpython-313-darwin.so,sha256=Y6ACL5DRJd-malfRb_C6HMGIlFNQxc3OXWa8E0B-hOI,527184
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+ biotite/sequence/align/pairwise.pyx,sha256=Le9RWShVTDSUMpubq9-nxXSFNZp8CgYjhDsLUBE6yoY,22598
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+ biotite/sequence/align/localgapped.cpython-313-darwin.so,sha256=nKlbEHr_75fUfj-o1WN6k84XOQmJRa4pQntT_Fb3gic,1045216
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+ biotite/sequence/align/banded.cpython-313-darwin.so,sha256=xvILUhCCK4LZ5dhNG1R6BFoOQ5ubP5Kp1glxJBw4WFk,527184
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+ biotite/sequence/align/localungapped.cpython-313-darwin.so,sha256=5ndsLF-U3RXBFFIVdw7BBikUi0DA4TSPvqsfY2x_7Q8,303408
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+ biotite/sequence/align/kmertable.cpython-313-darwin.so,sha256=oZ9iSZzA1FaaLjqBAsgEVDlIWSjDx0oE8H6vHgKCw_k,683520
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+ biotite/structure/rings.py,sha256=DcrK7ujRN7op-HyY7yc7gsS_WaN-Z7TFqr3wqaNch6E,11446
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+ biotite/structure/pseudoknots.py,sha256=X3LrVSJuV1EGXuKMstkzrJQ86otbC_6-vX215fKygiU,22094
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+ biotite/structure/basepairs.py,sha256=BT3_LHmerkRfzuQSU86MVTvDs0QZ0UjNJpopJm5VXBI,49908
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+ biotite/structure/hbond.py,sha256=DhVGCm9s_nNHnHhvfNUl81ph77Y-SIeFY1GGf1kPeL4,15192
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+ biotite/structure/celllist.cpython-313-darwin.so,sha256=oNm4Ipy8DFJ_WfYP_r5ZdANRrVol91tDczOSJIKu_yU,319504
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+ biotite/structure/dotbracket.py,sha256=jl_Zqp0IINBwFPtZ0XK8rvmGmwebncbYpF26vJldIZY,7198
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+ biotite/structure/residues.py,sha256=Fbng2Pxib4dgkijP6zREguDYwm8L0RxbbJxpuU-cv0U,21834
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+ biotite/structure/spacegroups.json,sha256=SxP_900pi9iQruI_cgE1CTxl4k5kqOppv-nDyx64d3k,51558
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+ biotite/structure/celllist.pyx,sha256=vRYrg7F1NqWmFatFuVrxXKUnySzCNhM2uMyI2fASOq4,34563
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- biotite/structure/io/pdbx/encoding.cpython-313-darwin.so,sha256=zvFcJbU_XW1ZoDUazKg62Q7rZeTksD7V70zrRcZ17b8,1055456
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- biotite/structure/io/pdbx/encoding.pyx,sha256=ySywnGIvlDER4tcQzFMEgWkQJN_sMzB__MHbRQ0-wxc,31184
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+ biotite/structure/io/pdbx/convert.py,sha256=zGJsDmcbfB0xpigeTK0hyWsPANPnEv6eezxmg3Y2Bg8,79897
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+ biotite/structure/io/pdbx/encoding.cpython-313-darwin.so,sha256=8voFjKJ2NoODuDGY6k0FSo4eV0oP7xs4KLnoIa2Yk4w,1055520
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+ biotite/structure/io/pdbx/encoding.pyx,sha256=D8jUdfLXkXxFmut3Eu6V5ZUxQlBGgCS-eIWD0hasPxw,32128
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- biotite/structure/io/pdbx/compress.py,sha256=2ut2xFL34f2dcWoYkNMmBMlrDzkqnvygxYLHL9JvuVs,11800
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+ biotite/structure/io/pdbx/compress.py,sha256=v5QbZIgd22FrdbazaL7DFdLBvkICwMI5G3FaRKqNUdA,13310
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@@ -323,10 +321,10 @@ biotite/structure/io/mol/__init__.py,sha256=WvcNPDdf9W1zPyJ0tjTvGNxA83ht18uRQA8B
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- biotite/structure/io/pdb/convert.py,sha256=uiTLwWkXvc1VpGaHe-yRon4DpM0ZQh0ngEyU0whdvJU,10720
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- biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so,sha256=tPlSPmM0QMiOIOlXtsgurU96i88GuJdYbA_0tZgFYFQ,209344
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+ biotite/structure/io/pdb/convert.py,sha256=ECG8KFmduPN2xd7HWqJweYabn-IFdnhxVNtO3AkzLaQ,13800
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+ biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so,sha256=bWUW0DmOCfDgrvNv0ph77tFf-JPLNZDLFuaW_j2tw6k,209344
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- biotite/structure/io/pdb/file.py,sha256=27FCuvPzidmwf5tSRAtXfUTUbptKu-IHRvi-67Ld40E,50354
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+ biotite/structure/io/pdb/file.py,sha256=4N6E-iNhSvbZ98HmvcS-dI9qUCnwoZD4NqxrfwGMMx4,53635
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@@ -336,7 +334,7 @@ biotite/structure/alphabet/encoder.py,sha256=2BWLMdGBr2bHw09vMhbzPztMKSnVt8UhUf8
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- biotite/structure/info/components.bcif,sha256=ClKq5vYpizeAB7JSaz-ZnZ_rby7mVVn3MS5bv8muoqU,59077222
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+ biotite/structure/info/components.bcif,sha256=ouff7fpRp47Fq6CYsKBZlLpHkaN6x6X6q-dVnRs7uro,59990720
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@@ -348,5 +346,9 @@ biotite/structure/info/masses.py,sha256=HOdaeFZkd5LSrl00025S1MwXT7im8V-s0bU54tr1
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- biotite/structure/graphics/rna.py,sha256=w7zFMKo2ZZ4n60SkbkupEXPxe3-KUNa261PF784ry8k,12016
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+ biotite/structure/graphics/rna.py,sha256=1fa-_ROxHIdCQu4nFEmDWqWnQlXA6iZDZDprKST_h_g,11842
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  biotite/structure/graphics/atoms.py,sha256=988_URX4hfTE3oBOYgAvZruOrzogMPcFKiTT5RJL01E,8116
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+ biotite-1.3.0.dist-info/RECORD,,
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+ biotite-1.3.0.dist-info/WHEEL,sha256=s0cTlxH34_QlWnER2EjFUsHTyO2KntcvTrX9yBtBmNo,133
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+ biotite-1.3.0.dist-info/METADATA,sha256=gcnHDjnEHlvw3vQKLx2ZpW64zoh-snCRfNU0n0erVEw,5525
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+ biotite-1.3.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
@@ -1,4 +1,6 @@
1
1
  Wheel-Version: 1.0
2
- Generator: hatchling 1.25.0
2
+ Generator: hatchling 1.27.0
3
3
  Root-Is-Purelib: false
4
4
  Tag: cp313-cp313-macosx_11_0_arm64
5
+ Generator: delocate 0.13.0
6
+