biotite 1.2.0__cp312-cp312-macosx_11_0_arm64.whl → 1.3.0__cp312-cp312-macosx_11_0_arm64.whl
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- biotite/application/viennarna/rnaplot.py +7 -7
- biotite/interface/openmm/__init__.py +4 -0
- biotite/interface/pymol/__init__.py +3 -0
- biotite/interface/rdkit/__init__.py +4 -0
- biotite/interface/version.py +23 -0
- biotite/sequence/align/banded.cpython-312-darwin.so +0 -0
- biotite/sequence/align/banded.pyx +1 -1
- biotite/sequence/align/kmeralphabet.cpython-312-darwin.so +0 -0
- biotite/sequence/align/kmersimilarity.cpython-312-darwin.so +0 -0
- biotite/sequence/align/kmertable.cpython-312-darwin.so +0 -0
- biotite/sequence/align/localgapped.cpython-312-darwin.so +0 -0
- biotite/sequence/align/localungapped.cpython-312-darwin.so +0 -0
- biotite/sequence/align/multiple.cpython-312-darwin.so +0 -0
- biotite/sequence/align/multiple.pyx +1 -2
- biotite/sequence/align/pairwise.cpython-312-darwin.so +0 -0
- biotite/sequence/align/pairwise.pyx +2 -4
- biotite/sequence/align/permutation.cpython-312-darwin.so +0 -0
- biotite/sequence/align/selector.cpython-312-darwin.so +0 -0
- biotite/sequence/align/tracetable.cpython-312-darwin.so +0 -0
- biotite/sequence/codec.cpython-312-darwin.so +0 -0
- biotite/sequence/phylo/nj.cpython-312-darwin.so +0 -0
- biotite/sequence/phylo/tree.cpython-312-darwin.so +0 -0
- biotite/sequence/phylo/upgma.cpython-312-darwin.so +0 -0
- biotite/structure/basepairs.py +13 -14
- biotite/structure/bonds.cpython-312-darwin.so +0 -0
- biotite/structure/box.py +140 -2
- biotite/structure/celllist.cpython-312-darwin.so +0 -0
- biotite/structure/celllist.pyx +0 -1
- biotite/structure/chains.py +15 -21
- biotite/structure/charges.cpython-312-darwin.so +0 -0
- biotite/structure/dotbracket.py +4 -4
- biotite/structure/graphics/rna.py +19 -16
- biotite/structure/hbond.py +1 -2
- biotite/structure/info/components.bcif +0 -0
- biotite/structure/io/pdb/convert.py +84 -2
- biotite/structure/io/pdb/file.py +79 -2
- biotite/structure/io/pdb/hybrid36.cpython-312-darwin.so +0 -0
- biotite/structure/io/pdbx/compress.py +69 -32
- biotite/structure/io/pdbx/convert.py +207 -44
- biotite/structure/io/pdbx/encoding.cpython-312-darwin.so +0 -0
- biotite/structure/io/pdbx/encoding.pyx +39 -23
- biotite/structure/pseudoknots.py +6 -6
- biotite/structure/residues.py +10 -27
- biotite/structure/rings.py +1 -1
- biotite/structure/sasa.cpython-312-darwin.so +0 -0
- biotite/structure/sasa.pyx +28 -29
- biotite/structure/segments.py +55 -0
- biotite/structure/spacegroups.json +1567 -0
- biotite/structure/spacegroups.license +26 -0
- biotite/structure/superimpose.py +1 -191
- biotite/structure/transform.py +220 -1
- biotite/version.py +2 -2
- {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/METADATA +4 -34
- {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/RECORD +56 -54
- {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/WHEEL +3 -1
- {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/licenses/LICENSE.rst +0 -0
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