biotite 1.2.0__cp311-cp311-macosx_11_0_arm64.whl → 1.3.0__cp311-cp311-macosx_11_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of biotite might be problematic. Click here for more details.

Files changed (56) hide show
  1. biotite/application/viennarna/rnaplot.py +7 -7
  2. biotite/interface/openmm/__init__.py +4 -0
  3. biotite/interface/pymol/__init__.py +3 -0
  4. biotite/interface/rdkit/__init__.py +4 -0
  5. biotite/interface/version.py +23 -0
  6. biotite/sequence/align/banded.cpython-311-darwin.so +0 -0
  7. biotite/sequence/align/banded.pyx +1 -1
  8. biotite/sequence/align/kmeralphabet.cpython-311-darwin.so +0 -0
  9. biotite/sequence/align/kmersimilarity.cpython-311-darwin.so +0 -0
  10. biotite/sequence/align/kmertable.cpython-311-darwin.so +0 -0
  11. biotite/sequence/align/localgapped.cpython-311-darwin.so +0 -0
  12. biotite/sequence/align/localungapped.cpython-311-darwin.so +0 -0
  13. biotite/sequence/align/multiple.cpython-311-darwin.so +0 -0
  14. biotite/sequence/align/multiple.pyx +1 -2
  15. biotite/sequence/align/pairwise.cpython-311-darwin.so +0 -0
  16. biotite/sequence/align/pairwise.pyx +2 -4
  17. biotite/sequence/align/permutation.cpython-311-darwin.so +0 -0
  18. biotite/sequence/align/selector.cpython-311-darwin.so +0 -0
  19. biotite/sequence/align/tracetable.cpython-311-darwin.so +0 -0
  20. biotite/sequence/codec.cpython-311-darwin.so +0 -0
  21. biotite/sequence/phylo/nj.cpython-311-darwin.so +0 -0
  22. biotite/sequence/phylo/tree.cpython-311-darwin.so +0 -0
  23. biotite/sequence/phylo/upgma.cpython-311-darwin.so +0 -0
  24. biotite/structure/basepairs.py +13 -14
  25. biotite/structure/bonds.cpython-311-darwin.so +0 -0
  26. biotite/structure/box.py +140 -2
  27. biotite/structure/celllist.cpython-311-darwin.so +0 -0
  28. biotite/structure/celllist.pyx +0 -1
  29. biotite/structure/chains.py +15 -21
  30. biotite/structure/charges.cpython-311-darwin.so +0 -0
  31. biotite/structure/dotbracket.py +4 -4
  32. biotite/structure/graphics/rna.py +19 -16
  33. biotite/structure/hbond.py +1 -2
  34. biotite/structure/info/components.bcif +0 -0
  35. biotite/structure/io/pdb/convert.py +84 -2
  36. biotite/structure/io/pdb/file.py +79 -2
  37. biotite/structure/io/pdb/hybrid36.cpython-311-darwin.so +0 -0
  38. biotite/structure/io/pdbx/compress.py +69 -32
  39. biotite/structure/io/pdbx/convert.py +207 -44
  40. biotite/structure/io/pdbx/encoding.cpython-311-darwin.so +0 -0
  41. biotite/structure/io/pdbx/encoding.pyx +39 -23
  42. biotite/structure/pseudoknots.py +6 -6
  43. biotite/structure/residues.py +10 -27
  44. biotite/structure/rings.py +1 -1
  45. biotite/structure/sasa.cpython-311-darwin.so +0 -0
  46. biotite/structure/sasa.pyx +28 -29
  47. biotite/structure/segments.py +55 -0
  48. biotite/structure/spacegroups.json +1567 -0
  49. biotite/structure/spacegroups.license +26 -0
  50. biotite/structure/superimpose.py +1 -191
  51. biotite/structure/transform.py +220 -1
  52. biotite/version.py +2 -2
  53. {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/METADATA +4 -34
  54. {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/RECORD +56 -54
  55. {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/WHEEL +3 -1
  56. {biotite-1.2.0.dist-info → biotite-1.3.0.dist-info}/licenses/LICENSE.rst +0 -0
@@ -1,8 +1,4 @@
1
- biotite-1.2.0.dist-info/RECORD,,
2
- biotite-1.2.0.dist-info/WHEEL,sha256=FADWsAbCknuFYRiPIqUqs7TwHvSgFIOpRdMEMMJW_gY,105
3
- biotite-1.2.0.dist-info/METADATA,sha256=mwg-xyNoWLydJEG7E-KM3V1J3LOto8ZVlu4SZpEp1VA,7318
4
- biotite-1.2.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
5
- biotite/version.py,sha256=V2bJXGFUmn_IdFy3HF4zr3V9woAW6i1X0GXwu8-ZCDs,511
1
+ biotite/version.py,sha256=qDtcPZdKzxLpd8vVl6fpIFIMkWt2HK_cO9gLDwaHEdk,511
6
2
  biotite/copyable.py,sha256=C7ycTQxqanxT0SmXhzy5OLp7NpZdNWHyokozdoVDGNA,1897
7
3
  biotite/__init__.py,sha256=rL8ZyaCUjOrECEvRxyHj8MOMp4FHMJ8n6KKgrYf5OAQ,545
8
4
  biotite/visualize.py,sha256=GSxIL8PLXMDlaULG-ckSghRifQnBnkseZ-OWsnuno4M,13955
@@ -30,20 +26,20 @@ biotite/database/rcsb/download.py,sha256=AtRljEV60NReeuWno-YFNrzrpFY_hetghO31-8V
30
26
  biotite/database/rcsb/__init__.py,sha256=sTJnL4vYwhO7gSszMuT_Lr91uwX0wM1h-fZWiZkITYA,332
31
27
  biotite/database/afdb/download.py,sha256=sIaGz0hTj1MBA_XIw9HCP6NGnPfNAyPgryOhLuRa9i8,6367
32
28
  biotite/database/afdb/__init__.py,sha256=VqRn4WE6wJWS4Sd916xchmMz7tyPpEflnwOVnInhEOs,333
33
- biotite/interface/version.py,sha256=B5SBAMUnERPZJKcOJAa02iEx01eH12q22OQ6PA6wDjQ,2364
29
+ biotite/interface/version.py,sha256=1duxoIDwBB6onugS5QqrM1iyM_O644Dw0FGai0V9ssc,2952
34
30
  biotite/interface/__init__.py,sha256=CEbr_8h6pt3za2ybSeePcNKMsA2vkNUbzYhzP62g2Lg,717
35
31
  biotite/interface/warning.py,sha256=rU1F-b1MeIj1OWaK6wMeuM_YE-WKNGqo2TehjTr10KM,577
36
32
  biotite/interface/pymol/startup.py,sha256=8W0wIx13MGqGNvwTTT7ogmgypXCO48PI5w-DVPdS9jw,4619
37
33
  biotite/interface/pymol/shapes.py,sha256=Q34C5H5PkH4XbnyymwbJYp9iFD2Idj2a_qzDRA8tohQ,6066
38
34
  biotite/interface/pymol/object.py,sha256=5_zG4rn-sjreAHGdRLW45IxK9A096zXjgxn1cEgOVag,44193
39
35
  biotite/interface/pymol/convert.py,sha256=ldLXSiFdwhEkoZkTtLFOMvymIh9oLniChve54SbHJLA,6044
40
- biotite/interface/pymol/__init__.py,sha256=Rjp-b6GbSEKKHlHi38umHCZO1re11nnT3dMHbnVBLSc,6568
36
+ biotite/interface/pymol/__init__.py,sha256=bOX95ek4eKSgZFYynrfcuZFRgjADYvhbrVWCR6ok7yc,6648
41
37
  biotite/interface/pymol/display.py,sha256=KJfCM9-hzvFdC5KFxvG5-oEXd0MIaf3Ocr3dMQVoipY,8458
42
38
  biotite/interface/pymol/cgo.py,sha256=wlG1GkbHAGYVdzaOUPQ5KzI-29lrDkutt0NRw7PIq-8,9859
43
- biotite/interface/rdkit/__init__.py,sha256=9TJsZQl76H1pKsRpsciQE6afbBzQ_lTUd-pIduu6N8Q,451
39
+ biotite/interface/rdkit/__init__.py,sha256=K2gVw_wrbIU0v-I3RgRvrihdtcpFfL9_t-IlObLuCMk,532
44
40
  biotite/interface/rdkit/mol.py,sha256=T4Nnc3ttQFfy-4YbbSRLuTpcAhahWjqQGwM7fypouEs,19644
45
41
  biotite/interface/openmm/system.py,sha256=V-SDc1YDa6nKHcREXz1cGAN7jZJ2X1cPf0gazz_Gv6s,7018
46
- biotite/interface/openmm/__init__.py,sha256=PlstOsDTpt4LIxRkctD4hY9AKtImxXubNwCeP_YMWHY,505
42
+ biotite/interface/openmm/__init__.py,sha256=ZcLsA9PPsrFDtY7rTMspizpCCQ_Fnm7vqwY-E5xTw6k,587
47
43
  biotite/interface/openmm/state.py,sha256=jmdLw1xc7TQbgeOnZGgSgdmD_rR9VEnMqhX0Wnw_1Jo,2723
48
44
  biotite/application/util.py,sha256=-d4D9-hxPoXPDzYC-xkWAPVg2U-KGZcs71T-Aelw23o,2503
49
45
  biotite/application/localapp.py,sha256=kN34ncpN1XamVUONU80UWxZZke03XcYSsjdDAfpMCF8,10267
@@ -56,7 +52,7 @@ biotite/application/dssp/app.py,sha256=tHoG8uFmX8WaBHm0Fhjc7D0NXEaMa-zkLvwFzyP4F
56
52
  biotite/application/viennarna/rnaalifold.py,sha256=QawXG9hYKQzdRt8-J_WiXUcoJx7Whps-iSCzq7DFJEA,10683
57
53
  biotite/application/viennarna/util.py,sha256=racSlWGMtRRNtc_wh-ggIJWPDNoxIqwejc_Ztgusk8Q,2635
58
54
  biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
59
- biotite/application/viennarna/rnaplot.py,sha256=caKDQ4feNkCnFa7__MUAnY8JMmoS6-0PX_hl__u4oPY,6496
55
+ biotite/application/viennarna/rnaplot.py,sha256=0cEPbZR4tvIbYJw1ekLV_7XJFzQUWqTo6Mi_tmWTvHU,6364
60
56
  biotite/application/viennarna/rnafold.py,sha256=Tr6VfGLkzNhcGujND_k5XUb9uYAMsysnDWQ6oTcIamE,7910
61
57
  biotite/application/sra/__init__.py,sha256=8I-uPkWUiu_ePPp56mI8MkwIOnjjQODpH0YMeOh8Leg,553
62
58
  biotite/application/sra/app.py,sha256=qb1hRAXcR2xzzy0OeT5YaV-GLrzOnZDp3EZ6hllhQ80,15574
@@ -74,7 +70,7 @@ biotite/application/clustalo/app.py,sha256=f5NEOkKCiTDlIVNJ1ozefzixwndVC4_vPQq8a
74
70
  biotite/application/muscle/app3.py,sha256=Otgzi3VEYv0iQ_q5TesRJEfB6krbF7wXxfN87JzdKFg,7653
75
71
  biotite/application/muscle/__init__.py,sha256=B1JrhQYjgwSKWxpcYgXS91f2GM5Tc1i9Ocs2wElslRs,338
76
72
  biotite/application/muscle/app5.py,sha256=xYF-iLn-UVue-vu4yGJFaQVtnPi561rwoIVwVCIu_C8,4474
77
- biotite/sequence/codec.cpython-311-darwin.so,sha256=DcMINv0s-6kGdyi7BKr9m2EO5eYG5U-WRKRUFtXd1ts,285816
73
+ biotite/sequence/codec.cpython-311-darwin.so,sha256=_KQ5OPMg6H6FhDGtut5lvt9g734ZKpY9cZiWf21_eIg,285816
78
74
  biotite/sequence/annotation.py,sha256=L_TZL2Gmsuokbr6A6Y6gVa4hbEM3ox_NJ_P5PTsZ4V0,29705
79
75
  biotite/sequence/codec.pyx,sha256=ed415FTMBJfiI9WbgKRFO3tF1f_SpRHxyEafLxW-g1k,4962
80
76
  biotite/sequence/sequence.py,sha256=eIZ7Ugz9IwXlWXs_HC2NGyAtDDcP-Vf1z82jynT_PPE,11691
@@ -101,36 +97,36 @@ biotite/sequence/io/genbank/file.py,sha256=5XvuJCd_FuI2zh03_bLbLSAuORNw4tXr7p9sG
101
97
  biotite/sequence/io/fastq/convert.py,sha256=x4rWn7WHdKxW1u7mwDgM8Z3qaML4lAO7r-JiMTQbvaI,3632
102
98
  biotite/sequence/io/fastq/__init__.py,sha256=lhw9bxWS0eKPXzF1lg8fvrNmgAmJPLBzIB6jEP5GOVI,588
103
99
  biotite/sequence/io/fastq/file.py,sha256=Q5jrBN21Fi0hp6rU5cc68kQPYc1jWdZfMwhx0Ze6oGw,17817
104
- biotite/sequence/align/selector.cpython-311-darwin.so,sha256=iYcNGffmzF5QI0qCAePGVI22R3LZsK6paqZ0__V5KUk,331120
100
+ biotite/sequence/align/selector.cpython-311-darwin.so,sha256=ekqt9Kb9HTP2ekyGL6KAobhL1S43Kr-x7IQS_HQUMDg,331120
105
101
  biotite/sequence/align/matrix.py,sha256=A1PUA43ltUnvYqB_RO6WPbvAtCzZI3zSfeKHP3aVSNQ,22360
106
102
  biotite/sequence/align/permutation.pyx,sha256=xbbw5DJ7c5SXnuSUl2hJUMxzvinKP1Khc7CSdH5cEE0,10028
107
103
  biotite/sequence/align/selector.pyx,sha256=BstkOkz-nB2dPtkZIZbU5QlCT-h3QHxdsGg1pGUh-Qo,33471
108
- biotite/sequence/align/kmeralphabet.cpython-311-darwin.so,sha256=k_udT_RWQ0eWq-gM6ntyYBqz2_inyqsW9pAmI61O_Qg,420032
104
+ biotite/sequence/align/kmeralphabet.cpython-311-darwin.so,sha256=XRoFxsGF5cKBsU_avXcvDIUd3fqAgdLu5WfuMY2R2dE,420032
109
105
  biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
110
106
  biotite/sequence/align/kmeralphabet.pyx,sha256=t4MKs3uIXGn_2AB8NRKQxY73RoBLDa-IlKVnSdANkCU,18636
111
- biotite/sequence/align/kmertable.cpython-311-darwin.so,sha256=gLNX9XrRUuT4mDyoPqVNqc1VOd7qjYsN0BpxP8BPZDA,728560
107
+ biotite/sequence/align/kmertable.cpython-311-darwin.so,sha256=pBg3Xmr2rbriKK98R_W0xy1aaNtLUKlF4mQ4utAbRH0,728560
112
108
  biotite/sequence/align/alignment.py,sha256=vf6Ldh0nevFkQ3dHJJRZw6_ZsqoWHHv-6M1Hy_DQgEs,22380
113
- biotite/sequence/align/kmersimilarity.cpython-311-darwin.so,sha256=GKMmd2iETv8yP28JNI3Ycv08UR76rtrZZ2Es22jnIqY,232440
109
+ biotite/sequence/align/kmersimilarity.cpython-311-darwin.so,sha256=XZIf5x1WRgXLtwsZdGWPwgPQ13xbg8CTqv125AUpVW8,232440
114
110
  biotite/sequence/align/tracetable.pyx,sha256=1gsT3OV7VkE6i_UpNiYOLVvD2_tfJgbNZb1yv9F4XR8,15455
115
- biotite/sequence/align/pairwise.pyx,sha256=atF365cD9AV6StIJRhFqvg12i9mmEHf1KvJJf0gTaqo,22680
111
+ biotite/sequence/align/pairwise.pyx,sha256=Le9RWShVTDSUMpubq9-nxXSFNZp8CgYjhDsLUBE6yoY,22598
116
112
  biotite/sequence/align/__init__.py,sha256=NyYyB9PmYWCBQB_MaI-L54vYR64JraUvP9uobGJN54w,4711
117
- biotite/sequence/align/tracetable.cpython-311-darwin.so,sha256=X81FLT4jPOo6MBvV1qsEcXkhQjjaDGFfK8rsUqDpTSM,204496
113
+ biotite/sequence/align/tracetable.cpython-311-darwin.so,sha256=H27GffGcIPGyY5nMGg-bhu8dgbstvjZoGBUAjOhjzME,204496
118
114
  biotite/sequence/align/localungapped.pyx,sha256=h9wgrY85_t0_wOGDW56uJ9N4bo7GciYpeJZpNIBlp4g,9660
119
115
  biotite/sequence/align/buckets.py,sha256=k8H5RBS5Y7DrMoIOd5Ifrxp-nYWosJuqOYgLd1y-DWs,2464
120
- biotite/sequence/align/multiple.cpython-311-darwin.so,sha256=T7iYlL_vIYWeoWjWHlZi9r5XlkwL9ADlmVQVNbSvFJs,503104
116
+ biotite/sequence/align/multiple.cpython-311-darwin.so,sha256=evOomWmsjPv9l2tDzcxdBd3mY_DT0AoBhYneijQSZ0Q,503104
121
117
  biotite/sequence/align/localgapped.pyx,sha256=1uoooliEMravtH1fQJSth0a6FEM4La_v32wGP2C0RIQ,33106
122
- biotite/sequence/align/permutation.cpython-311-darwin.so,sha256=1CVY7GCXyVVS9VJo_ES1sTD6h3TDLjluwXfq5Ul4Pc0,236400
118
+ biotite/sequence/align/permutation.cpython-311-darwin.so,sha256=1_AEYXjMfD-u7lboQvfKfRLcJqKJHyw9qB-eSOCsJ54,236400
123
119
  biotite/sequence/align/cigar.py,sha256=ZhxnWSURuKMwOshbeNIK8mtt6r-xcFWXLzoLtluEo88,14335
124
120
  biotite/sequence/align/tracetable.pxd,sha256=_VP1ayP6FZL1Tzn1pCCbt6xPZDzFtE9bH0Gvop2lxyQ,2825
125
121
  biotite/sequence/align/kmertable.pyx,sha256=EqLVngPURKux5tsrv5PauuN5hLKAJbDDVZWnVGWZufo,121697
126
- biotite/sequence/align/multiple.pyx,sha256=cUnbuAfYBp_Kt4Y7LeuPeuBiRdyu1D694i1kQIsUqPM,21965
122
+ biotite/sequence/align/multiple.pyx,sha256=ny6BbmXApxQAYMrUT7MPXqfFiEfrhfxvQApiSPoZ7iQ,21924
127
123
  biotite/sequence/align/statistics.py,sha256=mtscAgqIZIdTjtsvjg4s2A6gzFex0QxyHxmcAxpBQww,9652
128
- biotite/sequence/align/banded.pyx,sha256=DT9XvnQJ16uEgc2op5e3VgsjdtNmhXP01YqbapST_7A,25300
129
- biotite/sequence/align/pairwise.cpython-311-darwin.so,sha256=ocE3-uvPc8T7COYyhHaD0uoZ5WITsXX3DhCJId7I8-w,578352
130
- biotite/sequence/align/banded.cpython-311-darwin.so,sha256=RNLna-NyHUvK46lH7TOfQAB4n6sIwSKfI_HnpqVgtns,524784
124
+ biotite/sequence/align/banded.pyx,sha256=n9-nBkEryjaA-_rQxjT90ZHKIh7Ep1cjFPjWPlHUC9I,25283
125
+ biotite/sequence/align/pairwise.cpython-311-darwin.so,sha256=4UD-oyXu9KxWm-XAuB6KFpeqZphuGI1NMMcoESk7v7M,561840
126
+ biotite/sequence/align/banded.cpython-311-darwin.so,sha256=z9HdFLT5Wkr80FpObSWHRK8HjvS0xiHfaHAWTSnmIlw,524784
131
127
  biotite/sequence/align/kmersimilarity.pyx,sha256=EBpz8R_fofRd4gsmBJLuH2qZgMWKlzQkCJ54w_-K7gQ,8433
132
- biotite/sequence/align/localgapped.cpython-311-darwin.so,sha256=0MPsYgtIvmjAHCUTE71CI3oXYGCIDEjKeAOW8uCs7gg,1184768
133
- biotite/sequence/align/localungapped.cpython-311-darwin.so,sha256=sdCH4cbWm8lrbJqMohZ1hjwKPCtAfR41_ftBVlID-iI,306320
128
+ biotite/sequence/align/localgapped.cpython-311-darwin.so,sha256=d_Fg2sJTwBQ5Yvn8kVGz0SRaQQ7I24gvEddptzxWukg,1184768
129
+ biotite/sequence/align/localungapped.cpython-311-darwin.so,sha256=msaoxkvrJCCdwT41zGu_8f7PGC9kI0fvrO6mdRBSzLs,306320
134
130
  biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
135
131
  biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
136
132
  biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
@@ -251,47 +247,49 @@ biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9
251
247
  biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
252
248
  biotite/sequence/graphics/color_schemes/3di_flower.json,sha256=wuo5hCVuc_wR9a5AviU9BXRQC8XUb90VqJCsKcpq8pc,917
253
249
  biotite/sequence/phylo/nj.pyx,sha256=s6hoo_7s3VFy-7Hgq9lKtUVXTZ-To8Dxwytk-ohfWYI,7281
254
- biotite/sequence/phylo/nj.cpython-311-darwin.so,sha256=AFpBFat50sq-SC5nyE2qyEICEChUiH04mx4Z5dPllgg,232584
250
+ biotite/sequence/phylo/nj.cpython-311-darwin.so,sha256=nN1m-sS5Iw5PBvffaYCRTTQHXe57bjWdMbm6x45U6qM,232584
255
251
  biotite/sequence/phylo/__init__.py,sha256=TW1CQqOa3JZYqidRy5XE8gA0HuzA8zo2Iouit3wSsBM,1261
256
252
  biotite/sequence/phylo/upgma.pyx,sha256=86QxGjj8fcGRhze7vZfqw8JLjLAZUevhkWDmzTy357E,5213
257
253
  biotite/sequence/phylo/tree.pyx,sha256=4e4Bhlm1qWY0Wvj6JqDE9jVwP6lEUmE8lIHEUmRNLwU,39206
258
- biotite/sequence/phylo/tree.cpython-311-darwin.so,sha256=P-FFb1KNWJgs5rAOL-ik6wF9x71BXojjA2QZOwjYpsU,287832
259
- biotite/sequence/phylo/upgma.cpython-311-darwin.so,sha256=Yzo2CAm33bO9fikFQyB_vnP0xLmRqteqbPhAPN0k7JA,212680
254
+ biotite/sequence/phylo/tree.cpython-311-darwin.so,sha256=m2lBdUJqLko7IGdD2JZ53ZPyBuJN4FbU_9-u_RHUiL0,287832
255
+ biotite/sequence/phylo/upgma.cpython-311-darwin.so,sha256=qil3OHqFIyMV1Xwgf8ZYUyaZdQDsMe46cIE9yvPr-tY,212680
260
256
  biotite/structure/repair.py,sha256=EUvsV7EkJt-j7ruOnhZxhqdxfl7FMSKVzuQr7_xJE5g,6996
261
- biotite/structure/superimpose.py,sha256=QiTG4N6g_Dov2PrNeXTb-MrqYkr-Th3GIFOJh-DzS5Y,25897
262
- biotite/structure/sasa.cpython-311-darwin.so,sha256=g3hjL5SVxikIw5b78F8S7jsC7yzl7-MNNwEUfa5hXHs,272408
263
- biotite/structure/chains.py,sha256=jvyZD9L55zwlnjpo_vBYFMtgQ1xSZnWxTpw3UApnbw4,8484
264
- biotite/structure/box.py,sha256=n2x4AhNzrXMUn_kT8mKd1rr3_1aFlQdGi9GeGhwGaB0,18750
257
+ biotite/structure/superimpose.py,sha256=gdn6be9KOf24qphK3mFRkxFDK4ejrtTm8C_tcpzSFHs,19562
258
+ biotite/structure/sasa.cpython-311-darwin.so,sha256=JX9jdBIpPavxSSMJZ5W0b1iLYmhoRCeWEORcdD-K3WM,272408
259
+ biotite/structure/chains.py,sha256=_E4oEhXRg2AxsyZVy623fRkylzAFonDTDSLGSbh3-M8,8324
260
+ biotite/structure/box.py,sha256=tcnKSV_6UWtzOqEo-ILyIHlt_09gyOMtO0JN2vxlS9o,23388
265
261
  biotite/structure/error.py,sha256=NI8oZfhO7oYWlcEIi025QZFD3Wjvwn6SvOn_RanrFT0,783
262
+ biotite/structure/spacegroups.license,sha256=v4W5iaPxCZa2djh8J_KaHZCPX254AQjYjqaMIXI1wPI,1297
266
263
  biotite/structure/util.py,sha256=PvmoUJbB_PpqnTX0osuAs6e5V8AmeKjAVy3mFFZH288,4959
267
- biotite/structure/segments.py,sha256=_uiFncD6qeyZeJc_8NLUPXRDazwv66jfpdGw_EkO0WU,7596
264
+ biotite/structure/segments.py,sha256=1Z094xZWFsLTx_d5w67I-oHlEPCj2sbtLvZWaZfbgF4,9741
268
265
  biotite/structure/sequence.py,sha256=TlJiSH1AC9XETl3G24UkKl1FHfpWh1aPKsdxj4ZdiEs,4245
269
- biotite/structure/sasa.pyx,sha256=z6D7JOR70-moE3nNcJ1-EWsjORbicMB7Zvpacs512Ec,13110
266
+ biotite/structure/sasa.pyx,sha256=lditLNluxg3LsxV1o3B69QOK0Lu1zeuRJXrEQ2SVIKk,12918
270
267
  biotite/structure/tm.py,sha256=HtG56CZI9fk3zjML5f5XJXcE7oKVtYS1r-HGm2ugawo,20967
271
- biotite/structure/celllist.cpython-311-darwin.so,sha256=3AyjGNnS7aOwpQxFYNWCLyDpDm8O6L8Dqh8uh3ZPKfc,334144
268
+ biotite/structure/celllist.cpython-311-darwin.so,sha256=C0yhpigiIW3PAK-tcNjJkepZieEAe7l3EY9EzemrKjE,334144
272
269
  biotite/structure/__init__.py,sha256=dqOp3qC1UU3AP7cxNus2wmtHLB9vB_D17Lhmd9cRxAM,5488
273
270
  biotite/structure/mechanics.py,sha256=A7590nMLbsfp_pHvLukca_YV0Q6VcrfDRW_p58D8ZNY,2587
274
271
  biotite/structure/sse.py,sha256=OHXohnYi4ipBcSas9XTi9Pm8oNasM49Oxr7DBvYbe1U,11404
275
- biotite/structure/bonds.cpython-311-darwin.so,sha256=83fjYDmtq0B6wcdbSJMQrEwJdblUcw24YVQAbP96pGg,594904
272
+ biotite/structure/bonds.cpython-311-darwin.so,sha256=HtkGadaHQTQlJ13z_LfumsCOsp5b4oV9U9Q5wZIPmD8,594904
276
273
  biotite/structure/charges.pyx,sha256=RpCz4sVOiwmZeVTcMAapiWJFVBPAK0gAAiNoNZuxZWA,18822
277
274
  biotite/structure/density.py,sha256=wGZFgqkK6Kdv0OzmmWz8eXPEVxPSFShxINWOOdehaIg,4197
278
275
  biotite/structure/rdf.py,sha256=Yf9PoWqSpNK3QsWqnCnOUBGL8WwKGOakgZ0pxj5UOiA,8104
279
- biotite/structure/transform.py,sha256=lOXSdDhJSgMvU1Rs3yNztEOZ3ph-ntb5O2lkmck6DKc,19683
276
+ biotite/structure/transform.py,sha256=i8xwMKfpHlN4hHFZBm7-U_nP5bLx_n1WgX8BQZ541_k,26975
280
277
  biotite/structure/geometry.py,sha256=7FtPNJtTUn691xw6kbVk90s8a9rAd98zC-rKD23ikdU,23676
281
278
  biotite/structure/molecules.py,sha256=Ar4NF3r3VQwirFprTMItIdHeluMSlpKOpRanZ0EEsWI,15291
282
279
  biotite/structure/filter.py,sha256=cXeTVhK2lbbHq9KA-lvu2-TKENtHWoI1Qc2hpFxR71Q,17995
283
280
  biotite/structure/bonds.pyx,sha256=xho8dzXn40-1Qt0vbikeZsqYTNWfV4WOd17p_UbU6Ow,69759
284
- biotite/structure/rings.py,sha256=elgOyclErHer-LXeWjE-xVcV12FHVnZeBFw1ixiz_ns,11446
281
+ biotite/structure/rings.py,sha256=DcrK7ujRN7op-HyY7yc7gsS_WaN-Z7TFqr3wqaNch6E,11446
285
282
  biotite/structure/atoms.py,sha256=aavGBW5xIQlzpX_dgY-1jD7Z4LRIuSLRZBhMiZt6iq0,50844
286
- biotite/structure/charges.cpython-311-darwin.so,sha256=iOFJUQYEhHHFw8f5kx4Yfv_uiIy0VPQhpxTpOJnVq4E,276592
287
- biotite/structure/pseudoknots.py,sha256=yuVUH1YWgrAVHMPsDI3h-4Z0MgnQLWHikqqaDkf57U4,22167
288
- biotite/structure/basepairs.py,sha256=cS0G7iiCbgnqLs2smZjqsS_Ffw2H7cvHiz57T4MfVos,50013
283
+ biotite/structure/charges.cpython-311-darwin.so,sha256=sMrtN-37rUMRWrTKXN576gpHFXOtDZ-lAKEUejcS6NQ,276592
284
+ biotite/structure/pseudoknots.py,sha256=X3LrVSJuV1EGXuKMstkzrJQ86otbC_6-vX215fKygiU,22094
285
+ biotite/structure/basepairs.py,sha256=BT3_LHmerkRfzuQSU86MVTvDs0QZ0UjNJpopJm5VXBI,49908
289
286
  biotite/structure/integrity.py,sha256=-HaFg2ckyVgSyHEyHqqNQ8fOwnhVzieYsMgyTCdzCFo,6763
290
287
  biotite/structure/compare.py,sha256=irYBGnJHpcX_ETFUVNzlgHQpeGy_ihUGw7EEhWbCcDc,27353
291
- biotite/structure/hbond.py,sha256=d1-aBL6f8fTTpxcNFDWDE06E7Vi4mHvdkpx6SNOuIUc,15219
292
- biotite/structure/dotbracket.py,sha256=asg6T2hO_kpAjfrCfgXLFyGbF6g8QQZRHcYG8I5ewyo,7262
293
- biotite/structure/residues.py,sha256=p1dBgy0SbIzEEebhR0AZJmCES_5iiXQA-URduMhFBow,22337
294
- biotite/structure/celllist.pyx,sha256=duKCnVnyYoFElEEF9D1AXW3AKyvYQer4JGocIh93MRY,34588
288
+ biotite/structure/hbond.py,sha256=DhVGCm9s_nNHnHhvfNUl81ph77Y-SIeFY1GGf1kPeL4,15192
289
+ biotite/structure/dotbracket.py,sha256=jl_Zqp0IINBwFPtZ0XK8rvmGmwebncbYpF26vJldIZY,7198
290
+ biotite/structure/residues.py,sha256=Fbng2Pxib4dgkijP6zREguDYwm8L0RxbbJxpuU-cv0U,21834
291
+ biotite/structure/spacegroups.json,sha256=SxP_900pi9iQruI_cgE1CTxl4k5kqOppv-nDyx64d3k,51558
292
+ biotite/structure/celllist.pyx,sha256=vRYrg7F1NqWmFatFuVrxXKUnySzCNhM2uMyI2fASOq4,34563
295
293
  biotite/structure/io/util.py,sha256=ivgxUZI4-Muv4cC6cLQdkYyk0TRhcnHi7J5DIX95BmI,1016
296
294
  biotite/structure/io/trajfile.py,sha256=FQGtW5d1BRQ0fgNN9ObUADPvP9shO6Ls8zJvSsaSZ-M,25397
297
295
  biotite/structure/io/__init__.py,sha256=Lxmd8x6lpWz8nA0QhXmrgjvD_mOP0KyGmEzsVGzxXX4,998
@@ -301,13 +299,13 @@ biotite/structure/io/dcd/file.py,sha256=jaU81fvGl4WG0zXB1dBKTOtSvFF3fS0kxeNR-wwp
301
299
  biotite/structure/io/trr/__init__.py,sha256=5WNHMGiHNNzYdoiybE6Cs0bYAcznS5D3ABu7gHDJ__A,359
302
300
  biotite/structure/io/trr/file.py,sha256=2LjaLoKYfNgyQGSEfQ1TdZQqaPyrBh3irbJdmEKFTMI,1235
303
301
  biotite/structure/io/pdbx/bcif.py,sha256=k7WtZNB4U9czi00P1EpELZh8ty6cXRezll3yXdmiYOQ,21137
304
- biotite/structure/io/pdbx/convert.py,sha256=HBeN_2wmX5yhNK3mptFOwxxiCs1lPEwYDHxgsRUNTAk,73394
305
- biotite/structure/io/pdbx/encoding.pyx,sha256=ySywnGIvlDER4tcQzFMEgWkQJN_sMzB__MHbRQ0-wxc,31184
302
+ biotite/structure/io/pdbx/convert.py,sha256=zGJsDmcbfB0xpigeTK0hyWsPANPnEv6eezxmg3Y2Bg8,79897
303
+ biotite/structure/io/pdbx/encoding.pyx,sha256=D8jUdfLXkXxFmut3Eu6V5ZUxQlBGgCS-eIWD0hasPxw,32128
306
304
  biotite/structure/io/pdbx/__init__.py,sha256=DlVXhrcuAF9A6Gim_JMccz-j8jDZuF2liDDA5cZxzx8,717
307
- biotite/structure/io/pdbx/compress.py,sha256=2ut2xFL34f2dcWoYkNMmBMlrDzkqnvygxYLHL9JvuVs,11800
305
+ biotite/structure/io/pdbx/compress.py,sha256=v5QbZIgd22FrdbazaL7DFdLBvkICwMI5G3FaRKqNUdA,13310
308
306
  biotite/structure/io/pdbx/cif.py,sha256=nTlgtU78Mb7IjEebwW-XuOAgEz9z5rAjD7A32IaEQek,34868
309
307
  biotite/structure/io/pdbx/component.py,sha256=xnVVqpbBAj8ED4SCYx1tF6jHXCRVK8NWHcoG-fH7QVg,8398
310
- biotite/structure/io/pdbx/encoding.cpython-311-darwin.so,sha256=DlKxrCAUhfAkBbJgl27S7uVEqSqL5A3nJ4vFYFyOpZo,1180272
308
+ biotite/structure/io/pdbx/encoding.cpython-311-darwin.so,sha256=neXIEdYqeG6qIwO7JIPfBT_LXLYfoK82ILYn9bJu2Sk,1182496
311
309
  biotite/structure/io/xtc/__init__.py,sha256=ipZjsWBil-h2ujdlEobyI2jGy5xsfRVOPAyCsYAJ7G4,357
312
310
  biotite/structure/io/xtc/file.py,sha256=PknO2-xzLgKTBW5Gig5Hv1HUZ4BIHRf2con2MLxEwNU,1235
313
311
  biotite/structure/io/pdbqt/convert.py,sha256=xF4m-tZG_4ykhZsknqUivFXbb6VqLXVLwmhi1AbOmuw,4008
@@ -323,11 +321,11 @@ biotite/structure/io/mol/__init__.py,sha256=WvcNPDdf9W1zPyJ0tjTvGNxA83ht18uRQA8B
323
321
  biotite/structure/io/mol/ctab.py,sha256=yWhR81XMuWKrO3DVFG6hRgnvjOYQ7ituGTW7EnfDchs,14120
324
322
  biotite/structure/io/mol/mol.py,sha256=qp_yQ6tUIMmJNjzCqtle92mw_VJm4hkS0TRRJxAegS0,5461
325
323
  biotite/structure/io/mol/sdf.py,sha256=09GRt6OGdsWH-ccgR8tXVvDM6pCUhnsZdPRv9Dx_QQU,32975
326
- biotite/structure/io/pdb/convert.py,sha256=uiTLwWkXvc1VpGaHe-yRon4DpM0ZQh0ngEyU0whdvJU,10720
324
+ biotite/structure/io/pdb/convert.py,sha256=ECG8KFmduPN2xd7HWqJweYabn-IFdnhxVNtO3AkzLaQ,13800
327
325
  biotite/structure/io/pdb/__init__.py,sha256=5NbUMDRKIe7jJ2ByRHpMhJzY_vIasjSgO63Zxrpq8BM,733
328
- biotite/structure/io/pdb/file.py,sha256=27FCuvPzidmwf5tSRAtXfUTUbptKu-IHRvi-67Ld40E,50354
326
+ biotite/structure/io/pdb/file.py,sha256=4N6E-iNhSvbZ98HmvcS-dI9qUCnwoZD4NqxrfwGMMx4,53635
329
327
  biotite/structure/io/pdb/hybrid36.pyx,sha256=BKV7oh0xrrjqVrkhTn7KEolon57fUhlG4Yf0Tf22wuU,8036
330
- biotite/structure/io/pdb/hybrid36.cpython-311-darwin.so,sha256=KGSy6nnLwiU16OM1Yv98Q___ZTDNz1ek-BzQhc8HuCg,210096
328
+ biotite/structure/io/pdb/hybrid36.cpython-311-darwin.so,sha256=lQLc3VdQdXfJO1Jl9uYR5-C4cDYlv7rGFRyhGXyH9Pw,210096
331
329
  biotite/structure/alphabet/pb.py,sha256=ksJKkYj4y3jzfvgFUF7g99W981RvH46RXKe3RW5fkR8,5994
332
330
  biotite/structure/alphabet/unkerasify.py,sha256=P-EY9gbWglJHPF9xp_SivF67bIQE73403htyJMu4-nE,3301
333
331
  biotite/structure/alphabet/encoder_weights_3di.kerasify,sha256=m4JF4oVWBbiu6r8DM9ONQ5Bmcbqwr5dxKfqYThOmHpk,1032
@@ -336,7 +334,7 @@ biotite/structure/alphabet/encoder.py,sha256=2BWLMdGBr2bHw09vMhbzPztMKSnVt8UhUf8
336
334
  biotite/structure/alphabet/i3d.py,sha256=SLJkVWiKl-EXMcsv8gcKF4zujoR5L8sQRyo9fnrETPM,3009
337
335
  biotite/structure/alphabet/pb.license,sha256=OkDCfXO06BfooLXYC3iF7LXXB_Uqqex1B2gjUEFdUZI,1091
338
336
  biotite/structure/alphabet/layers.py,sha256=Y1Y8G2LqqzC7M0kNUv8k-EXTVVKGLnPDJKdRrVEf3H4,2087
339
- biotite/structure/info/components.bcif,sha256=ClKq5vYpizeAB7JSaz-ZnZ_rby7mVVn3MS5bv8muoqU,59077222
337
+ biotite/structure/info/components.bcif,sha256=ouff7fpRp47Fq6CYsKBZlLpHkaN6x6X6q-dVnRs7uro,59990720
340
338
  biotite/structure/info/misc.py,sha256=hAvTh8KdkPGsh9Y2mGxDRRt9ZDPgCoAGLHr1smCANlg,3428
341
339
  biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
342
340
  biotite/structure/info/__init__.py,sha256=k08kdsKlrxaVQ9x8MjEXoVFaXl1J8OcpLf6iG7dUgOY,698
@@ -348,5 +346,9 @@ biotite/structure/info/masses.py,sha256=HOdaeFZkd5LSrl00025S1MwXT7im8V-s0bU54tr1
348
346
  biotite/structure/info/atoms.py,sha256=9uytsei3Y4zxExhnda4y4vuxmIO6gOndJYeXroC86yU,3010
349
347
  biotite/structure/info/ccd.py,sha256=A3-YomYJS3bbAfntLpvwLkmCgQFjR2suMwFnGQsgPXg,5851
350
348
  biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
351
- biotite/structure/graphics/rna.py,sha256=w7zFMKo2ZZ4n60SkbkupEXPxe3-KUNa261PF784ry8k,12016
349
+ biotite/structure/graphics/rna.py,sha256=1fa-_ROxHIdCQu4nFEmDWqWnQlXA6iZDZDprKST_h_g,11842
352
350
  biotite/structure/graphics/atoms.py,sha256=988_URX4hfTE3oBOYgAvZruOrzogMPcFKiTT5RJL01E,8116
351
+ biotite-1.3.0.dist-info/RECORD,,
352
+ biotite-1.3.0.dist-info/WHEEL,sha256=fm1N917lvYihbGT4OyonPrhA6HCp511clhZcK6Fbvns,133
353
+ biotite-1.3.0.dist-info/METADATA,sha256=gcnHDjnEHlvw3vQKLx2ZpW64zoh-snCRfNU0n0erVEw,5525
354
+ biotite-1.3.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
@@ -1,4 +1,6 @@
1
1
  Wheel-Version: 1.0
2
- Generator: hatchling 1.25.0
2
+ Generator: hatchling 1.27.0
3
3
  Root-Is-Purelib: false
4
4
  Tag: cp311-cp311-macosx_11_0_arm64
5
+ Generator: delocate 0.13.0
6
+