biotite 1.1.0__cp313-cp313-macosx_11_0_arm64.whl → 1.2.0__cp313-cp313-macosx_11_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of biotite might be problematic. Click here for more details.

Files changed (155) hide show
  1. biotite/application/application.py +3 -3
  2. biotite/application/autodock/app.py +1 -1
  3. biotite/application/blast/webapp.py +1 -1
  4. biotite/application/clustalo/app.py +1 -1
  5. biotite/application/localapp.py +2 -2
  6. biotite/application/msaapp.py +10 -10
  7. biotite/application/muscle/app3.py +3 -3
  8. biotite/application/muscle/app5.py +3 -3
  9. biotite/application/sra/app.py +0 -5
  10. biotite/application/util.py +21 -1
  11. biotite/application/viennarna/rnaalifold.py +8 -8
  12. biotite/application/viennarna/rnaplot.py +3 -1
  13. biotite/application/viennarna/util.py +1 -1
  14. biotite/application/webapp.py +1 -1
  15. biotite/database/afdb/__init__.py +12 -0
  16. biotite/database/afdb/download.py +191 -0
  17. biotite/database/entrez/dbnames.py +10 -0
  18. biotite/database/entrez/download.py +9 -10
  19. biotite/database/entrez/key.py +1 -1
  20. biotite/database/entrez/query.py +5 -4
  21. biotite/database/pubchem/download.py +6 -6
  22. biotite/database/pubchem/error.py +10 -0
  23. biotite/database/pubchem/query.py +12 -23
  24. biotite/database/rcsb/download.py +3 -2
  25. biotite/database/rcsb/query.py +2 -3
  26. biotite/database/uniprot/check.py +2 -2
  27. biotite/database/uniprot/download.py +2 -5
  28. biotite/database/uniprot/query.py +3 -4
  29. biotite/file.py +14 -2
  30. biotite/interface/__init__.py +19 -0
  31. biotite/interface/openmm/__init__.py +16 -0
  32. biotite/interface/openmm/state.py +93 -0
  33. biotite/interface/openmm/system.py +227 -0
  34. biotite/interface/pymol/__init__.py +198 -0
  35. biotite/interface/pymol/cgo.py +346 -0
  36. biotite/interface/pymol/convert.py +185 -0
  37. biotite/interface/pymol/display.py +267 -0
  38. biotite/interface/pymol/object.py +1226 -0
  39. biotite/interface/pymol/shapes.py +178 -0
  40. biotite/interface/pymol/startup.py +169 -0
  41. biotite/interface/rdkit/__init__.py +15 -0
  42. biotite/interface/rdkit/mol.py +490 -0
  43. biotite/interface/version.py +71 -0
  44. biotite/interface/warning.py +19 -0
  45. biotite/sequence/align/__init__.py +0 -4
  46. biotite/sequence/align/alignment.py +33 -11
  47. biotite/sequence/align/banded.cpython-313-darwin.so +0 -0
  48. biotite/sequence/align/banded.pyx +21 -21
  49. biotite/sequence/align/cigar.py +2 -2
  50. biotite/sequence/align/kmeralphabet.cpython-313-darwin.so +0 -0
  51. biotite/sequence/align/kmeralphabet.pyx +2 -2
  52. biotite/sequence/align/kmersimilarity.cpython-313-darwin.so +0 -0
  53. biotite/sequence/align/kmertable.cpython-313-darwin.so +0 -0
  54. biotite/sequence/align/kmertable.pyx +6 -6
  55. biotite/sequence/align/localgapped.cpython-313-darwin.so +0 -0
  56. biotite/sequence/align/localgapped.pyx +47 -47
  57. biotite/sequence/align/localungapped.cpython-313-darwin.so +0 -0
  58. biotite/sequence/align/localungapped.pyx +10 -10
  59. biotite/sequence/align/matrix.py +12 -3
  60. biotite/sequence/align/multiple.cpython-313-darwin.so +0 -0
  61. biotite/sequence/align/pairwise.cpython-313-darwin.so +0 -0
  62. biotite/sequence/align/pairwise.pyx +35 -35
  63. biotite/sequence/align/permutation.cpython-313-darwin.so +0 -0
  64. biotite/sequence/align/selector.cpython-313-darwin.so +0 -0
  65. biotite/sequence/align/selector.pyx +2 -2
  66. biotite/sequence/align/statistics.py +1 -1
  67. biotite/sequence/align/tracetable.cpython-313-darwin.so +0 -0
  68. biotite/sequence/alphabet.py +2 -2
  69. biotite/sequence/annotation.py +19 -13
  70. biotite/sequence/codec.cpython-313-darwin.so +0 -0
  71. biotite/sequence/codon.py +1 -2
  72. biotite/sequence/graphics/alignment.py +25 -39
  73. biotite/sequence/graphics/dendrogram.py +4 -2
  74. biotite/sequence/graphics/features.py +2 -2
  75. biotite/sequence/graphics/logo.py +10 -12
  76. biotite/sequence/io/fasta/convert.py +1 -2
  77. biotite/sequence/io/fasta/file.py +1 -1
  78. biotite/sequence/io/fastq/file.py +3 -3
  79. biotite/sequence/io/genbank/file.py +3 -3
  80. biotite/sequence/io/genbank/sequence.py +2 -0
  81. biotite/sequence/io/gff/convert.py +1 -1
  82. biotite/sequence/io/gff/file.py +1 -2
  83. biotite/sequence/phylo/nj.cpython-313-darwin.so +0 -0
  84. biotite/sequence/phylo/tree.cpython-313-darwin.so +0 -0
  85. biotite/sequence/phylo/upgma.cpython-313-darwin.so +0 -0
  86. biotite/sequence/profile.py +19 -25
  87. biotite/sequence/search.py +0 -1
  88. biotite/sequence/seqtypes.py +12 -5
  89. biotite/sequence/sequence.py +1 -2
  90. biotite/structure/__init__.py +2 -0
  91. biotite/structure/alphabet/i3d.py +1 -2
  92. biotite/structure/alphabet/pb.py +1 -2
  93. biotite/structure/alphabet/unkerasify.py +8 -2
  94. biotite/structure/atoms.py +35 -27
  95. biotite/structure/basepairs.py +26 -26
  96. biotite/structure/bonds.cpython-313-darwin.so +0 -0
  97. biotite/structure/bonds.pyx +8 -5
  98. biotite/structure/box.py +19 -21
  99. biotite/structure/celllist.cpython-313-darwin.so +0 -0
  100. biotite/structure/celllist.pyx +83 -67
  101. biotite/structure/chains.py +5 -37
  102. biotite/structure/charges.cpython-313-darwin.so +0 -0
  103. biotite/structure/compare.py +420 -13
  104. biotite/structure/density.py +1 -1
  105. biotite/structure/dotbracket.py +27 -28
  106. biotite/structure/filter.py +8 -8
  107. biotite/structure/geometry.py +15 -15
  108. biotite/structure/hbond.py +17 -19
  109. biotite/structure/info/atoms.py +11 -2
  110. biotite/structure/info/ccd.py +0 -2
  111. biotite/structure/info/components.bcif +0 -0
  112. biotite/structure/info/groups.py +0 -3
  113. biotite/structure/info/misc.py +0 -1
  114. biotite/structure/info/radii.py +92 -22
  115. biotite/structure/info/standardize.py +1 -2
  116. biotite/structure/integrity.py +4 -6
  117. biotite/structure/io/general.py +2 -2
  118. biotite/structure/io/gro/file.py +8 -9
  119. biotite/structure/io/mol/convert.py +1 -1
  120. biotite/structure/io/mol/ctab.py +33 -28
  121. biotite/structure/io/mol/mol.py +1 -1
  122. biotite/structure/io/mol/sdf.py +39 -13
  123. biotite/structure/io/pdb/convert.py +2 -3
  124. biotite/structure/io/pdb/file.py +11 -22
  125. biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so +0 -0
  126. biotite/structure/io/pdbqt/file.py +4 -4
  127. biotite/structure/io/pdbx/bcif.py +22 -7
  128. biotite/structure/io/pdbx/cif.py +20 -7
  129. biotite/structure/io/pdbx/component.py +6 -0
  130. biotite/structure/io/pdbx/compress.py +2 -2
  131. biotite/structure/io/pdbx/convert.py +222 -33
  132. biotite/structure/io/pdbx/encoding.cpython-313-darwin.so +0 -0
  133. biotite/structure/io/trajfile.py +9 -6
  134. biotite/structure/io/util.py +38 -0
  135. biotite/structure/mechanics.py +0 -1
  136. biotite/structure/molecules.py +0 -15
  137. biotite/structure/pseudoknots.py +7 -13
  138. biotite/structure/repair.py +2 -4
  139. biotite/structure/residues.py +13 -24
  140. biotite/structure/rings.py +335 -0
  141. biotite/structure/sasa.cpython-313-darwin.so +0 -0
  142. biotite/structure/sasa.pyx +2 -1
  143. biotite/structure/segments.py +68 -9
  144. biotite/structure/sequence.py +0 -1
  145. biotite/structure/sse.py +0 -2
  146. biotite/structure/superimpose.py +74 -62
  147. biotite/structure/tm.py +581 -0
  148. biotite/structure/transform.py +12 -25
  149. biotite/structure/util.py +3 -3
  150. biotite/version.py +9 -4
  151. biotite/visualize.py +111 -1
  152. {biotite-1.1.0.dist-info → biotite-1.2.0.dist-info}/METADATA +5 -3
  153. {biotite-1.1.0.dist-info → biotite-1.2.0.dist-info}/RECORD +155 -135
  154. {biotite-1.1.0.dist-info → biotite-1.2.0.dist-info}/WHEEL +0 -0
  155. {biotite-1.1.0.dist-info → biotite-1.2.0.dist-info}/licenses/LICENSE.rst +0 -0
@@ -1,119 +1,136 @@
1
- biotite-1.1.0.dist-info/RECORD,,
2
- biotite-1.1.0.dist-info/WHEEL,sha256=yOvBCU9sSrzqnOtqZPKO_M2NJbMIdgkRdUvI1xBMjbo,105
3
- biotite-1.1.0.dist-info/METADATA,sha256=AWoJEvD_xouBG2_P5lKh-FPZOZQ9C12cRsO8GsBMBfE,7224
4
- biotite-1.1.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
5
- biotite/version.py,sha256=CqDGE4B1ZqZ-56mxeOFcXRTmlxrdOh4ayrjbcPjziE4,411
1
+ biotite-1.2.0.dist-info/RECORD,,
2
+ biotite-1.2.0.dist-info/WHEEL,sha256=yOvBCU9sSrzqnOtqZPKO_M2NJbMIdgkRdUvI1xBMjbo,105
3
+ biotite-1.2.0.dist-info/METADATA,sha256=mwg-xyNoWLydJEG7E-KM3V1J3LOto8ZVlu4SZpEp1VA,7318
4
+ biotite-1.2.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
5
+ biotite/version.py,sha256=V2bJXGFUmn_IdFy3HF4zr3V9woAW6i1X0GXwu8-ZCDs,511
6
6
  biotite/copyable.py,sha256=C7ycTQxqanxT0SmXhzy5OLp7NpZdNWHyokozdoVDGNA,1897
7
7
  biotite/__init__.py,sha256=rL8ZyaCUjOrECEvRxyHj8MOMp4FHMJ8n6KKgrYf5OAQ,545
8
- biotite/visualize.py,sha256=EYUBKgeNrkPI53f7L4T893NMmLWgBp07aO2XFcdpYTU,10012
9
- biotite/file.py,sha256=TQLcN1FzEbEEOLdR0RUfHr9WPIkmULifHG_LoEWZV3w,6524
8
+ biotite/visualize.py,sha256=GSxIL8PLXMDlaULG-ckSghRifQnBnkseZ-OWsnuno4M,13955
9
+ biotite/file.py,sha256=j95OcMIMkpFRZDNvvXwSqJYvwc_7eCG2GKV1hKlfugE,6733
10
10
  biotite/setup_ccd.py,sha256=sWHyRm78imJybCzPu_W-gKR_itxrVwEEGJxMq6YlzIE,6051
11
11
  biotite/database/error.py,sha256=3xyutl2nPzgBZqe5fpejOp6AQXAvtxO2hy_oWRrlcKI,410
12
12
  biotite/database/__init__.py,sha256=C_7zQxecZAB_x-4F_3JtU86TnB2GuxQju2mwfnLLy1M,725
13
13
  biotite/database/entrez/check.py,sha256=5ITmnDoV6-lmfxux-HpXCUjcnI0dyYBwr-mqGkIb5e0,1853
14
- biotite/database/entrez/query.py,sha256=D9f7nY6eCrVTMduDkskXmAAgRA4r11TY3gpkH2UokFA,7374
15
- biotite/database/entrez/key.py,sha256=JS9GxvUMSYYmb2wU5uQduKUjITXRfY62aFyUH7_OMTU,1112
16
- biotite/database/entrez/download.py,sha256=RsB1xgcVSY_fjM1v2CMGwjImWG5e5qFg4_pttdgBxq4,7376
14
+ biotite/database/entrez/query.py,sha256=_TwBNkWAMoUWFKF45xD9WVvfvcpesMv4WgRJU3ctiGs,7373
15
+ biotite/database/entrez/key.py,sha256=QZxGwwq0xbb9Nz8mTFQ-0C8nptxIqtGCmtDKFu0OBhg,1108
16
+ biotite/database/entrez/download.py,sha256=luFFDQMhk2hZtJpGHNqm817qc0I-0e73lzJlepSZ0Ms,7433
17
17
  biotite/database/entrez/__init__.py,sha256=-hAxLc_DdszhiCj6OO_jgSY-xmD05rC4urdUNHusr4s,388
18
- biotite/database/entrez/dbnames.py,sha256=57WUYPlTtPRne74fypNgFnE0cl91_WSRwzkoQsGjR6Q,2620
19
- biotite/database/uniprot/check.py,sha256=TJeIGnPGVOEXrvn4V4EIJs0NEXnvWDfXDAgZzSs2evY,1373
20
- biotite/database/uniprot/query.py,sha256=XZHNAARmrJP2zDVrdL3kmRl-LK_rTPweIGseBogCcqU,7551
21
- biotite/database/uniprot/download.py,sha256=HmWrYpNzpSvGGZP26xk0nzAv4fwzhA8mDZ4moexWgc4,4308
18
+ biotite/database/entrez/dbnames.py,sha256=Ddp5IbbBaCsECO4aX9GQiIpOcTK1iIW2u2dfx7Fr2jA,2772
19
+ biotite/database/uniprot/check.py,sha256=ngqCC9eeolz6jowHu3rnDbw1q4vvNgMP7x7EXPO14vA,1378
20
+ biotite/database/uniprot/query.py,sha256=zvk0zqAxr0mNw0RYvYGKecqCA6Cj2wtxliWjkrJmKUw,7518
21
+ biotite/database/uniprot/download.py,sha256=tomBGHnmVZ8J8DHnWqVJiJIR50l9aJQCq9bGCC9yVVg,4234
22
22
  biotite/database/uniprot/__init__.py,sha256=Lsk5Jd-qb5167VTgN48lWSSbqpjCM-fD0XKJyxaZb7o,334
23
- biotite/database/pubchem/error.py,sha256=_-SE2w-Jx5HqL8ll5deiaXAKAeEPC0ysSG6F3Mm8AGA,713
24
- biotite/database/pubchem/query.py,sha256=czvfK8KttZQviw65NsdYFqt-IECW77cN6TrocU7d8oA,26448
25
- biotite/database/pubchem/download.py,sha256=5Se2dU0jB0MPrfCfwuwDDUgO_k7BkRqegDl9c_76IGw,9867
23
+ biotite/database/pubchem/error.py,sha256=Qj6fxWm2HjGa79m5nfGVyPuhBPp54wa2KLMlKbhj-qQ,878
24
+ biotite/database/pubchem/query.py,sha256=Z_DVRY62HhelCtMr3xwUOZBBUpNCwTKVC8ey9dG1HHs,26086
25
+ biotite/database/pubchem/download.py,sha256=p1UtPJ1YuccDWLsXE4Zd410RwqgbwCHj5ZDcISQ6-5U,9870
26
26
  biotite/database/pubchem/__init__.py,sha256=xjwfutIL4-JeTs7v4wCkRyy5q4KE7fGWDvo46ubkXt4,669
27
27
  biotite/database/pubchem/throttle.py,sha256=HXf2l7EW5RLdW0bg72uSdXCDZXFXOE49akhfgKhEdc8,3286
28
- biotite/database/rcsb/query.py,sha256=DAXZJbI8lUey80MuA1QNetqv3MgqaAaY3jM9MhrjrTg,32919
29
- biotite/database/rcsb/download.py,sha256=8q0yA5LL9avzWpy1I6s-59VRHg3mhuJltIldEN5CmU0,5622
28
+ biotite/database/rcsb/query.py,sha256=Ar2uZRuOCMm0RQeMATHfAeTeW5G8eNfg2Iy5qMMZ8JU,32895
29
+ biotite/database/rcsb/download.py,sha256=AtRljEV60NReeuWno-YFNrzrpFY_hetghO31-8VojtE,5676
30
30
  biotite/database/rcsb/__init__.py,sha256=sTJnL4vYwhO7gSszMuT_Lr91uwX0wM1h-fZWiZkITYA,332
31
- biotite/application/util.py,sha256=8iReyUmCizsbhkUv1t5QKx5tH9M101ebKy4EnviP2v4,2111
32
- biotite/application/localapp.py,sha256=JeiqQxP9JgV_kCaYXi14I_cfsxZZDEieymNaN_5sKqw,10270
33
- biotite/application/webapp.py,sha256=ysKcsdAPlOZVMq3aCHVD8VdGyrrFjEDklMre6aytSTs,2161
31
+ biotite/database/afdb/download.py,sha256=sIaGz0hTj1MBA_XIw9HCP6NGnPfNAyPgryOhLuRa9i8,6367
32
+ biotite/database/afdb/__init__.py,sha256=VqRn4WE6wJWS4Sd916xchmMz7tyPpEflnwOVnInhEOs,333
33
+ biotite/interface/version.py,sha256=B5SBAMUnERPZJKcOJAa02iEx01eH12q22OQ6PA6wDjQ,2364
34
+ biotite/interface/__init__.py,sha256=CEbr_8h6pt3za2ybSeePcNKMsA2vkNUbzYhzP62g2Lg,717
35
+ biotite/interface/warning.py,sha256=rU1F-b1MeIj1OWaK6wMeuM_YE-WKNGqo2TehjTr10KM,577
36
+ biotite/interface/pymol/startup.py,sha256=8W0wIx13MGqGNvwTTT7ogmgypXCO48PI5w-DVPdS9jw,4619
37
+ biotite/interface/pymol/shapes.py,sha256=Q34C5H5PkH4XbnyymwbJYp9iFD2Idj2a_qzDRA8tohQ,6066
38
+ biotite/interface/pymol/object.py,sha256=5_zG4rn-sjreAHGdRLW45IxK9A096zXjgxn1cEgOVag,44193
39
+ biotite/interface/pymol/convert.py,sha256=ldLXSiFdwhEkoZkTtLFOMvymIh9oLniChve54SbHJLA,6044
40
+ biotite/interface/pymol/__init__.py,sha256=Rjp-b6GbSEKKHlHi38umHCZO1re11nnT3dMHbnVBLSc,6568
41
+ biotite/interface/pymol/display.py,sha256=KJfCM9-hzvFdC5KFxvG5-oEXd0MIaf3Ocr3dMQVoipY,8458
42
+ biotite/interface/pymol/cgo.py,sha256=wlG1GkbHAGYVdzaOUPQ5KzI-29lrDkutt0NRw7PIq-8,9859
43
+ biotite/interface/rdkit/__init__.py,sha256=9TJsZQl76H1pKsRpsciQE6afbBzQ_lTUd-pIduu6N8Q,451
44
+ biotite/interface/rdkit/mol.py,sha256=T4Nnc3ttQFfy-4YbbSRLuTpcAhahWjqQGwM7fypouEs,19644
45
+ biotite/interface/openmm/system.py,sha256=V-SDc1YDa6nKHcREXz1cGAN7jZJ2X1cPf0gazz_Gv6s,7018
46
+ biotite/interface/openmm/__init__.py,sha256=PlstOsDTpt4LIxRkctD4hY9AKtImxXubNwCeP_YMWHY,505
47
+ biotite/interface/openmm/state.py,sha256=jmdLw1xc7TQbgeOnZGgSgdmD_rR9VEnMqhX0Wnw_1Jo,2723
48
+ biotite/application/util.py,sha256=-d4D9-hxPoXPDzYC-xkWAPVg2U-KGZcs71T-Aelw23o,2503
49
+ biotite/application/localapp.py,sha256=kN34ncpN1XamVUONU80UWxZZke03XcYSsjdDAfpMCF8,10267
50
+ biotite/application/webapp.py,sha256=ATD_JKb68qZEc71YgBrEgdO2nxdJ-C25KBsofzGFDQE,2145
34
51
  biotite/application/__init__.py,sha256=gOy5iGp5uuKTd0qpR9LgsmanB3ZfdQaTnZcKMRDwSx8,3079
35
- biotite/application/application.py,sha256=KbrqhjBLtkjEix0puJ9VpLQoc3vs4hQZ1kW5O1c55vw,8098
36
- biotite/application/msaapp.py,sha256=hDoyPyDjJVt0qQSZLlR7DLSA0uJ3qTmAke-dP725_ik,11976
52
+ biotite/application/application.py,sha256=MLMft5z1ocBMsTOXkUg-ZeZj0jC8l6WHrYSjgkE7iW8,8096
53
+ biotite/application/msaapp.py,sha256=6e88Q7vgGSK_5uKdOVPcZF6wMKDRGYEKrvc9tb0yjbs,11974
37
54
  biotite/application/dssp/__init__.py,sha256=lUf-A2rJzPLJYZQZGpZUt7HtA0M59KaX6zQSCrkhfF4,323
38
55
  biotite/application/dssp/app.py,sha256=tHoG8uFmX8WaBHm0Fhjc7D0NXEaMa-zkLvwFzyP4FQk,5323
39
- biotite/application/viennarna/rnaalifold.py,sha256=DmsHVi18izXS0ee6FN6MfgrCEScw9v9qSvkGOjHs8IU,10608
40
- biotite/application/viennarna/util.py,sha256=4jvZRRBSxPHzT9HJ9jooUzarUg5JTzDMoQASuBvTSqI,2634
56
+ biotite/application/viennarna/rnaalifold.py,sha256=QawXG9hYKQzdRt8-J_WiXUcoJx7Whps-iSCzq7DFJEA,10683
57
+ biotite/application/viennarna/util.py,sha256=racSlWGMtRRNtc_wh-ggIJWPDNoxIqwejc_Ztgusk8Q,2635
41
58
  biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
42
- biotite/application/viennarna/rnaplot.py,sha256=Z8TdKvd3mYAdUOdPLdsY10aeHVDsoXKJxsiChWkfjy8,6416
59
+ biotite/application/viennarna/rnaplot.py,sha256=caKDQ4feNkCnFa7__MUAnY8JMmoS6-0PX_hl__u4oPY,6496
43
60
  biotite/application/viennarna/rnafold.py,sha256=Tr6VfGLkzNhcGujND_k5XUb9uYAMsysnDWQ6oTcIamE,7910
44
61
  biotite/application/sra/__init__.py,sha256=8I-uPkWUiu_ePPp56mI8MkwIOnjjQODpH0YMeOh8Leg,553
45
- biotite/application/sra/app.py,sha256=llsaWNJJaZpvTL1AOl4xWOdsv84AmQaT5LRnWqGii4Q,15864
62
+ biotite/application/sra/app.py,sha256=qb1hRAXcR2xzzy0OeT5YaV-GLrzOnZDp3EZ6hllhQ80,15574
46
63
  biotite/application/autodock/__init__.py,sha256=EhnSP7PGczduv0J0FovH34g49-ruQVHrRWyfz5F0ZCY,315
47
- biotite/application/autodock/app.py,sha256=u-ini9dbq6vkpMQfc28HdyNNxbK-DKoQmHEmSHQ1hn4,18686
64
+ biotite/application/autodock/app.py,sha256=rXKOxNPRrAJDe9nYSSM0kN3_f7xrwGsvuVtGmgINzhQ,18692
48
65
  biotite/application/blast/alignment.py,sha256=r9CfjvHcDCqOrR6YC-IWXq8l76qujYAz4xFfb65sfSo,3117
49
- biotite/application/blast/webapp.py,sha256=TdM-QSIk08O9o1wbqvQhbSGQWOrFZwO9UKvPE-2nE0U,14463
66
+ biotite/application/blast/webapp.py,sha256=_sHlSR1OdhB0bZkS9KiD3z3CXyop0g9MeR1XtRQakNo,14447
50
67
  biotite/application/blast/__init__.py,sha256=hZ031_9ikNQ7j87uaW5OAWbUx3R4qtqpyI1ff8lDTMM,366
51
68
  biotite/application/tantan/__init__.py,sha256=jkRIs_OYhF3pSd5EXrnfbFc7S96a_F87hq2pXk3BxHo,328
52
69
  biotite/application/tantan/app.py,sha256=4tTLuTEy46nGsyy5wvDrB49fXjjV3SpnEXN6y6QXxTQ,7438
53
70
  biotite/application/mafft/__init__.py,sha256=VQPqkbQPAvGePLTb-Kgd1exMxDT5onbab34ukX7fiNk,315
54
71
  biotite/application/mafft/app.py,sha256=gzcJZdUs5Qys0aK1uAcsMNrBB4sIjbju4Sc1hJ3JPh4,3281
55
72
  biotite/application/clustalo/__init__.py,sha256=nHtEaPTQU3oXfZZhe9TyA55NzFknFyAkALLuEn-C6ys,326
56
- biotite/application/clustalo/app.py,sha256=JdICuA14SHdiuYPt6Y1cc1d6zHTNZaXzoPk_y0Nb5H0,7417
57
- biotite/application/muscle/app3.py,sha256=C-W7MOHjwfb4ioKtVeVSAOD9sbO58bCdG8rRhy_vxzU,7613
73
+ biotite/application/clustalo/app.py,sha256=f5NEOkKCiTDlIVNJ1ozefzixwndVC4_vPQq8a9rzUt4,7414
74
+ biotite/application/muscle/app3.py,sha256=Otgzi3VEYv0iQ_q5TesRJEfB6krbF7wXxfN87JzdKFg,7653
58
75
  biotite/application/muscle/__init__.py,sha256=B1JrhQYjgwSKWxpcYgXS91f2GM5Tc1i9Ocs2wElslRs,338
59
- biotite/application/muscle/app5.py,sha256=9h7kszwf0cr_z9xaWsMi2UKxYMK8Fwo_5sGyGTvmoN8,4435
60
- biotite/sequence/annotation.py,sha256=b0A1_NciOz2g3PEG0AgIcNC5XXmHap2PScbIpyKO0v8,29513
76
+ biotite/application/muscle/app5.py,sha256=xYF-iLn-UVue-vu4yGJFaQVtnPi561rwoIVwVCIu_C8,4474
77
+ biotite/sequence/annotation.py,sha256=L_TZL2Gmsuokbr6A6Y6gVa4hbEM3ox_NJ_P5PTsZ4V0,29705
61
78
  biotite/sequence/codec.pyx,sha256=ed415FTMBJfiI9WbgKRFO3tF1f_SpRHxyEafLxW-g1k,4962
62
- biotite/sequence/sequence.py,sha256=6k2WVEd4JX4pnTQ-nbtrhvLBCVEaTpsETfsiCBD5Cfk,11693
63
- biotite/sequence/profile.py,sha256=ZiCilbHx43SYvm9bDkoHDu5_-V3T5xllRZw26pTmZ-E,19375
79
+ biotite/sequence/sequence.py,sha256=eIZ7Ugz9IwXlWXs_HC2NGyAtDDcP-Vf1z82jynT_PPE,11691
80
+ biotite/sequence/profile.py,sha256=f-KYMVtSB83O5J0Jy87Nzetd4axZDVsUcMSES2J7MJY,19249
64
81
  biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
65
82
  biotite/sequence/__init__.py,sha256=fSWhobaPGRMJI6-8UYFpjguxVtP4O4cAHmiRxNAGzYI,3423
66
- biotite/sequence/codec.cpython-313-darwin.so,sha256=-cACht9Qh0ageq_8Tisk793QWjUtXIViKKKcBhifR-I,283912
67
- biotite/sequence/seqtypes.py,sha256=OvOOhWzoRCXpgXM2is6T06RV9etxLeFoLErokWuc60c,23093
68
- biotite/sequence/codon.py,sha256=6SBjwz4c6IZiAFZL03qjcrjT84zczltc14haOOAkm6Q,16392
69
- biotite/sequence/search.py,sha256=dF-OtPocZ5XAIgS4GCMt2YOKz0Oxb9b8FvPmVUY8j-k,3089
70
- biotite/sequence/alphabet.py,sha256=IqZnJZtUku9HPcRwx8ta7dRaK7knmoNW1quMcf-2ZAs,17245
83
+ biotite/sequence/codec.cpython-313-darwin.so,sha256=k3JGcxODNRzF7_kGglTtwgEcZ16IOTdyrLcEFMu_kFc,283912
84
+ biotite/sequence/seqtypes.py,sha256=I5OaC9IOJoA9G610Tod67cgCWDQqTAgYpK1FHF8Ofok,23246
85
+ biotite/sequence/codon.py,sha256=Scua9XHD-TnWfCaKHRegKQGSP3XK3wW3zLgxen45ux0,16346
86
+ biotite/sequence/search.py,sha256=G__T-GHMJODWmgh87z5wxs_g9-t1DtvEOd-USp-Qizg,3088
87
+ biotite/sequence/alphabet.py,sha256=3iTSuuAsaPtTyqyTjeU0OF5y_17wuhC3lMVbcJGwqe8,17227
71
88
  biotite/sequence/io/__init__.py,sha256=4K13uxFWe8IpNC8yuVxjDiI7-8lmXu7qT6iMmVSqPs4,314
72
89
  biotite/sequence/io/general.py,sha256=sD03pLnkxsT6vFh8806ZhErC8GEG3LF_70NMcVJyGe0,6694
73
- biotite/sequence/io/fasta/convert.py,sha256=m1uWLtCfdzI-to5WLxqiQrQKtWKBDyr14qE_54x0jLk,9421
90
+ biotite/sequence/io/fasta/convert.py,sha256=illuR8DVCKS-K3nxUO4TJZ-u_PTJzD363_5ra7Ditvk,9406
74
91
  biotite/sequence/io/fasta/__init__.py,sha256=rcpXd-Mzp-qCJC2zW3O8XSgpcefOq8ftFLvvnuYL3ec,720
75
- biotite/sequence/io/fasta/file.py,sha256=46NZiI32mqNMAzej8y6uUyCtW-gRtoxWg1v54VteDbs,9055
76
- biotite/sequence/io/gff/convert.py,sha256=6ye_ObtHfZbBoazyXqhRXhCVmLrqq65_lraSIeZDBQM,4614
92
+ biotite/sequence/io/fasta/file.py,sha256=EuFiktTtONHsEevsxkvFzpbEZ2qVdWKyNkFaVcLeaUw,9052
93
+ biotite/sequence/io/gff/convert.py,sha256=fqBNG5SbfU34wVgdHcXcRJC5sIUID-6rdskEz7Vdqes,4611
77
94
  biotite/sequence/io/gff/__init__.py,sha256=KPWsE4Hjd4QY2prhi4W4WmwW-z_kySy0ZiUOSnmyGy4,923
78
- biotite/sequence/io/gff/file.py,sha256=OxQgja-LVAYVRc1tSB5t_1mYenvNX5SJ8VtMV37Y0l0,16096
95
+ biotite/sequence/io/gff/file.py,sha256=0PYwl1KP-nv05BS6aBfzjmOqW-2O3A_R4W5UYE-k7zw,16076
79
96
  biotite/sequence/io/genbank/annotation.py,sha256=t39bqsDmLyLBTS_wc15uGOVsqJ-GRP3iXGIqJBxzUow,9431
80
97
  biotite/sequence/io/genbank/metadata.py,sha256=rhLF30_RSluJ-sulsKpUjqHNqVazvkn98fTCCoATAXs,9351
81
- biotite/sequence/io/genbank/sequence.py,sha256=2iz6gBZEPOqyDI2BOHeeR7poad2G8in1uKcy67z6pXM,5419
98
+ biotite/sequence/io/genbank/sequence.py,sha256=imZmCC1WX_PMCsbV8f9wUJu2PsZluB4JFsavcjq71W4,5504
82
99
  biotite/sequence/io/genbank/__init__.py,sha256=9H6gHYLBtZ06YkT616wwJF89G1sFToSs0QRuQ8noZBQ,473
83
- biotite/sequence/io/genbank/file.py,sha256=UQDvUUqftl7g5mMHPVrhzNzZEai8fmKDXlTfB-EifzY,20366
100
+ biotite/sequence/io/genbank/file.py,sha256=5XvuJCd_FuI2zh03_bLbLSAuORNw4tXr7p9sGutWgVA,20354
84
101
  biotite/sequence/io/fastq/convert.py,sha256=x4rWn7WHdKxW1u7mwDgM8Z3qaML4lAO7r-JiMTQbvaI,3632
85
102
  biotite/sequence/io/fastq/__init__.py,sha256=lhw9bxWS0eKPXzF1lg8fvrNmgAmJPLBzIB6jEP5GOVI,588
86
- biotite/sequence/io/fastq/file.py,sha256=OwSUw-Unp8AQc7LdpJSI2zmavBWsCcqov23HPHWaXQU,17816
87
- biotite/sequence/align/multiple.cpython-313-darwin.so,sha256=u3r4fSx0Qg27vQlW_5h3W0u2I0uuj08RkXO7RNvfOOs,493360
88
- biotite/sequence/align/permutation.cpython-313-darwin.so,sha256=cA1u9DEPVv816AofmbOKcOqMoF37XCvTY6o7cnDYEys,230512
89
- biotite/sequence/align/matrix.py,sha256=XQAdUhlA5suO9MkPhGeqXMcfxB-nD71Sybk1P_ySVP4,22103
103
+ biotite/sequence/io/fastq/file.py,sha256=Q5jrBN21Fi0hp6rU5cc68kQPYc1jWdZfMwhx0Ze6oGw,17817
104
+ biotite/sequence/align/multiple.cpython-313-darwin.so,sha256=_VKeSXN5GDiYT6OqPnBkSzZG584E2yFf2gD_xEWcS0U,493360
105
+ biotite/sequence/align/permutation.cpython-313-darwin.so,sha256=uswNvEPrCLZwyoshBOBWdYVwCLVi5sQbcKKSJgsGG38,230512
106
+ biotite/sequence/align/matrix.py,sha256=A1PUA43ltUnvYqB_RO6WPbvAtCzZI3zSfeKHP3aVSNQ,22360
90
107
  biotite/sequence/align/permutation.pyx,sha256=xbbw5DJ7c5SXnuSUl2hJUMxzvinKP1Khc7CSdH5cEE0,10028
91
- biotite/sequence/align/selector.pyx,sha256=13MYCmECOYFGoMQHgCRgKKeN74VOUSc0TnZuqRJhBo0,33471
108
+ biotite/sequence/align/selector.pyx,sha256=BstkOkz-nB2dPtkZIZbU5QlCT-h3QHxdsGg1pGUh-Qo,33471
92
109
  biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
93
- biotite/sequence/align/kmeralphabet.pyx,sha256=h21N8B1KwTHPYz0KzyM2pYuap4hDCQPfNSnqpuhJn7Q,18636
94
- biotite/sequence/align/alignment.py,sha256=Ccz-Dzo76PeNoBVLNymxf4YTgo0EelSyGTfRXkGrbdg,21693
95
- biotite/sequence/align/pairwise.cpython-313-darwin.so,sha256=cVcJJesilMh3d3jlIP51u4i-kxrYnSwUOm-dZ3MS0go,564320
110
+ biotite/sequence/align/kmeralphabet.pyx,sha256=t4MKs3uIXGn_2AB8NRKQxY73RoBLDa-IlKVnSdANkCU,18636
111
+ biotite/sequence/align/alignment.py,sha256=vf6Ldh0nevFkQ3dHJJRZw6_ZsqoWHHv-6M1Hy_DQgEs,22380
112
+ biotite/sequence/align/pairwise.cpython-313-darwin.so,sha256=DigS-5gSabAZTKPx6IGHkvlyL8N-JrSt-uRsxPenuEI,564320
96
113
  biotite/sequence/align/tracetable.pyx,sha256=1gsT3OV7VkE6i_UpNiYOLVvD2_tfJgbNZb1yv9F4XR8,15455
97
- biotite/sequence/align/pairwise.pyx,sha256=88bZUcDG3CflZPdUN_HMJaIMTKCAtBhmhq946tY__KE,22836
98
- biotite/sequence/align/localgapped.cpython-313-darwin.so,sha256=xeLtfkogKat0lowk9KEDHQba71pcPThdfinZxcGQtQU,1045216
99
- biotite/sequence/align/banded.cpython-313-darwin.so,sha256=FsxgzcbopszWRgGYEva3icjzFic_mujmU99F_FDRpaw,527184
100
- biotite/sequence/align/__init__.py,sha256=Twwj35DdxgKu9pN84u2PEtwo6MekLENbkaGbAPxB2A4,4715
101
- biotite/sequence/align/localungapped.cpython-313-darwin.so,sha256=gxv8pfLlEe9pQMXDaYXzwZyyt5jpLpPjlVvO4dkYzCM,303408
102
- biotite/sequence/align/localungapped.pyx,sha256=rj6gbuyLQIo6ZuPwVt01rs3fOSOjpzq6Vx3v6_zKdEQ,9696
114
+ biotite/sequence/align/pairwise.pyx,sha256=atF365cD9AV6StIJRhFqvg12i9mmEHf1KvJJf0gTaqo,22680
115
+ biotite/sequence/align/localgapped.cpython-313-darwin.so,sha256=-7RDDmGkWXrOo9UNn2Tqp8Vkusn5Iv8W-GGCk3W3-_c,1045216
116
+ biotite/sequence/align/banded.cpython-313-darwin.so,sha256=Y6ACL5DRJd-malfRb_C6HMGIlFNQxc3OXWa8E0B-hOI,527184
117
+ biotite/sequence/align/__init__.py,sha256=NyYyB9PmYWCBQB_MaI-L54vYR64JraUvP9uobGJN54w,4711
118
+ biotite/sequence/align/localungapped.cpython-313-darwin.so,sha256=P8KP7I1RbtE9uOodf9nMqW1R_EA5QSJvLZ4WwKZOr2Y,303408
119
+ biotite/sequence/align/localungapped.pyx,sha256=h9wgrY85_t0_wOGDW56uJ9N4bo7GciYpeJZpNIBlp4g,9660
103
120
  biotite/sequence/align/buckets.py,sha256=k8H5RBS5Y7DrMoIOd5Ifrxp-nYWosJuqOYgLd1y-DWs,2464
104
- biotite/sequence/align/selector.cpython-313-darwin.so,sha256=6PbPf6u2AiFx9nJkjWfu9Ec-nlBSxCWimuqIcGIHUJ4,322528
105
- biotite/sequence/align/localgapped.pyx,sha256=djdmgvACXde0dyqbKttc4itgu0MNh7aF0U9L6tHTZXM,33385
106
- biotite/sequence/align/cigar.py,sha256=HGHelQe2SH4SdKjcyTmVlvrlllFzDtpiysskFcclIW4,14285
107
- biotite/sequence/align/kmeralphabet.cpython-313-darwin.so,sha256=kLrrLfD43WgZhArcPc8aO6DBjbKiavcy4QcV-uwOZCM,401184
121
+ biotite/sequence/align/selector.cpython-313-darwin.so,sha256=qSOVepzmcd3eRsb565HLbg8o6w1xP8xsmIiu6gGwQbE,322528
122
+ biotite/sequence/align/localgapped.pyx,sha256=1uoooliEMravtH1fQJSth0a6FEM4La_v32wGP2C0RIQ,33106
123
+ biotite/sequence/align/cigar.py,sha256=ZhxnWSURuKMwOshbeNIK8mtt6r-xcFWXLzoLtluEo88,14335
124
+ biotite/sequence/align/kmeralphabet.cpython-313-darwin.so,sha256=HlahsN41BdU_f8MvM76IOO9oSEfdt04f1AQySRTXkTw,401184
108
125
  biotite/sequence/align/tracetable.pxd,sha256=_VP1ayP6FZL1Tzn1pCCbt6xPZDzFtE9bH0Gvop2lxyQ,2825
109
- biotite/sequence/align/kmertable.cpython-313-darwin.so,sha256=ib2r7CSXriD9FL5MpCjhEiJ9RA0aNS5WVJTvFAgojhI,683520
110
- biotite/sequence/align/kmertable.pyx,sha256=60fHpaQm21cTvvO6RepnzO43gouRyVEZ1nQu3oJHaAU,121697
126
+ biotite/sequence/align/kmertable.cpython-313-darwin.so,sha256=IkilJOFaEWbIwTRh2NcRvXlTM6Y0emxbX8VtMC3bdTA,683520
127
+ biotite/sequence/align/kmertable.pyx,sha256=EqLVngPURKux5tsrv5PauuN5hLKAJbDDVZWnVGWZufo,121697
111
128
  biotite/sequence/align/multiple.pyx,sha256=cUnbuAfYBp_Kt4Y7LeuPeuBiRdyu1D694i1kQIsUqPM,21965
112
- biotite/sequence/align/statistics.py,sha256=98Vaz__s_8GltcMwfErNuKQfXuFKZCq-i1XWkJ_iAMQ,9655
113
- biotite/sequence/align/banded.pyx,sha256=IoC59rBadaLdO3LFMoU6mHu7MX4Ri-PkMcd-sFHn2Po,25393
114
- biotite/sequence/align/kmersimilarity.cpython-313-darwin.so,sha256=k0qMBvx-BiLSLkB47n5bA4mFgimlL_snyfyCSstaL8M,229032
129
+ biotite/sequence/align/statistics.py,sha256=mtscAgqIZIdTjtsvjg4s2A6gzFex0QxyHxmcAxpBQww,9652
130
+ biotite/sequence/align/banded.pyx,sha256=DT9XvnQJ16uEgc2op5e3VgsjdtNmhXP01YqbapST_7A,25300
131
+ biotite/sequence/align/kmersimilarity.cpython-313-darwin.so,sha256=x7l9LHwmpKAcX-pZQ1M8O54-FKR-qMZHSaKKAVJ9QII,229032
115
132
  biotite/sequence/align/kmersimilarity.pyx,sha256=EBpz8R_fofRd4gsmBJLuH2qZgMWKlzQkCJ54w_-K7gQ,8433
116
- biotite/sequence/align/tracetable.cpython-313-darwin.so,sha256=cH9gJytzylO4fLZkvTi8_Q0Pm3Y35ClGoBtem4Jzh8U,202928
133
+ biotite/sequence/align/tracetable.cpython-313-darwin.so,sha256=-IzAlzimA-I2Wu4hWx0tNn0aMG8Tu1qDJL1fuzieDfU,202928
117
134
  biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
118
135
  biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
119
136
  biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
@@ -206,12 +223,12 @@ biotite/sequence/align/matrix_data/PAM340.mat,sha256=9rV5CU441SuU-MhTIOFBHbg2i6b
206
223
  biotite/sequence/align/matrix_data/PAM220.mat,sha256=58FW5l4TkLX5rUALdt0rrOXQWGqGlatGJjaZcN3HHYM,2067
207
224
  biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat,sha256=m3Es9ILTi5vCKAKjV40dLrJpZ8I0n7QaueKi0tNa1NI,1850
208
225
  biotite/sequence/align/matrix_data/PAM180.mat,sha256=mll_lIfL8oBzNlNcEhoh6ULv9lKG-HTBanUyJhzDO-U,2668
209
- biotite/sequence/graphics/alignment.py,sha256=WpTyskbya6x9ergwAKbTxQ-YxbxgfM2AwvPfw2E0FKs,39530
226
+ biotite/sequence/graphics/alignment.py,sha256=IvwMusuZ72eDPl-VDPQGmu1GMS3uo9xtPcvDgK8hsVQ,39368
210
227
  biotite/sequence/graphics/__init__.py,sha256=9o7zvUaCzuEhYzr1_dj1SID2EaQky2fSxVF7NkGoHC0,1152
211
- biotite/sequence/graphics/features.py,sha256=HzS434k_kKrd7hzCQlPeQH3_YQg3Y3fRx2k9n3LZ9FE,17295
228
+ biotite/sequence/graphics/features.py,sha256=SJ81q33R7ZJSaJiVMJoie2IjWXUydU0eWCy_E10vzdE,17297
212
229
  biotite/sequence/graphics/plasmid.py,sha256=_cP1pHLzWgS66UIhMSAuWD5JWP0SmBzWjPBJxHgR3Fc,26002
213
- biotite/sequence/graphics/dendrogram.py,sha256=11BkMkXQFCZY-OC2mTnhfiS53RLtH_Gz38tMYDAx-To,7592
214
- biotite/sequence/graphics/logo.py,sha256=6xhkspwu2Mbjo9aabw0gXgbcNqOdB9tw4IzPYMgzo0Y,3819
230
+ biotite/sequence/graphics/dendrogram.py,sha256=XKLFtUACA4rx0STLrQ8SCQAgK6EtFTxlnxNBEFT4Qw0,7670
231
+ biotite/sequence/graphics/logo.py,sha256=2VLuWyQpuwl6IyNhB39fgBmY2dT4Geh5fhpnwQ5TCNM,3692
215
232
  biotite/sequence/graphics/colorschemes.py,sha256=GvmyxoEyYFOFwK2zM_DXM8RPecEDGhalOVinR7BdQ_Q,5517
216
233
  biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json,sha256=FTwFLJ049NH4CFS0B5OaXtmySkE6yiluenixoNSaZSM,785
217
234
  biotite/sequence/graphics/color_schemes/rainbow_protein.json,sha256=C5imi4gVjtS0HVV6yQK3MOgNuOi1SPCnGDHiYqqbaU4,753
@@ -234,99 +251,102 @@ biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9
234
251
  biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
235
252
  biotite/sequence/graphics/color_schemes/3di_flower.json,sha256=wuo5hCVuc_wR9a5AviU9BXRQC8XUb90VqJCsKcpq8pc,917
236
253
  biotite/sequence/phylo/nj.pyx,sha256=s6hoo_7s3VFy-7Hgq9lKtUVXTZ-To8Dxwytk-ohfWYI,7281
237
- biotite/sequence/phylo/tree.cpython-313-darwin.so,sha256=9YDVU2e3M7TWwkrADKXSzi0eQl_5uGDXd4CWewMqRWY,281736
238
- biotite/sequence/phylo/upgma.cpython-313-darwin.so,sha256=Hcyx-V3w8ald4sj4rZPvT4JaRfyU94wUgY_oYEvVF2g,208808
254
+ biotite/sequence/phylo/tree.cpython-313-darwin.so,sha256=AvqxgDJtpbXJhwi7kdJI0VpHhqq1QtCFmzoPsS42Huc,281736
255
+ biotite/sequence/phylo/upgma.cpython-313-darwin.so,sha256=GvHLTV6s1kQRkaCELXFUUlgBpmJIJkAmiM-qrA6H-vQ,208808
239
256
  biotite/sequence/phylo/__init__.py,sha256=TW1CQqOa3JZYqidRy5XE8gA0HuzA8zo2Iouit3wSsBM,1261
240
257
  biotite/sequence/phylo/upgma.pyx,sha256=86QxGjj8fcGRhze7vZfqw8JLjLAZUevhkWDmzTy357E,5213
241
258
  biotite/sequence/phylo/tree.pyx,sha256=4e4Bhlm1qWY0Wvj6JqDE9jVwP6lEUmE8lIHEUmRNLwU,39206
242
- biotite/sequence/phylo/nj.cpython-313-darwin.so,sha256=p9AhngJNcM0uwjUQn5_fpCt2SkKE2sE2RYn2IAFwfVE,226888
243
- biotite/structure/repair.py,sha256=-1orK6q9tRNy36GWuS8_r4_goaGiaVtJy0I1VPCao2Q,6996
244
- biotite/structure/superimpose.py,sha256=MvPsab-ZRdeig_SoJH3XrrOY0VteTNCnLEKNSsar0_Y,25124
245
- biotite/structure/chains.py,sha256=I_A8JslWdBxi8cagoSGCfHddvHJ2WBSSe_WfovCwHxM,8827
246
- biotite/structure/bonds.cpython-313-darwin.so,sha256=xInuvgyD62UPTSxwmnbrofwgeukYGCVtJvHJgfTockE,559976
247
- biotite/structure/box.py,sha256=6iGaGbxnsoIRt_mq727yLqU1txz7PRpA2H458Xk00Uk,18598
259
+ biotite/sequence/phylo/nj.cpython-313-darwin.so,sha256=HqesAfCJKNxuSbqGghs-y03mtJqwAvnni3EBCOS1ReU,226888
260
+ biotite/structure/repair.py,sha256=EUvsV7EkJt-j7ruOnhZxhqdxfl7FMSKVzuQr7_xJE5g,6996
261
+ biotite/structure/superimpose.py,sha256=QiTG4N6g_Dov2PrNeXTb-MrqYkr-Th3GIFOJh-DzS5Y,25897
262
+ biotite/structure/chains.py,sha256=jvyZD9L55zwlnjpo_vBYFMtgQ1xSZnWxTpw3UApnbw4,8484
263
+ biotite/structure/bonds.cpython-313-darwin.so,sha256=JTZBLpZf_9uVuANqnGtIpl65F6xsbUT0y0u3_ks31Aw,560024
264
+ biotite/structure/box.py,sha256=n2x4AhNzrXMUn_kT8mKd1rr3_1aFlQdGi9GeGhwGaB0,18750
248
265
  biotite/structure/error.py,sha256=NI8oZfhO7oYWlcEIi025QZFD3Wjvwn6SvOn_RanrFT0,783
249
- biotite/structure/util.py,sha256=ywK8N5Po74uwTim2KuXOFIh5ivV0_pCc1W1oiZT_9sA,4956
250
- biotite/structure/segments.py,sha256=yXfzEd5X5OisJoC7m3_a0Qw4WmQErzrLlazByeATIus,5506
251
- biotite/structure/sequence.py,sha256=HLUaO32S_iDw2Ot1XEqQ7UtGDrxjCg30cCpzBqKpVPY,4246
252
- biotite/structure/sasa.pyx,sha256=fEUWuLtqjEmviPuL57lLuLdopndW-b7xtzvCr0vfQtk,12984
253
- biotite/structure/charges.cpython-313-darwin.so,sha256=vuktqKccfyth5ZsOsTuWwVIiskrUHORByahZGO09EV8,264304
254
- biotite/structure/__init__.py,sha256=VSJMdPML_2MJPcSnmfRCyAcIpFlJRN8MLrHpj7RqQQ4,5449
255
- biotite/structure/mechanics.py,sha256=1qzDJZ1U1T_KsxwKioYjtMTy9cGYRirtxKD5AcsaJ3E,2588
256
- biotite/structure/sse.py,sha256=MUdyNSaDvxGi_gaY9bQjUSVNm-W8B1oinJ-UFV7slwk,11406
266
+ biotite/structure/util.py,sha256=PvmoUJbB_PpqnTX0osuAs6e5V8AmeKjAVy3mFFZH288,4959
267
+ biotite/structure/segments.py,sha256=_uiFncD6qeyZeJc_8NLUPXRDazwv66jfpdGw_EkO0WU,7596
268
+ biotite/structure/sequence.py,sha256=TlJiSH1AC9XETl3G24UkKl1FHfpWh1aPKsdxj4ZdiEs,4245
269
+ biotite/structure/sasa.pyx,sha256=z6D7JOR70-moE3nNcJ1-EWsjORbicMB7Zvpacs512Ec,13110
270
+ biotite/structure/tm.py,sha256=HtG56CZI9fk3zjML5f5XJXcE7oKVtYS1r-HGm2ugawo,20967
271
+ biotite/structure/charges.cpython-313-darwin.so,sha256=nIQ-77N-7vMQYF0ZaYmuqYaoJc6wVBBqYrALn6mnGbQ,264304
272
+ biotite/structure/__init__.py,sha256=dqOp3qC1UU3AP7cxNus2wmtHLB9vB_D17Lhmd9cRxAM,5488
273
+ biotite/structure/mechanics.py,sha256=A7590nMLbsfp_pHvLukca_YV0Q6VcrfDRW_p58D8ZNY,2587
274
+ biotite/structure/sse.py,sha256=OHXohnYi4ipBcSas9XTi9Pm8oNasM49Oxr7DBvYbe1U,11404
257
275
  biotite/structure/charges.pyx,sha256=RpCz4sVOiwmZeVTcMAapiWJFVBPAK0gAAiNoNZuxZWA,18822
258
- biotite/structure/sasa.cpython-313-darwin.so,sha256=9xuBrf-bdx9yKYFvA4eOdM5MHOv_FTKwUxcmhOg7pD8,263592
259
- biotite/structure/density.py,sha256=BosyeB-0RGrANMpnq78A8cx_fYAOFnkcAJYxP8LKtZ0,4196
276
+ biotite/structure/sasa.cpython-313-darwin.so,sha256=8hnlSyf9e4rj8PP1lYksgwVBdnRXWYUjYX0bb0pDcW4,263592
277
+ biotite/structure/density.py,sha256=wGZFgqkK6Kdv0OzmmWz8eXPEVxPSFShxINWOOdehaIg,4197
260
278
  biotite/structure/rdf.py,sha256=Yf9PoWqSpNK3QsWqnCnOUBGL8WwKGOakgZ0pxj5UOiA,8104
261
- biotite/structure/transform.py,sha256=uz0t7-uv3QxJEd7oe8tpcnQPt5YfoFT6CLoruxEmvpA,19649
262
- biotite/structure/geometry.py,sha256=U7xtFwM6OTB0sjgyN3jhxPTXQn6_NmwW6ueNsdc6Zn4,23423
263
- biotite/structure/molecules.py,sha256=dQ1Ad7_rX8HRpEHfIhfLWq1-ydalpjwPEPHrEtDPBy4,15504
264
- biotite/structure/filter.py,sha256=X2Mj5_Z0_lk1LxuJudlztxuu7VkVF_ObtV_FCrXyHhg,17967
265
- biotite/structure/bonds.pyx,sha256=ILmU-8m_3yj_ZBMhMvS4Z5hl7hbugyDnzP20lnH6-sk,69546
266
- biotite/structure/atoms.py,sha256=ZcCvMUjBVGjdJuwqMrXXTjgZYQozWPRUPXvqnJyofao,50458
267
- biotite/structure/pseudoknots.py,sha256=hHxS4IOekR8ZqYFJvuXMexM1e1kaWmdqX18zfxAL4W0,22224
268
- biotite/structure/basepairs.py,sha256=2qxTgl6Q1zMjvZLa331hfQzbeMwrFzvSJYAfSETnwWo,49759
269
- biotite/structure/integrity.py,sha256=I2gcIgCoxWsC_adSsHYvbmvCz1aSeeXvIjt8uZWxYOM,6826
270
- biotite/structure/compare.py,sha256=vJLd5RKgMYrHCZiNExMfS1ceF4z8bRj9gazFkrUhIKk,9437
271
- biotite/structure/hbond.py,sha256=4y2FXeAXl7g2EDnwb1uDXFieGpZPQhnnkdATBechvW8,15218
272
- biotite/structure/celllist.cpython-313-darwin.so,sha256=IIN_fdDIed9rYKN4rUrfsPBC34GoYWPpUuaCqaOn8_A,302544
273
- biotite/structure/dotbracket.py,sha256=8S1DHu1-PRgeMHERztfOKggneVEcoUdwd0QNtcH3qI4,6834
274
- biotite/structure/residues.py,sha256=nYkbDjGYK6pFNJ0mZ1Hyb2ocmIOWLLnLyGi1tuhXxXk,22454
275
- biotite/structure/celllist.pyx,sha256=PCK5hx4QyuRrernfP_ty-w2ZRG5Qyn5dmibRwdVKXsE,34461
276
- biotite/structure/io/trajfile.py,sha256=vQehU2tsUnvK_y5VyAyBpQX9ec-MQrFjFr7X0tYM8tI,25184
279
+ biotite/structure/transform.py,sha256=lOXSdDhJSgMvU1Rs3yNztEOZ3ph-ntb5O2lkmck6DKc,19683
280
+ biotite/structure/geometry.py,sha256=7FtPNJtTUn691xw6kbVk90s8a9rAd98zC-rKD23ikdU,23676
281
+ biotite/structure/molecules.py,sha256=Ar4NF3r3VQwirFprTMItIdHeluMSlpKOpRanZ0EEsWI,15291
282
+ biotite/structure/filter.py,sha256=cXeTVhK2lbbHq9KA-lvu2-TKENtHWoI1Qc2hpFxR71Q,17995
283
+ biotite/structure/bonds.pyx,sha256=xho8dzXn40-1Qt0vbikeZsqYTNWfV4WOd17p_UbU6Ow,69759
284
+ biotite/structure/rings.py,sha256=elgOyclErHer-LXeWjE-xVcV12FHVnZeBFw1ixiz_ns,11446
285
+ biotite/structure/atoms.py,sha256=aavGBW5xIQlzpX_dgY-1jD7Z4LRIuSLRZBhMiZt6iq0,50844
286
+ biotite/structure/pseudoknots.py,sha256=yuVUH1YWgrAVHMPsDI3h-4Z0MgnQLWHikqqaDkf57U4,22167
287
+ biotite/structure/basepairs.py,sha256=cS0G7iiCbgnqLs2smZjqsS_Ffw2H7cvHiz57T4MfVos,50013
288
+ biotite/structure/integrity.py,sha256=-HaFg2ckyVgSyHEyHqqNQ8fOwnhVzieYsMgyTCdzCFo,6763
289
+ biotite/structure/compare.py,sha256=irYBGnJHpcX_ETFUVNzlgHQpeGy_ihUGw7EEhWbCcDc,27353
290
+ biotite/structure/hbond.py,sha256=d1-aBL6f8fTTpxcNFDWDE06E7Vi4mHvdkpx6SNOuIUc,15219
291
+ biotite/structure/celllist.cpython-313-darwin.so,sha256=lPEiLGXcnMMlgFkkAuTzCN2I_uNnmgPi1VHiqcOM8VM,319504
292
+ biotite/structure/dotbracket.py,sha256=asg6T2hO_kpAjfrCfgXLFyGbF6g8QQZRHcYG8I5ewyo,7262
293
+ biotite/structure/residues.py,sha256=p1dBgy0SbIzEEebhR0AZJmCES_5iiXQA-URduMhFBow,22337
294
+ biotite/structure/celllist.pyx,sha256=duKCnVnyYoFElEEF9D1AXW3AKyvYQer4JGocIh93MRY,34588
295
+ biotite/structure/io/util.py,sha256=ivgxUZI4-Muv4cC6cLQdkYyk0TRhcnHi7J5DIX95BmI,1016
296
+ biotite/structure/io/trajfile.py,sha256=FQGtW5d1BRQ0fgNN9ObUADPvP9shO6Ls8zJvSsaSZ-M,25397
277
297
  biotite/structure/io/__init__.py,sha256=Lxmd8x6lpWz8nA0QhXmrgjvD_mOP0KyGmEzsVGzxXX4,998
278
- biotite/structure/io/general.py,sha256=GknBtXTMUsxhEiBrnB1dxW5ndFDHXnXT39xAlNAEr_4,8448
298
+ biotite/structure/io/general.py,sha256=S826akJeJkLBSgApssIDP4OgHecz5FPI3pl5tQU11C4,8452
279
299
  biotite/structure/io/dcd/__init__.py,sha256=tYiiTSmqDrsSgg_sZaoQgx2D8N9OeqlooxH46-4-iaQ,388
280
300
  biotite/structure/io/dcd/file.py,sha256=jaU81fvGl4WG0zXB1dBKTOtSvFF3fS0kxeNR-wwpXlY,2224
281
301
  biotite/structure/io/trr/__init__.py,sha256=5WNHMGiHNNzYdoiybE6Cs0bYAcznS5D3ABu7gHDJ__A,359
282
302
  biotite/structure/io/trr/file.py,sha256=2LjaLoKYfNgyQGSEfQ1TdZQqaPyrBh3irbJdmEKFTMI,1235
283
- biotite/structure/io/pdbx/bcif.py,sha256=TU8qz07kSxPK1GRzZK_t-wdkS5KlnvN7kmIwZdgag9E,20638
284
- biotite/structure/io/pdbx/convert.py,sha256=HdgQpVRqE_q99IsjnAIbvL8PUE5dRt1PYscFmvBp6F8,65635
285
- biotite/structure/io/pdbx/encoding.cpython-313-darwin.so,sha256=LOgEiW6fWtmp4tpF-v7F7gAtmdbocDBwAhl2wIikiLU,1055456
303
+ biotite/structure/io/pdbx/bcif.py,sha256=k7WtZNB4U9czi00P1EpELZh8ty6cXRezll3yXdmiYOQ,21137
304
+ biotite/structure/io/pdbx/convert.py,sha256=HBeN_2wmX5yhNK3mptFOwxxiCs1lPEwYDHxgsRUNTAk,73394
305
+ biotite/structure/io/pdbx/encoding.cpython-313-darwin.so,sha256=zvFcJbU_XW1ZoDUazKg62Q7rZeTksD7V70zrRcZ17b8,1055456
286
306
  biotite/structure/io/pdbx/encoding.pyx,sha256=ySywnGIvlDER4tcQzFMEgWkQJN_sMzB__MHbRQ0-wxc,31184
287
307
  biotite/structure/io/pdbx/__init__.py,sha256=DlVXhrcuAF9A6Gim_JMccz-j8jDZuF2liDDA5cZxzx8,717
288
- biotite/structure/io/pdbx/compress.py,sha256=-v-lpJDxeEyYtXK3tGwQFwqm73355ZocT4U6L1bZcmk,11800
289
- biotite/structure/io/pdbx/cif.py,sha256=va3C2ANDFSuyY72gWWboY9TPUA1DlTB3zjQVeV80b2A,34506
290
- biotite/structure/io/pdbx/component.py,sha256=L07unwDqSrNtlCAYSjTbm3Ve8rLt_rT3K2f2-zUNP_o,8240
308
+ biotite/structure/io/pdbx/compress.py,sha256=2ut2xFL34f2dcWoYkNMmBMlrDzkqnvygxYLHL9JvuVs,11800
309
+ biotite/structure/io/pdbx/cif.py,sha256=nTlgtU78Mb7IjEebwW-XuOAgEz9z5rAjD7A32IaEQek,34868
310
+ biotite/structure/io/pdbx/component.py,sha256=xnVVqpbBAj8ED4SCYx1tF6jHXCRVK8NWHcoG-fH7QVg,8398
291
311
  biotite/structure/io/xtc/__init__.py,sha256=ipZjsWBil-h2ujdlEobyI2jGy5xsfRVOPAyCsYAJ7G4,357
292
312
  biotite/structure/io/xtc/file.py,sha256=PknO2-xzLgKTBW5Gig5Hv1HUZ4BIHRf2con2MLxEwNU,1235
293
313
  biotite/structure/io/pdbqt/convert.py,sha256=xF4m-tZG_4ykhZsknqUivFXbb6VqLXVLwmhi1AbOmuw,4008
294
314
  biotite/structure/io/pdbqt/__init__.py,sha256=a0_uIzhzCHdLBMdXhb5KEhbyRSURmqYXNwdjnJ6LAbY,441
295
- biotite/structure/io/pdbqt/file.py,sha256=XpEnIs1gW2E_r4Udnvadevo6x0ii-JmgBHnhoTFKj5g,26633
315
+ biotite/structure/io/pdbqt/file.py,sha256=Yvg_1g9EM7UHCoBKuzHSbWI61axEqg4_l8W3ZeI9aH4,26638
296
316
  biotite/structure/io/netcdf/__init__.py,sha256=SX8u2Eu99PXiP0kvHJ4mMCXTy68wV-ptcFdYn9DzEVk,350
297
317
  biotite/structure/io/netcdf/file.py,sha256=m5POlwjX0y28FjrK3lCglX9JD9r6iVuHJlQgJNZNStI,2192
298
318
  biotite/structure/io/gro/__init__.py,sha256=tEKrIlgahoBJXvrwtmZ1yVSOE8QW8GS6lk7MHwE2Cso,408
299
- biotite/structure/io/gro/file.py,sha256=vXNpc2aQVEggW8KwmkbouawWxaeOEKamDtYqS4kMhSo,12732
319
+ biotite/structure/io/gro/file.py,sha256=X5ubDEyNvbLbyzrsGsi9qylGanyvyzdC3t95KQu2xlE,12740
300
320
  biotite/structure/io/mol/header.py,sha256=AbYKcqGsnPiTf1nH-bbIg97A4RClPeJwFk4IleW5Duk,3425
301
- biotite/structure/io/mol/convert.py,sha256=sj7V7pdBlGQAAaXl7fAVf8JZC4Fd-z0gjne_0fYjyH4,3789
321
+ biotite/structure/io/mol/convert.py,sha256=jTw6O7S9nOcbF871Wwu7M_BHrOtBIe4PuqovdGL0-os,3789
302
322
  biotite/structure/io/mol/__init__.py,sha256=WvcNPDdf9W1zPyJ0tjTvGNxA83ht18uRQA8BF4s7Wno,582
303
- biotite/structure/io/mol/ctab.py,sha256=r6Ryx3ZBhlxm88PWVOWGwxrgPow95DLEAcIf8N2mkGU,13470
304
- biotite/structure/io/mol/mol.py,sha256=Eterau_ZfXbIkFHpDTvWzM2Yxxmem2hZn1tOQkXNuqM,5461
305
- biotite/structure/io/mol/sdf.py,sha256=bAfypU7QBrP4DhHDf9Qi5eKGHU_bjC4Ox0xHSlYuPxQ,32314
306
- biotite/structure/io/pdb/convert.py,sha256=xuodAbfXe3BOuETPhV0x3D1ogJwaba9KFXr4mWuzNqo,10720
307
- biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so,sha256=9SK75pQZ4PJA0hoha7UO71TXTYyWGFGLMvLdOZs4xj8,209344
323
+ biotite/structure/io/mol/ctab.py,sha256=yWhR81XMuWKrO3DVFG6hRgnvjOYQ7ituGTW7EnfDchs,14120
324
+ biotite/structure/io/mol/mol.py,sha256=qp_yQ6tUIMmJNjzCqtle92mw_VJm4hkS0TRRJxAegS0,5461
325
+ biotite/structure/io/mol/sdf.py,sha256=09GRt6OGdsWH-ccgR8tXVvDM6pCUhnsZdPRv9Dx_QQU,32975
326
+ biotite/structure/io/pdb/convert.py,sha256=uiTLwWkXvc1VpGaHe-yRon4DpM0ZQh0ngEyU0whdvJU,10720
327
+ biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so,sha256=tPlSPmM0QMiOIOlXtsgurU96i88GuJdYbA_0tZgFYFQ,209344
308
328
  biotite/structure/io/pdb/__init__.py,sha256=5NbUMDRKIe7jJ2ByRHpMhJzY_vIasjSgO63Zxrpq8BM,733
309
- biotite/structure/io/pdb/file.py,sha256=Qk5oX4mPh7WDF6XS0Fy8BVrhHRtQ-Ro8llpT_W41QZY,50538
329
+ biotite/structure/io/pdb/file.py,sha256=27FCuvPzidmwf5tSRAtXfUTUbptKu-IHRvi-67Ld40E,50354
310
330
  biotite/structure/io/pdb/hybrid36.pyx,sha256=BKV7oh0xrrjqVrkhTn7KEolon57fUhlG4Yf0Tf22wuU,8036
311
- biotite/structure/alphabet/pb.py,sha256=gtGuWDpMhJUkVUO30GHhlgNhwwzycGkkGNykw32FUjU,5995
312
- biotite/structure/alphabet/unkerasify.py,sha256=Ri7rAxBDG7_xlddpReBJkNZrl5ues3_bygpC2gDb3XY,3201
331
+ biotite/structure/alphabet/pb.py,sha256=ksJKkYj4y3jzfvgFUF7g99W981RvH46RXKe3RW5fkR8,5994
332
+ biotite/structure/alphabet/unkerasify.py,sha256=P-EY9gbWglJHPF9xp_SivF67bIQE73403htyJMu4-nE,3301
313
333
  biotite/structure/alphabet/encoder_weights_3di.kerasify,sha256=m4JF4oVWBbiu6r8DM9ONQ5Bmcbqwr5dxKfqYThOmHpk,1032
314
334
  biotite/structure/alphabet/__init__.py,sha256=tUAybrggScCsom1b_EXQ63pA88L_PmQpcYS-MnqKavM,928
315
335
  biotite/structure/alphabet/encoder.py,sha256=2BWLMdGBr2bHw09vMhbzPztMKSnVt8UhUf85g5M1xnY,11383
316
- biotite/structure/alphabet/i3d.py,sha256=eIcm3l0GLkjxm17bykrfwtKpS5AYDAsDiChLOyMVCu0,3010
336
+ biotite/structure/alphabet/i3d.py,sha256=SLJkVWiKl-EXMcsv8gcKF4zujoR5L8sQRyo9fnrETPM,3009
317
337
  biotite/structure/alphabet/pb.license,sha256=OkDCfXO06BfooLXYC3iF7LXXB_Uqqex1B2gjUEFdUZI,1091
318
338
  biotite/structure/alphabet/layers.py,sha256=Y1Y8G2LqqzC7M0kNUv8k-EXTVVKGLnPDJKdRrVEf3H4,2087
319
- biotite/structure/info/components.bcif,sha256=wwalqJIJBcRDT7wXyzWbn89uSsum-4Ah87ImtfpDMVE,57915331
320
- biotite/structure/info/misc.py,sha256=rfNLLm21FPq-Ugpf3J8tX77fxkQsotZbOY-_vbWmGP0,3429
339
+ biotite/structure/info/components.bcif,sha256=ClKq5vYpizeAB7JSaz-ZnZ_rby7mVVn3MS5bv8muoqU,59077222
340
+ biotite/structure/info/misc.py,sha256=hAvTh8KdkPGsh9Y2mGxDRRt9ZDPgCoAGLHr1smCANlg,3428
321
341
  biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
322
342
  biotite/structure/info/__init__.py,sha256=k08kdsKlrxaVQ9x8MjEXoVFaXl1J8OcpLf6iG7dUgOY,698
323
- biotite/structure/info/groups.py,sha256=dX9kK5KGyLvH38-5L7y_oaaI1poR2FIARrzfBXGSwPQ,3187
324
- biotite/structure/info/radii.py,sha256=sNbJZz1AU9DBkImwRwwtWZEH_A3CFow5Hsx1D-U3_Bw,5610
325
- biotite/structure/info/standardize.py,sha256=hWsxKSo7xdiGRyOoQcay0mslPTtb9cQuQds5IsWG8Xg,7759
343
+ biotite/structure/info/groups.py,sha256=f3kSytTRMgP57zVd_Qa8Yddvu-ZUfeVcVTxmRCmQBhY,3184
344
+ biotite/structure/info/radii.py,sha256=PGpl5WoaFBzAktxNodzb_mCz8jp0AwW3GNXk9jKN3Ho,7281
345
+ biotite/structure/info/standardize.py,sha256=UEvlRB9XDPO0S4usROlSl51DjuadrTslFBp2jqcMqEw,7739
326
346
  biotite/structure/info/bonds.py,sha256=6pXAZPeKPL2pwFi5fhSyTwh_gd5fToIgvwguGffrE-0,4644
327
347
  biotite/structure/info/masses.py,sha256=HOdaeFZkd5LSrl00025S1MwXT7im8V-s0bU54tr1te8,4555
328
- biotite/structure/info/atoms.py,sha256=RniEQ9e_ocMV3sPdpTokm4s-V8A49n0W0ZsYoEv4YVI,2622
329
- biotite/structure/info/ccd.py,sha256=EBSqvzgIXl7U5wxSVOFPSaLQLBRP2E_mUVXEwsRyOO4,5853
348
+ biotite/structure/info/atoms.py,sha256=9uytsei3Y4zxExhnda4y4vuxmIO6gOndJYeXroC86yU,3010
349
+ biotite/structure/info/ccd.py,sha256=A3-YomYJS3bbAfntLpvwLkmCgQFjR2suMwFnGQsgPXg,5851
330
350
  biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
331
351
  biotite/structure/graphics/rna.py,sha256=w7zFMKo2ZZ4n60SkbkupEXPxe3-KUNa261PF784ry8k,12016
332
352
  biotite/structure/graphics/atoms.py,sha256=988_URX4hfTE3oBOYgAvZruOrzogMPcFKiTT5RJL01E,8116