biotite 1.1.0__cp313-cp313-macosx_10_13_x86_64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of biotite might be problematic. Click here for more details.

Files changed (332) hide show
  1. biotite/__init__.py +18 -0
  2. biotite/application/__init__.py +69 -0
  3. biotite/application/application.py +276 -0
  4. biotite/application/autodock/__init__.py +12 -0
  5. biotite/application/autodock/app.py +500 -0
  6. biotite/application/blast/__init__.py +14 -0
  7. biotite/application/blast/alignment.py +92 -0
  8. biotite/application/blast/webapp.py +428 -0
  9. biotite/application/clustalo/__init__.py +12 -0
  10. biotite/application/clustalo/app.py +223 -0
  11. biotite/application/dssp/__init__.py +12 -0
  12. biotite/application/dssp/app.py +159 -0
  13. biotite/application/localapp.py +342 -0
  14. biotite/application/mafft/__init__.py +12 -0
  15. biotite/application/mafft/app.py +116 -0
  16. biotite/application/msaapp.py +363 -0
  17. biotite/application/muscle/__init__.py +13 -0
  18. biotite/application/muscle/app3.py +227 -0
  19. biotite/application/muscle/app5.py +163 -0
  20. biotite/application/sra/__init__.py +18 -0
  21. biotite/application/sra/app.py +452 -0
  22. biotite/application/tantan/__init__.py +12 -0
  23. biotite/application/tantan/app.py +199 -0
  24. biotite/application/util.py +57 -0
  25. biotite/application/viennarna/__init__.py +18 -0
  26. biotite/application/viennarna/rnaalifold.py +310 -0
  27. biotite/application/viennarna/rnafold.py +254 -0
  28. biotite/application/viennarna/rnaplot.py +206 -0
  29. biotite/application/viennarna/util.py +77 -0
  30. biotite/application/webapp.py +76 -0
  31. biotite/copyable.py +71 -0
  32. biotite/database/__init__.py +23 -0
  33. biotite/database/entrez/__init__.py +15 -0
  34. biotite/database/entrez/check.py +60 -0
  35. biotite/database/entrez/dbnames.py +91 -0
  36. biotite/database/entrez/download.py +229 -0
  37. biotite/database/entrez/key.py +44 -0
  38. biotite/database/entrez/query.py +262 -0
  39. biotite/database/error.py +16 -0
  40. biotite/database/pubchem/__init__.py +21 -0
  41. biotite/database/pubchem/download.py +258 -0
  42. biotite/database/pubchem/error.py +20 -0
  43. biotite/database/pubchem/query.py +830 -0
  44. biotite/database/pubchem/throttle.py +98 -0
  45. biotite/database/rcsb/__init__.py +13 -0
  46. biotite/database/rcsb/download.py +159 -0
  47. biotite/database/rcsb/query.py +964 -0
  48. biotite/database/uniprot/__init__.py +13 -0
  49. biotite/database/uniprot/check.py +40 -0
  50. biotite/database/uniprot/download.py +129 -0
  51. biotite/database/uniprot/query.py +293 -0
  52. biotite/file.py +232 -0
  53. biotite/sequence/__init__.py +84 -0
  54. biotite/sequence/align/__init__.py +203 -0
  55. biotite/sequence/align/alignment.py +680 -0
  56. biotite/sequence/align/banded.cpython-313-darwin.so +0 -0
  57. biotite/sequence/align/banded.pyx +652 -0
  58. biotite/sequence/align/buckets.py +71 -0
  59. biotite/sequence/align/cigar.py +425 -0
  60. biotite/sequence/align/kmeralphabet.cpython-313-darwin.so +0 -0
  61. biotite/sequence/align/kmeralphabet.pyx +595 -0
  62. biotite/sequence/align/kmersimilarity.cpython-313-darwin.so +0 -0
  63. biotite/sequence/align/kmersimilarity.pyx +233 -0
  64. biotite/sequence/align/kmertable.cpython-313-darwin.so +0 -0
  65. biotite/sequence/align/kmertable.pyx +3411 -0
  66. biotite/sequence/align/localgapped.cpython-313-darwin.so +0 -0
  67. biotite/sequence/align/localgapped.pyx +892 -0
  68. biotite/sequence/align/localungapped.cpython-313-darwin.so +0 -0
  69. biotite/sequence/align/localungapped.pyx +279 -0
  70. biotite/sequence/align/matrix.py +622 -0
  71. biotite/sequence/align/matrix_data/3Di.mat +24 -0
  72. biotite/sequence/align/matrix_data/BLOSUM100.mat +31 -0
  73. biotite/sequence/align/matrix_data/BLOSUM30.mat +31 -0
  74. biotite/sequence/align/matrix_data/BLOSUM35.mat +31 -0
  75. biotite/sequence/align/matrix_data/BLOSUM40.mat +31 -0
  76. biotite/sequence/align/matrix_data/BLOSUM45.mat +31 -0
  77. biotite/sequence/align/matrix_data/BLOSUM50.mat +31 -0
  78. biotite/sequence/align/matrix_data/BLOSUM50_13p.mat +25 -0
  79. biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat +25 -0
  80. biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat +25 -0
  81. biotite/sequence/align/matrix_data/BLOSUM55.mat +31 -0
  82. biotite/sequence/align/matrix_data/BLOSUM60.mat +31 -0
  83. biotite/sequence/align/matrix_data/BLOSUM62.mat +31 -0
  84. biotite/sequence/align/matrix_data/BLOSUM62_13p.mat +25 -0
  85. biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat +25 -0
  86. biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat +25 -0
  87. biotite/sequence/align/matrix_data/BLOSUM65.mat +31 -0
  88. biotite/sequence/align/matrix_data/BLOSUM70.mat +31 -0
  89. biotite/sequence/align/matrix_data/BLOSUM75.mat +31 -0
  90. biotite/sequence/align/matrix_data/BLOSUM80.mat +31 -0
  91. biotite/sequence/align/matrix_data/BLOSUM85.mat +31 -0
  92. biotite/sequence/align/matrix_data/BLOSUM90.mat +31 -0
  93. biotite/sequence/align/matrix_data/BLOSUMN.mat +31 -0
  94. biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat +25 -0
  95. biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat +25 -0
  96. biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat +25 -0
  97. biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat +25 -0
  98. biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat +25 -0
  99. biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat +25 -0
  100. biotite/sequence/align/matrix_data/DAYHOFF.mat +32 -0
  101. biotite/sequence/align/matrix_data/GONNET.mat +26 -0
  102. biotite/sequence/align/matrix_data/IDENTITY.mat +25 -0
  103. biotite/sequence/align/matrix_data/MATCH.mat +25 -0
  104. biotite/sequence/align/matrix_data/NUC.mat +25 -0
  105. biotite/sequence/align/matrix_data/PAM10.mat +34 -0
  106. biotite/sequence/align/matrix_data/PAM100.mat +34 -0
  107. biotite/sequence/align/matrix_data/PAM110.mat +34 -0
  108. biotite/sequence/align/matrix_data/PAM120.mat +34 -0
  109. biotite/sequence/align/matrix_data/PAM130.mat +34 -0
  110. biotite/sequence/align/matrix_data/PAM140.mat +34 -0
  111. biotite/sequence/align/matrix_data/PAM150.mat +34 -0
  112. biotite/sequence/align/matrix_data/PAM160.mat +34 -0
  113. biotite/sequence/align/matrix_data/PAM170.mat +34 -0
  114. biotite/sequence/align/matrix_data/PAM180.mat +34 -0
  115. biotite/sequence/align/matrix_data/PAM190.mat +34 -0
  116. biotite/sequence/align/matrix_data/PAM20.mat +34 -0
  117. biotite/sequence/align/matrix_data/PAM200.mat +34 -0
  118. biotite/sequence/align/matrix_data/PAM210.mat +34 -0
  119. biotite/sequence/align/matrix_data/PAM220.mat +34 -0
  120. biotite/sequence/align/matrix_data/PAM230.mat +34 -0
  121. biotite/sequence/align/matrix_data/PAM240.mat +34 -0
  122. biotite/sequence/align/matrix_data/PAM250.mat +34 -0
  123. biotite/sequence/align/matrix_data/PAM260.mat +34 -0
  124. biotite/sequence/align/matrix_data/PAM270.mat +34 -0
  125. biotite/sequence/align/matrix_data/PAM280.mat +34 -0
  126. biotite/sequence/align/matrix_data/PAM290.mat +34 -0
  127. biotite/sequence/align/matrix_data/PAM30.mat +34 -0
  128. biotite/sequence/align/matrix_data/PAM300.mat +34 -0
  129. biotite/sequence/align/matrix_data/PAM310.mat +34 -0
  130. biotite/sequence/align/matrix_data/PAM320.mat +34 -0
  131. biotite/sequence/align/matrix_data/PAM330.mat +34 -0
  132. biotite/sequence/align/matrix_data/PAM340.mat +34 -0
  133. biotite/sequence/align/matrix_data/PAM350.mat +34 -0
  134. biotite/sequence/align/matrix_data/PAM360.mat +34 -0
  135. biotite/sequence/align/matrix_data/PAM370.mat +34 -0
  136. biotite/sequence/align/matrix_data/PAM380.mat +34 -0
  137. biotite/sequence/align/matrix_data/PAM390.mat +34 -0
  138. biotite/sequence/align/matrix_data/PAM40.mat +34 -0
  139. biotite/sequence/align/matrix_data/PAM400.mat +34 -0
  140. biotite/sequence/align/matrix_data/PAM410.mat +34 -0
  141. biotite/sequence/align/matrix_data/PAM420.mat +34 -0
  142. biotite/sequence/align/matrix_data/PAM430.mat +34 -0
  143. biotite/sequence/align/matrix_data/PAM440.mat +34 -0
  144. biotite/sequence/align/matrix_data/PAM450.mat +34 -0
  145. biotite/sequence/align/matrix_data/PAM460.mat +34 -0
  146. biotite/sequence/align/matrix_data/PAM470.mat +34 -0
  147. biotite/sequence/align/matrix_data/PAM480.mat +34 -0
  148. biotite/sequence/align/matrix_data/PAM490.mat +34 -0
  149. biotite/sequence/align/matrix_data/PAM50.mat +34 -0
  150. biotite/sequence/align/matrix_data/PAM500.mat +34 -0
  151. biotite/sequence/align/matrix_data/PAM60.mat +34 -0
  152. biotite/sequence/align/matrix_data/PAM70.mat +34 -0
  153. biotite/sequence/align/matrix_data/PAM80.mat +34 -0
  154. biotite/sequence/align/matrix_data/PAM90.mat +34 -0
  155. biotite/sequence/align/matrix_data/PB.license +21 -0
  156. biotite/sequence/align/matrix_data/PB.mat +18 -0
  157. biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat +25 -0
  158. biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat +25 -0
  159. biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat +25 -0
  160. biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat +25 -0
  161. biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat +25 -0
  162. biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat +25 -0
  163. biotite/sequence/align/multiple.cpython-313-darwin.so +0 -0
  164. biotite/sequence/align/multiple.pyx +620 -0
  165. biotite/sequence/align/pairwise.cpython-313-darwin.so +0 -0
  166. biotite/sequence/align/pairwise.pyx +587 -0
  167. biotite/sequence/align/permutation.cpython-313-darwin.so +0 -0
  168. biotite/sequence/align/permutation.pyx +313 -0
  169. biotite/sequence/align/primes.txt +821 -0
  170. biotite/sequence/align/selector.cpython-313-darwin.so +0 -0
  171. biotite/sequence/align/selector.pyx +954 -0
  172. biotite/sequence/align/statistics.py +264 -0
  173. biotite/sequence/align/tracetable.cpython-313-darwin.so +0 -0
  174. biotite/sequence/align/tracetable.pxd +64 -0
  175. biotite/sequence/align/tracetable.pyx +370 -0
  176. biotite/sequence/alphabet.py +555 -0
  177. biotite/sequence/annotation.py +830 -0
  178. biotite/sequence/codec.cpython-313-darwin.so +0 -0
  179. biotite/sequence/codec.pyx +155 -0
  180. biotite/sequence/codon.py +477 -0
  181. biotite/sequence/codon_tables.txt +202 -0
  182. biotite/sequence/graphics/__init__.py +33 -0
  183. biotite/sequence/graphics/alignment.py +1115 -0
  184. biotite/sequence/graphics/color_schemes/3di_flower.json +48 -0
  185. biotite/sequence/graphics/color_schemes/autumn.json +51 -0
  186. biotite/sequence/graphics/color_schemes/blossom.json +51 -0
  187. biotite/sequence/graphics/color_schemes/clustalx_dna.json +11 -0
  188. biotite/sequence/graphics/color_schemes/clustalx_protein.json +28 -0
  189. biotite/sequence/graphics/color_schemes/flower.json +51 -0
  190. biotite/sequence/graphics/color_schemes/jalview_buried.json +31 -0
  191. biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json +31 -0
  192. biotite/sequence/graphics/color_schemes/jalview_prop_helix.json +31 -0
  193. biotite/sequence/graphics/color_schemes/jalview_prop_strand.json +31 -0
  194. biotite/sequence/graphics/color_schemes/jalview_prop_turn.json +31 -0
  195. biotite/sequence/graphics/color_schemes/jalview_taylor.json +28 -0
  196. biotite/sequence/graphics/color_schemes/jalview_zappo.json +28 -0
  197. biotite/sequence/graphics/color_schemes/ocean.json +51 -0
  198. biotite/sequence/graphics/color_schemes/pb_flower.json +40 -0
  199. biotite/sequence/graphics/color_schemes/rainbow_dna.json +11 -0
  200. biotite/sequence/graphics/color_schemes/rainbow_protein.json +30 -0
  201. biotite/sequence/graphics/color_schemes/spring.json +51 -0
  202. biotite/sequence/graphics/color_schemes/sunset.json +51 -0
  203. biotite/sequence/graphics/color_schemes/wither.json +51 -0
  204. biotite/sequence/graphics/colorschemes.py +170 -0
  205. biotite/sequence/graphics/dendrogram.py +229 -0
  206. biotite/sequence/graphics/features.py +544 -0
  207. biotite/sequence/graphics/logo.py +104 -0
  208. biotite/sequence/graphics/plasmid.py +712 -0
  209. biotite/sequence/io/__init__.py +12 -0
  210. biotite/sequence/io/fasta/__init__.py +22 -0
  211. biotite/sequence/io/fasta/convert.py +284 -0
  212. biotite/sequence/io/fasta/file.py +265 -0
  213. biotite/sequence/io/fastq/__init__.py +19 -0
  214. biotite/sequence/io/fastq/convert.py +117 -0
  215. biotite/sequence/io/fastq/file.py +507 -0
  216. biotite/sequence/io/genbank/__init__.py +17 -0
  217. biotite/sequence/io/genbank/annotation.py +269 -0
  218. biotite/sequence/io/genbank/file.py +573 -0
  219. biotite/sequence/io/genbank/metadata.py +336 -0
  220. biotite/sequence/io/genbank/sequence.py +171 -0
  221. biotite/sequence/io/general.py +201 -0
  222. biotite/sequence/io/gff/__init__.py +26 -0
  223. biotite/sequence/io/gff/convert.py +128 -0
  224. biotite/sequence/io/gff/file.py +450 -0
  225. biotite/sequence/phylo/__init__.py +36 -0
  226. biotite/sequence/phylo/nj.cpython-313-darwin.so +0 -0
  227. biotite/sequence/phylo/nj.pyx +221 -0
  228. biotite/sequence/phylo/tree.cpython-313-darwin.so +0 -0
  229. biotite/sequence/phylo/tree.pyx +1169 -0
  230. biotite/sequence/phylo/upgma.cpython-313-darwin.so +0 -0
  231. biotite/sequence/phylo/upgma.pyx +164 -0
  232. biotite/sequence/profile.py +567 -0
  233. biotite/sequence/search.py +118 -0
  234. biotite/sequence/seqtypes.py +713 -0
  235. biotite/sequence/sequence.py +374 -0
  236. biotite/setup_ccd.py +197 -0
  237. biotite/structure/__init__.py +133 -0
  238. biotite/structure/alphabet/__init__.py +25 -0
  239. biotite/structure/alphabet/encoder.py +332 -0
  240. biotite/structure/alphabet/encoder_weights_3di.kerasify +0 -0
  241. biotite/structure/alphabet/i3d.py +110 -0
  242. biotite/structure/alphabet/layers.py +86 -0
  243. biotite/structure/alphabet/pb.license +21 -0
  244. biotite/structure/alphabet/pb.py +171 -0
  245. biotite/structure/alphabet/unkerasify.py +122 -0
  246. biotite/structure/atoms.py +1554 -0
  247. biotite/structure/basepairs.py +1404 -0
  248. biotite/structure/bonds.cpython-313-darwin.so +0 -0
  249. biotite/structure/bonds.pyx +1972 -0
  250. biotite/structure/box.py +588 -0
  251. biotite/structure/celllist.cpython-313-darwin.so +0 -0
  252. biotite/structure/celllist.pyx +849 -0
  253. biotite/structure/chains.py +314 -0
  254. biotite/structure/charges.cpython-313-darwin.so +0 -0
  255. biotite/structure/charges.pyx +520 -0
  256. biotite/structure/compare.py +274 -0
  257. biotite/structure/density.py +109 -0
  258. biotite/structure/dotbracket.py +214 -0
  259. biotite/structure/error.py +39 -0
  260. biotite/structure/filter.py +590 -0
  261. biotite/structure/geometry.py +655 -0
  262. biotite/structure/graphics/__init__.py +13 -0
  263. biotite/structure/graphics/atoms.py +243 -0
  264. biotite/structure/graphics/rna.py +295 -0
  265. biotite/structure/hbond.py +428 -0
  266. biotite/structure/info/__init__.py +24 -0
  267. biotite/structure/info/atom_masses.json +121 -0
  268. biotite/structure/info/atoms.py +81 -0
  269. biotite/structure/info/bonds.py +149 -0
  270. biotite/structure/info/ccd.py +202 -0
  271. biotite/structure/info/components.bcif +0 -0
  272. biotite/structure/info/groups.py +131 -0
  273. biotite/structure/info/masses.py +121 -0
  274. biotite/structure/info/misc.py +138 -0
  275. biotite/structure/info/radii.py +197 -0
  276. biotite/structure/info/standardize.py +186 -0
  277. biotite/structure/integrity.py +215 -0
  278. biotite/structure/io/__init__.py +29 -0
  279. biotite/structure/io/dcd/__init__.py +13 -0
  280. biotite/structure/io/dcd/file.py +67 -0
  281. biotite/structure/io/general.py +243 -0
  282. biotite/structure/io/gro/__init__.py +14 -0
  283. biotite/structure/io/gro/file.py +344 -0
  284. biotite/structure/io/mol/__init__.py +20 -0
  285. biotite/structure/io/mol/convert.py +112 -0
  286. biotite/structure/io/mol/ctab.py +415 -0
  287. biotite/structure/io/mol/header.py +120 -0
  288. biotite/structure/io/mol/mol.py +149 -0
  289. biotite/structure/io/mol/sdf.py +914 -0
  290. biotite/structure/io/netcdf/__init__.py +13 -0
  291. biotite/structure/io/netcdf/file.py +64 -0
  292. biotite/structure/io/pdb/__init__.py +20 -0
  293. biotite/structure/io/pdb/convert.py +307 -0
  294. biotite/structure/io/pdb/file.py +1290 -0
  295. biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so +0 -0
  296. biotite/structure/io/pdb/hybrid36.pyx +242 -0
  297. biotite/structure/io/pdbqt/__init__.py +15 -0
  298. biotite/structure/io/pdbqt/convert.py +113 -0
  299. biotite/structure/io/pdbqt/file.py +688 -0
  300. biotite/structure/io/pdbx/__init__.py +23 -0
  301. biotite/structure/io/pdbx/bcif.py +656 -0
  302. biotite/structure/io/pdbx/cif.py +1075 -0
  303. biotite/structure/io/pdbx/component.py +245 -0
  304. biotite/structure/io/pdbx/compress.py +321 -0
  305. biotite/structure/io/pdbx/convert.py +1745 -0
  306. biotite/structure/io/pdbx/encoding.cpython-313-darwin.so +0 -0
  307. biotite/structure/io/pdbx/encoding.pyx +1031 -0
  308. biotite/structure/io/trajfile.py +693 -0
  309. biotite/structure/io/trr/__init__.py +13 -0
  310. biotite/structure/io/trr/file.py +43 -0
  311. biotite/structure/io/xtc/__init__.py +13 -0
  312. biotite/structure/io/xtc/file.py +43 -0
  313. biotite/structure/mechanics.py +73 -0
  314. biotite/structure/molecules.py +352 -0
  315. biotite/structure/pseudoknots.py +628 -0
  316. biotite/structure/rdf.py +245 -0
  317. biotite/structure/repair.py +304 -0
  318. biotite/structure/residues.py +572 -0
  319. biotite/structure/sasa.cpython-313-darwin.so +0 -0
  320. biotite/structure/sasa.pyx +322 -0
  321. biotite/structure/segments.py +178 -0
  322. biotite/structure/sequence.py +111 -0
  323. biotite/structure/sse.py +308 -0
  324. biotite/structure/superimpose.py +689 -0
  325. biotite/structure/transform.py +530 -0
  326. biotite/structure/util.py +168 -0
  327. biotite/version.py +16 -0
  328. biotite/visualize.py +265 -0
  329. biotite-1.1.0.dist-info/METADATA +190 -0
  330. biotite-1.1.0.dist-info/RECORD +332 -0
  331. biotite-1.1.0.dist-info/WHEEL +4 -0
  332. biotite-1.1.0.dist-info/licenses/LICENSE.rst +30 -0
@@ -0,0 +1,332 @@
1
+ biotite-1.1.0.dist-info/RECORD,,
2
+ biotite-1.1.0.dist-info/WHEEL,sha256=Gw8Kfz95VphIIRy9YvRBS3CNdWZbdmlfDrvOnoM2DbM,107
3
+ biotite-1.1.0.dist-info/METADATA,sha256=AWoJEvD_xouBG2_P5lKh-FPZOZQ9C12cRsO8GsBMBfE,7224
4
+ biotite-1.1.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
5
+ biotite/version.py,sha256=CqDGE4B1ZqZ-56mxeOFcXRTmlxrdOh4ayrjbcPjziE4,411
6
+ biotite/copyable.py,sha256=C7ycTQxqanxT0SmXhzy5OLp7NpZdNWHyokozdoVDGNA,1897
7
+ biotite/__init__.py,sha256=rL8ZyaCUjOrECEvRxyHj8MOMp4FHMJ8n6KKgrYf5OAQ,545
8
+ biotite/visualize.py,sha256=EYUBKgeNrkPI53f7L4T893NMmLWgBp07aO2XFcdpYTU,10012
9
+ biotite/file.py,sha256=TQLcN1FzEbEEOLdR0RUfHr9WPIkmULifHG_LoEWZV3w,6524
10
+ biotite/setup_ccd.py,sha256=sWHyRm78imJybCzPu_W-gKR_itxrVwEEGJxMq6YlzIE,6051
11
+ biotite/database/error.py,sha256=3xyutl2nPzgBZqe5fpejOp6AQXAvtxO2hy_oWRrlcKI,410
12
+ biotite/database/__init__.py,sha256=C_7zQxecZAB_x-4F_3JtU86TnB2GuxQju2mwfnLLy1M,725
13
+ biotite/database/entrez/check.py,sha256=5ITmnDoV6-lmfxux-HpXCUjcnI0dyYBwr-mqGkIb5e0,1853
14
+ biotite/database/entrez/query.py,sha256=D9f7nY6eCrVTMduDkskXmAAgRA4r11TY3gpkH2UokFA,7374
15
+ biotite/database/entrez/key.py,sha256=JS9GxvUMSYYmb2wU5uQduKUjITXRfY62aFyUH7_OMTU,1112
16
+ biotite/database/entrez/download.py,sha256=RsB1xgcVSY_fjM1v2CMGwjImWG5e5qFg4_pttdgBxq4,7376
17
+ biotite/database/entrez/__init__.py,sha256=-hAxLc_DdszhiCj6OO_jgSY-xmD05rC4urdUNHusr4s,388
18
+ biotite/database/entrez/dbnames.py,sha256=57WUYPlTtPRne74fypNgFnE0cl91_WSRwzkoQsGjR6Q,2620
19
+ biotite/database/uniprot/check.py,sha256=TJeIGnPGVOEXrvn4V4EIJs0NEXnvWDfXDAgZzSs2evY,1373
20
+ biotite/database/uniprot/query.py,sha256=XZHNAARmrJP2zDVrdL3kmRl-LK_rTPweIGseBogCcqU,7551
21
+ biotite/database/uniprot/download.py,sha256=HmWrYpNzpSvGGZP26xk0nzAv4fwzhA8mDZ4moexWgc4,4308
22
+ biotite/database/uniprot/__init__.py,sha256=Lsk5Jd-qb5167VTgN48lWSSbqpjCM-fD0XKJyxaZb7o,334
23
+ biotite/database/pubchem/error.py,sha256=_-SE2w-Jx5HqL8ll5deiaXAKAeEPC0ysSG6F3Mm8AGA,713
24
+ biotite/database/pubchem/query.py,sha256=czvfK8KttZQviw65NsdYFqt-IECW77cN6TrocU7d8oA,26448
25
+ biotite/database/pubchem/download.py,sha256=5Se2dU0jB0MPrfCfwuwDDUgO_k7BkRqegDl9c_76IGw,9867
26
+ biotite/database/pubchem/__init__.py,sha256=xjwfutIL4-JeTs7v4wCkRyy5q4KE7fGWDvo46ubkXt4,669
27
+ biotite/database/pubchem/throttle.py,sha256=HXf2l7EW5RLdW0bg72uSdXCDZXFXOE49akhfgKhEdc8,3286
28
+ biotite/database/rcsb/query.py,sha256=DAXZJbI8lUey80MuA1QNetqv3MgqaAaY3jM9MhrjrTg,32919
29
+ biotite/database/rcsb/download.py,sha256=8q0yA5LL9avzWpy1I6s-59VRHg3mhuJltIldEN5CmU0,5622
30
+ biotite/database/rcsb/__init__.py,sha256=sTJnL4vYwhO7gSszMuT_Lr91uwX0wM1h-fZWiZkITYA,332
31
+ biotite/application/util.py,sha256=8iReyUmCizsbhkUv1t5QKx5tH9M101ebKy4EnviP2v4,2111
32
+ biotite/application/localapp.py,sha256=JeiqQxP9JgV_kCaYXi14I_cfsxZZDEieymNaN_5sKqw,10270
33
+ biotite/application/webapp.py,sha256=ysKcsdAPlOZVMq3aCHVD8VdGyrrFjEDklMre6aytSTs,2161
34
+ biotite/application/__init__.py,sha256=gOy5iGp5uuKTd0qpR9LgsmanB3ZfdQaTnZcKMRDwSx8,3079
35
+ biotite/application/application.py,sha256=KbrqhjBLtkjEix0puJ9VpLQoc3vs4hQZ1kW5O1c55vw,8098
36
+ biotite/application/msaapp.py,sha256=hDoyPyDjJVt0qQSZLlR7DLSA0uJ3qTmAke-dP725_ik,11976
37
+ biotite/application/dssp/__init__.py,sha256=lUf-A2rJzPLJYZQZGpZUt7HtA0M59KaX6zQSCrkhfF4,323
38
+ biotite/application/dssp/app.py,sha256=tHoG8uFmX8WaBHm0Fhjc7D0NXEaMa-zkLvwFzyP4FQk,5323
39
+ biotite/application/viennarna/rnaalifold.py,sha256=DmsHVi18izXS0ee6FN6MfgrCEScw9v9qSvkGOjHs8IU,10608
40
+ biotite/application/viennarna/util.py,sha256=4jvZRRBSxPHzT9HJ9jooUzarUg5JTzDMoQASuBvTSqI,2634
41
+ biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
42
+ biotite/application/viennarna/rnaplot.py,sha256=Z8TdKvd3mYAdUOdPLdsY10aeHVDsoXKJxsiChWkfjy8,6416
43
+ biotite/application/viennarna/rnafold.py,sha256=Tr6VfGLkzNhcGujND_k5XUb9uYAMsysnDWQ6oTcIamE,7910
44
+ biotite/application/sra/__init__.py,sha256=8I-uPkWUiu_ePPp56mI8MkwIOnjjQODpH0YMeOh8Leg,553
45
+ biotite/application/sra/app.py,sha256=llsaWNJJaZpvTL1AOl4xWOdsv84AmQaT5LRnWqGii4Q,15864
46
+ biotite/application/autodock/__init__.py,sha256=EhnSP7PGczduv0J0FovH34g49-ruQVHrRWyfz5F0ZCY,315
47
+ biotite/application/autodock/app.py,sha256=u-ini9dbq6vkpMQfc28HdyNNxbK-DKoQmHEmSHQ1hn4,18686
48
+ biotite/application/blast/alignment.py,sha256=r9CfjvHcDCqOrR6YC-IWXq8l76qujYAz4xFfb65sfSo,3117
49
+ biotite/application/blast/webapp.py,sha256=TdM-QSIk08O9o1wbqvQhbSGQWOrFZwO9UKvPE-2nE0U,14463
50
+ biotite/application/blast/__init__.py,sha256=hZ031_9ikNQ7j87uaW5OAWbUx3R4qtqpyI1ff8lDTMM,366
51
+ biotite/application/tantan/__init__.py,sha256=jkRIs_OYhF3pSd5EXrnfbFc7S96a_F87hq2pXk3BxHo,328
52
+ biotite/application/tantan/app.py,sha256=4tTLuTEy46nGsyy5wvDrB49fXjjV3SpnEXN6y6QXxTQ,7438
53
+ biotite/application/mafft/__init__.py,sha256=VQPqkbQPAvGePLTb-Kgd1exMxDT5onbab34ukX7fiNk,315
54
+ biotite/application/mafft/app.py,sha256=gzcJZdUs5Qys0aK1uAcsMNrBB4sIjbju4Sc1hJ3JPh4,3281
55
+ biotite/application/clustalo/__init__.py,sha256=nHtEaPTQU3oXfZZhe9TyA55NzFknFyAkALLuEn-C6ys,326
56
+ biotite/application/clustalo/app.py,sha256=JdICuA14SHdiuYPt6Y1cc1d6zHTNZaXzoPk_y0Nb5H0,7417
57
+ biotite/application/muscle/app3.py,sha256=C-W7MOHjwfb4ioKtVeVSAOD9sbO58bCdG8rRhy_vxzU,7613
58
+ biotite/application/muscle/__init__.py,sha256=B1JrhQYjgwSKWxpcYgXS91f2GM5Tc1i9Ocs2wElslRs,338
59
+ biotite/application/muscle/app5.py,sha256=9h7kszwf0cr_z9xaWsMi2UKxYMK8Fwo_5sGyGTvmoN8,4435
60
+ biotite/sequence/annotation.py,sha256=b0A1_NciOz2g3PEG0AgIcNC5XXmHap2PScbIpyKO0v8,29513
61
+ biotite/sequence/codec.pyx,sha256=ed415FTMBJfiI9WbgKRFO3tF1f_SpRHxyEafLxW-g1k,4962
62
+ biotite/sequence/sequence.py,sha256=6k2WVEd4JX4pnTQ-nbtrhvLBCVEaTpsETfsiCBD5Cfk,11693
63
+ biotite/sequence/profile.py,sha256=ZiCilbHx43SYvm9bDkoHDu5_-V3T5xllRZw26pTmZ-E,19375
64
+ biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
65
+ biotite/sequence/__init__.py,sha256=fSWhobaPGRMJI6-8UYFpjguxVtP4O4cAHmiRxNAGzYI,3423
66
+ biotite/sequence/codec.cpython-313-darwin.so,sha256=J8kEBsIxuy9GwnVkCFNrm47hwA-hYe5XmRWATvg_FD0,281472
67
+ biotite/sequence/seqtypes.py,sha256=OvOOhWzoRCXpgXM2is6T06RV9etxLeFoLErokWuc60c,23093
68
+ biotite/sequence/codon.py,sha256=6SBjwz4c6IZiAFZL03qjcrjT84zczltc14haOOAkm6Q,16392
69
+ biotite/sequence/search.py,sha256=dF-OtPocZ5XAIgS4GCMt2YOKz0Oxb9b8FvPmVUY8j-k,3089
70
+ biotite/sequence/alphabet.py,sha256=IqZnJZtUku9HPcRwx8ta7dRaK7knmoNW1quMcf-2ZAs,17245
71
+ biotite/sequence/io/__init__.py,sha256=4K13uxFWe8IpNC8yuVxjDiI7-8lmXu7qT6iMmVSqPs4,314
72
+ biotite/sequence/io/general.py,sha256=sD03pLnkxsT6vFh8806ZhErC8GEG3LF_70NMcVJyGe0,6694
73
+ biotite/sequence/io/fasta/convert.py,sha256=m1uWLtCfdzI-to5WLxqiQrQKtWKBDyr14qE_54x0jLk,9421
74
+ biotite/sequence/io/fasta/__init__.py,sha256=rcpXd-Mzp-qCJC2zW3O8XSgpcefOq8ftFLvvnuYL3ec,720
75
+ biotite/sequence/io/fasta/file.py,sha256=46NZiI32mqNMAzej8y6uUyCtW-gRtoxWg1v54VteDbs,9055
76
+ biotite/sequence/io/gff/convert.py,sha256=6ye_ObtHfZbBoazyXqhRXhCVmLrqq65_lraSIeZDBQM,4614
77
+ biotite/sequence/io/gff/__init__.py,sha256=KPWsE4Hjd4QY2prhi4W4WmwW-z_kySy0ZiUOSnmyGy4,923
78
+ biotite/sequence/io/gff/file.py,sha256=OxQgja-LVAYVRc1tSB5t_1mYenvNX5SJ8VtMV37Y0l0,16096
79
+ biotite/sequence/io/genbank/annotation.py,sha256=t39bqsDmLyLBTS_wc15uGOVsqJ-GRP3iXGIqJBxzUow,9431
80
+ biotite/sequence/io/genbank/metadata.py,sha256=rhLF30_RSluJ-sulsKpUjqHNqVazvkn98fTCCoATAXs,9351
81
+ biotite/sequence/io/genbank/sequence.py,sha256=2iz6gBZEPOqyDI2BOHeeR7poad2G8in1uKcy67z6pXM,5419
82
+ biotite/sequence/io/genbank/__init__.py,sha256=9H6gHYLBtZ06YkT616wwJF89G1sFToSs0QRuQ8noZBQ,473
83
+ biotite/sequence/io/genbank/file.py,sha256=UQDvUUqftl7g5mMHPVrhzNzZEai8fmKDXlTfB-EifzY,20366
84
+ biotite/sequence/io/fastq/convert.py,sha256=x4rWn7WHdKxW1u7mwDgM8Z3qaML4lAO7r-JiMTQbvaI,3632
85
+ biotite/sequence/io/fastq/__init__.py,sha256=lhw9bxWS0eKPXzF1lg8fvrNmgAmJPLBzIB6jEP5GOVI,588
86
+ biotite/sequence/io/fastq/file.py,sha256=OwSUw-Unp8AQc7LdpJSI2zmavBWsCcqov23HPHWaXQU,17816
87
+ biotite/sequence/align/multiple.cpython-313-darwin.so,sha256=93fiSLwrFti3fGelVnhwJYaMva0Di4DXwwauNwz1M-U,534336
88
+ biotite/sequence/align/permutation.cpython-313-darwin.so,sha256=09QqIbUYy_OMr4dFdiigQexZ1g3TqapX3xGOXxT0-dI,220296
89
+ biotite/sequence/align/matrix.py,sha256=XQAdUhlA5suO9MkPhGeqXMcfxB-nD71Sybk1P_ySVP4,22103
90
+ biotite/sequence/align/permutation.pyx,sha256=xbbw5DJ7c5SXnuSUl2hJUMxzvinKP1Khc7CSdH5cEE0,10028
91
+ biotite/sequence/align/selector.pyx,sha256=13MYCmECOYFGoMQHgCRgKKeN74VOUSc0TnZuqRJhBo0,33471
92
+ biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
93
+ biotite/sequence/align/kmeralphabet.pyx,sha256=h21N8B1KwTHPYz0KzyM2pYuap4hDCQPfNSnqpuhJn7Q,18636
94
+ biotite/sequence/align/alignment.py,sha256=Ccz-Dzo76PeNoBVLNymxf4YTgo0EelSyGTfRXkGrbdg,21693
95
+ biotite/sequence/align/pairwise.cpython-313-darwin.so,sha256=Yc9YRh_3ICsXdhsTxH2DP9NMcVmZtWxx4X3zYJSMdNs,621144
96
+ biotite/sequence/align/tracetable.pyx,sha256=1gsT3OV7VkE6i_UpNiYOLVvD2_tfJgbNZb1yv9F4XR8,15455
97
+ biotite/sequence/align/pairwise.pyx,sha256=88bZUcDG3CflZPdUN_HMJaIMTKCAtBhmhq946tY__KE,22836
98
+ biotite/sequence/align/localgapped.cpython-313-darwin.so,sha256=bqQB_zwClIF2x9oGB04ZrDBe1aq0KZP1ti2eLh4QT2I,1081904
99
+ biotite/sequence/align/banded.cpython-313-darwin.so,sha256=DYeoR_cMxWRPzLibGpsIGRZ-pBxaUEXSGm2MlI-eDJo,608864
100
+ biotite/sequence/align/__init__.py,sha256=Twwj35DdxgKu9pN84u2PEtwo6MekLENbkaGbAPxB2A4,4715
101
+ biotite/sequence/align/localungapped.cpython-313-darwin.so,sha256=itVe3s_fcxT9w2nnXpi3bgSQlbndcX5B75XYbZZiGDA,300640
102
+ biotite/sequence/align/localungapped.pyx,sha256=rj6gbuyLQIo6ZuPwVt01rs3fOSOjpzq6Vx3v6_zKdEQ,9696
103
+ biotite/sequence/align/buckets.py,sha256=k8H5RBS5Y7DrMoIOd5Ifrxp-nYWosJuqOYgLd1y-DWs,2464
104
+ biotite/sequence/align/selector.cpython-313-darwin.so,sha256=zo90GG6s2rDOlOGjlzhqwxzU_V7rJj96FT0nnXCUB4I,311568
105
+ biotite/sequence/align/localgapped.pyx,sha256=djdmgvACXde0dyqbKttc4itgu0MNh7aF0U9L6tHTZXM,33385
106
+ biotite/sequence/align/cigar.py,sha256=HGHelQe2SH4SdKjcyTmVlvrlllFzDtpiysskFcclIW4,14285
107
+ biotite/sequence/align/kmeralphabet.cpython-313-darwin.so,sha256=Zq39rOJQ-bPzUyWZXMmLxNG9Pio7wHNqvl6pEr3NJDY,418296
108
+ biotite/sequence/align/tracetable.pxd,sha256=_VP1ayP6FZL1Tzn1pCCbt6xPZDzFtE9bH0Gvop2lxyQ,2825
109
+ biotite/sequence/align/kmertable.cpython-313-darwin.so,sha256=Up6QLtpaEqcn5jBiK3IV_kUbDyRw7OK0aomE7phjFDc,726952
110
+ biotite/sequence/align/kmertable.pyx,sha256=60fHpaQm21cTvvO6RepnzO43gouRyVEZ1nQu3oJHaAU,121697
111
+ biotite/sequence/align/multiple.pyx,sha256=cUnbuAfYBp_Kt4Y7LeuPeuBiRdyu1D694i1kQIsUqPM,21965
112
+ biotite/sequence/align/statistics.py,sha256=98Vaz__s_8GltcMwfErNuKQfXuFKZCq-i1XWkJ_iAMQ,9655
113
+ biotite/sequence/align/banded.pyx,sha256=IoC59rBadaLdO3LFMoU6mHu7MX4Ri-PkMcd-sFHn2Po,25393
114
+ biotite/sequence/align/kmersimilarity.cpython-313-darwin.so,sha256=lrC4WRcUdIC3MtuVJbvpTwXrG_1POKILB3wZj5v8ZKY,210624
115
+ biotite/sequence/align/kmersimilarity.pyx,sha256=EBpz8R_fofRd4gsmBJLuH2qZgMWKlzQkCJ54w_-K7gQ,8433
116
+ biotite/sequence/align/tracetable.cpython-313-darwin.so,sha256=9WBgxaPKlqUHVWeW0c5Nc5T09nGiXqMqAFoBiUtY2Bk,176512
117
+ biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
118
+ biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
119
+ biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
120
+ biotite/sequence/align/matrix_data/PAM80.mat,sha256=EQjS999W5zT3ltZxtjqNsdF54cED_KfiXMCr_0EdvHs,2666
121
+ biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat,sha256=VkfMzO1eMLvpj5x4iL_YAopkZpYEjvx0QnuveFoVnTg,1850
122
+ biotite/sequence/align/matrix_data/PAM40.mat,sha256=OAGOKH9t72qvn5P2ydSf3oPvy-XSiFH1vC_-a4hqEAs,2666
123
+ biotite/sequence/align/matrix_data/PAM400.mat,sha256=sdF4tBZUHl_WQA_YEhR46_TMkaqhsdfh6j4EzylYqKo,2068
124
+ biotite/sequence/align/matrix_data/PAM170.mat,sha256=a4eCSlODOitkpUjyysvm3A9WtVBN-S_IH3kjbG9AVtA,2668
125
+ biotite/sequence/align/matrix_data/PAM160.mat,sha256=87otpzOMs1nIbU_B5MvTpShSJ3iixYyHpAJttuwFeoY,2067
126
+ biotite/sequence/align/matrix_data/PAM410.mat,sha256=gtd1bfoNX8M8Ey4B266w7AyTVi0kD91NcF3KJVB6wcM,2669
127
+ biotite/sequence/align/matrix_data/PAM50.mat,sha256=L3wZ938pS5_dWww1UAITFNql0NaDyIDk4NrCK9Yz9Ww,2666
128
+ biotite/sequence/align/matrix_data/GONNET.mat,sha256=xNJHqcmqSFtO1fFCL7Q1rhr-MVsjPLi6yMmXJLQSUTU,1679
129
+ biotite/sequence/align/matrix_data/PAM90.mat,sha256=e-zxoVFQHxDoHT2_83SgzRnY88tT7_q8lg6Ikk3ioXs,2666
130
+ biotite/sequence/align/matrix_data/3Di.mat,sha256=vOp0H-cCTJC3puTPYU63e2ymGVvVNEdhnqzV4jQPJWo,2021
131
+ biotite/sequence/align/matrix_data/BLOSUM35.mat,sha256=wt6Gkbx6KPazNoRXfedE-yXjH6Par0PXiVpFprenJGU,2122
132
+ biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat,sha256=WvizmTK3QOPODABlz6_X8YT4KgvMZKy_0PkbOthDpjA,1850
133
+ biotite/sequence/align/matrix_data/PAM200.mat,sha256=BUDVdPGRgVgxH552pwFA2WkO5QpM1gLLu6cgMiNhprs,2067
134
+ biotite/sequence/align/matrix_data/PAM360.mat,sha256=-TWC24-2AF5Tfsg64Sopiap34154wHIFmrSRQlDDTXo,2068
135
+ biotite/sequence/align/matrix_data/BLOSUM85.mat,sha256=olO7oxXaVtmNJNLCtacRvie-235EtZ63aDDV7fXY6c4,2122
136
+ biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat,sha256=HafyyKYsVh9EJG869LAbqpVF5fMnZB-3uJV38EjlPR4,1850
137
+ biotite/sequence/align/matrix_data/BLOSUM90.mat,sha256=TebOIl7Y7oTgQcT2PC2vL0Oqhs3RsSCGgHTchJXHIU8,2122
138
+ biotite/sequence/align/matrix_data/PAM500.mat,sha256=C4uoSrH1V_DYYPH5VBF6mUf6l9hSfhQ4Xhrj11suGes,2070
139
+ biotite/sequence/align/matrix_data/PAM20.mat,sha256=Pdom13Fn6QDH_zCoJRA1fYlFnkSl0mVmoyZ7tRyQsk8,2666
140
+ biotite/sequence/align/matrix_data/PAM460.mat,sha256=BbV3cIcdHq-OxTXgjOEGJdboPOW77s49yLESURjLT1w,2069
141
+ biotite/sequence/align/matrix_data/PAM110.mat,sha256=A6diM61xaLeHh-ilFD0NSh7dqR5GSfxvyboLYWr9ctM,2066
142
+ biotite/sequence/align/matrix_data/PAM310.mat,sha256=WAMSfgRZyS_Q6pI5j34tN7V6kVHSA1zxVhSwJnZlZTM,2068
143
+ biotite/sequence/align/matrix_data/PAM270.mat,sha256=GHm5rgJf1aPdSxiUfIg8c4rO0_MssNR5EU4GCXUbdsk,2669
144
+ biotite/sequence/align/matrix_data/BLOSUM45.mat,sha256=GaB31QYKlKYhKtYJ3zA6JARjhzppaU6fV2xXYvv_2wk,2122
145
+ biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat,sha256=-CAqsMmAh5593WHhcUr9i_idl4-dtrCX-oHY_4oTTCI,1850
146
+ biotite/sequence/align/matrix_data/BLOSUM50_13p.mat,sha256=vh0DKMYb6Zqg31fqVhlObTWhk8LJgevlI8VlQmnXOO0,1850
147
+ biotite/sequence/align/matrix_data/BLOSUM50.mat,sha256=oVLjC4r8q0IoH_hgS8UTWL6YJTFV_eYq4gcHgFoNPWc,2122
148
+ biotite/sequence/align/matrix_data/BLOSUM40.mat,sha256=GiFTkaezFzIoLRmaejU0lEmOrQhCxNzf7KrPY4kRdlg,2122
149
+ biotite/sequence/align/matrix_data/PAM260.mat,sha256=9jEd8LFi-qjASOb72oNHpo_l-pDXq3JjLnRfOCm3jFQ,2068
150
+ biotite/sequence/align/matrix_data/BLOSUM55.mat,sha256=lIELun4-b77M0Sv5VekXhCZcFW97ruo1NIKv_rdrPiY,2122
151
+ biotite/sequence/align/matrix_data/PAM300.mat,sha256=fzIOK3tBJvxAPm3eBUENzQSDblSyqghJwwc6wYUGQfc,2068
152
+ biotite/sequence/align/matrix_data/NUC.mat,sha256=xgPkb5oVn7RRYyzfn5xoe659qtsw-yZF9f0Jys5wdJA,1171
153
+ biotite/sequence/align/matrix_data/PAM100.mat,sha256=AFv8yYX7JO8xsvpktGbFIHxmfp0HCmb-cDqUmEmbkF4,2066
154
+ biotite/sequence/align/matrix_data/PAM470.mat,sha256=iWeG55pioMzuzbuPsmUECPlzowP63Ttgdnq9cKP0gEQ,2671
155
+ biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat,sha256=aGEwU0vk_MOeDN_7u9eOO4DnYjWoEKk6DgxZCgb9HxU,1850
156
+ biotite/sequence/align/matrix_data/PAM30.mat,sha256=j8VojReY4jJuqzcZue6SmZUqIMlDTkxVKL9FMuRYbmM,2666
157
+ biotite/sequence/align/matrix_data/BLOSUM80.mat,sha256=LllxdrgJKAi6GZz8nYDcjWV7Wj5QFd-4HVVyhYGc4Yc,2124
158
+ biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat,sha256=MmqiM1WZTAN9DX5wxt-8pI1uoEXDgbCStUhwAyXoSlI,1850
159
+ biotite/sequence/align/matrix_data/PAM130.mat,sha256=Bs6sHk5rIbjwfffBuYSDk85LtDSsSSnJM2JT3ezw_P4,2067
160
+ biotite/sequence/align/matrix_data/PAM440.mat,sha256=bF2DkFSgljfdj3hJMbGngQ62uGks7s0_TaCPWBcf6LI,2068
161
+ biotite/sequence/align/matrix_data/PAM290.mat,sha256=pCavYvRBDo9CQLsKDhuwmxyfkV8XROjQISulxSjMfFA,2068
162
+ biotite/sequence/align/matrix_data/BLOSUMN.mat,sha256=YszKvjUBwH8YWd8z5xILKFvUMu1cvL1wHkTiOH1dMcY,2121
163
+ biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat,sha256=_ceD-DlNi1VJsUBdxQFffeMbBaYS0fLO2dDPHHi1d_Q,1850
164
+ biotite/sequence/align/matrix_data/BLOSUM62_13p.mat,sha256=4z-R_JXr0dl3gDY6OAXLB_GO71NVP4ibKhduRuFeTjc,1850
165
+ biotite/sequence/align/matrix_data/PAM480.mat,sha256=7eUrMblKu7oIAVUvINWGr8Xs2-eCA81TMUhP5m0QvwU,2671
166
+ biotite/sequence/align/matrix_data/BLOSUM70.mat,sha256=kl3LsfT3r8zCWRHW3sJjiBUP6S6xCSySRmHPOIhu9Hc,2122
167
+ biotite/sequence/align/matrix_data/BLOSUM100.mat,sha256=Lj6_ayLvWa6148OKEtyHuOsd6hszb0suzDIpuY4XPJI,2174
168
+ biotite/sequence/align/matrix_data/PAM250.mat,sha256=k2zF7yPgJixf2vdNXYH1iEjrdMyg1b7w85bSexaJcE4,2068
169
+ biotite/sequence/align/matrix_data/BLOSUM65.mat,sha256=ZbjpdSsPq4yt3j-p1CbG4EkchKwNtTwk4nDanjKWdYs,2122
170
+ biotite/sequence/align/matrix_data/PAM330.mat,sha256=cUa0Kd14AWTjMcH9mU6VUIoKYSpKwV3N7PgPGuYJvtA,2068
171
+ biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat,sha256=Ri8ORSV5rHnxJgtNiSJ7PIVTaaYThtMoUHJ4ym8ZSsI,1850
172
+ biotite/sequence/align/matrix_data/PAM320.mat,sha256=c1aHpd5_c05sUdVCXYPh0x7i2HLBbeesTXLE2O3q8Xw,2068
173
+ biotite/sequence/align/matrix_data/PAM240.mat,sha256=A0Gc2o7EZyP4KmHjDFavCR05FLPlDRfft_dpNPU_T4I,2068
174
+ biotite/sequence/align/matrix_data/BLOSUM75.mat,sha256=_nk7JXwGAiqRA4hbEKxihkdPGAxkVVd6UWDT-3J7oX8,2122
175
+ biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat,sha256=KtQkagPYJQcovVafvPvEfahCw-Ohmm_Ck3chzWmI4Wc,1850
176
+ biotite/sequence/align/matrix_data/BLOSUM60.mat,sha256=iHPf06rge36Xi7k1uwFKwvTb_hHrGNL44TApk3C5Ss8,2122
177
+ biotite/sequence/align/matrix_data/PAM490.mat,sha256=34zBaxPzrPcsBEEIU5aiY2Zih5VIm2pXuaNVmMBzGd4,2070
178
+ biotite/sequence/align/matrix_data/BLOSUM62.mat,sha256=hVENOEbubV9HeOQlz42vbg27iJswby0TQ04SVHgO-0A,2122
179
+ biotite/sequence/align/matrix_data/PAM280.mat,sha256=rY1PexjhfsVxp_4qa7BMiv7_9xF95K2ePVE7i-iAFPM,2068
180
+ biotite/sequence/align/matrix_data/PAM10.mat,sha256=iQdTLbAqn58hp5TQ6NJus3C2Af5Ga11i7eJGK9LQjdo,2666
181
+ biotite/sequence/align/matrix_data/PAM450.mat,sha256=fboz1GEu55EwZPMG0gl6fFFiWojvz8rbZxcl6ziWNCQ,2068
182
+ biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat,sha256=3q0VPjzTta9EUt7JFlIvJApplOilUrcbg275Xx4tmJY,1850
183
+ biotite/sequence/align/matrix_data/PAM120.mat,sha256=6tNjpzRcyzDXtNz144uTYI1LtlQHMoffi6rc2uLU8pU,2067
184
+ biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat,sha256=GUiQ63AMTP91d5poXhaUN1Pgv-8nb3B_kvQzOKmwEMk,1850
185
+ biotite/sequence/align/matrix_data/PAM190.mat,sha256=h-CbsySNQqW2YCS67ptA5CktzqP6hRqvud6dXXYnvVg,2067
186
+ biotite/sequence/align/matrix_data/DAYHOFF.mat,sha256=qYkUgQ37EYTawAjc52vbPNJOfC9LYo_vmuX-Arsa2mg,2081
187
+ biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat,sha256=mPlyPQkz3RID3iT4XxYMDmyLfEya7sCV6t5BGdg665I,1850
188
+ biotite/sequence/align/matrix_data/PB.license,sha256=OkDCfXO06BfooLXYC3iF7LXXB_Uqqex1B2gjUEFdUZI,1091
189
+ biotite/sequence/align/matrix_data/PB.mat,sha256=1T1JxAckzd9oXRSXe09M6mYp-gjOhxeh0d8UMrt4dv4,1694
190
+ biotite/sequence/align/matrix_data/PAM230.mat,sha256=kpdHawONOvHXHJgUnkPMFRikSyqjtU1Rucp_foRV6Jc,2068
191
+ biotite/sequence/align/matrix_data/PAM350.mat,sha256=gGMAQ5oeI29qv2GkXcg4NBvueP0ylj1CBPj4J1W7Wkg,2669
192
+ biotite/sequence/align/matrix_data/PAM150.mat,sha256=1Jbj7ITgahFFbjGbD3dS0WXrYL2HmSYj9_6ITsgNSWQ,2067
193
+ biotite/sequence/align/matrix_data/PAM420.mat,sha256=v02OOl9-ZTthEs0UQXdu_olwV7vzcVhlweDKUnUdQfU,2669
194
+ biotite/sequence/align/matrix_data/PAM60.mat,sha256=IKL_uHSfVKnGPTxq3TTh78Z6Q4Pw_Um39V8Uz6ACTkE,2666
195
+ biotite/sequence/align/matrix_data/IDENTITY.mat,sha256=ZayOMxt7zidr8C0JRiG3knc5XT2F718W3PT4G15AZv4,4057
196
+ biotite/sequence/align/matrix_data/PAM390.mat,sha256=EUdmTuLyEY9VF-OcexBlglFhHEks4yzolczpRsXN4ek,2068
197
+ biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat,sha256=LBEV4ormPIv1WntfL4RZt4Pi0He9xYY1zq3iWLXi_fU,1850
198
+ biotite/sequence/align/matrix_data/MATCH.mat,sha256=ZSRUBke-2jfozrFVZK5xmGjcKv4GGAcSq9h7PgNmSME,1850
199
+ biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat,sha256=X6FYu0KwcgQBEo93S7ZbmcZeL86he_ak0XVa-r8lJ58,1850
200
+ biotite/sequence/align/matrix_data/PAM380.mat,sha256=5Bt7fOVfU2vRNR5IHvxFwgRwYgOOqYpdElMMrK-e0HQ,2068
201
+ biotite/sequence/align/matrix_data/PAM70.mat,sha256=0YDiLYDyWtpBLW62MHD-cifJVHxmc3Jykf2bLUUpRuU,2666
202
+ biotite/sequence/align/matrix_data/PAM430.mat,sha256=PxW4F20F3-ArQgqb8jdemeGw4Q7FKd1P055_sOrKZKg,2068
203
+ biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat,sha256=radLsoMzRcgXzX0ZwDShU44I3qRLskMU91lf6V5MTws,1850
204
+ biotite/sequence/align/matrix_data/PAM140.mat,sha256=0ZOMbK_5afy-zU8BOL9UkxEkX3DjfD6t-LJGT0H8f-o,2067
205
+ biotite/sequence/align/matrix_data/PAM340.mat,sha256=9rV5CU441SuU-MhTIOFBHbg2i6b2NZJ2GfemgAeQUQA,2068
206
+ biotite/sequence/align/matrix_data/PAM220.mat,sha256=58FW5l4TkLX5rUALdt0rrOXQWGqGlatGJjaZcN3HHYM,2067
207
+ biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat,sha256=m3Es9ILTi5vCKAKjV40dLrJpZ8I0n7QaueKi0tNa1NI,1850
208
+ biotite/sequence/align/matrix_data/PAM180.mat,sha256=mll_lIfL8oBzNlNcEhoh6ULv9lKG-HTBanUyJhzDO-U,2668
209
+ biotite/sequence/graphics/alignment.py,sha256=WpTyskbya6x9ergwAKbTxQ-YxbxgfM2AwvPfw2E0FKs,39530
210
+ biotite/sequence/graphics/__init__.py,sha256=9o7zvUaCzuEhYzr1_dj1SID2EaQky2fSxVF7NkGoHC0,1152
211
+ biotite/sequence/graphics/features.py,sha256=HzS434k_kKrd7hzCQlPeQH3_YQg3Y3fRx2k9n3LZ9FE,17295
212
+ biotite/sequence/graphics/plasmid.py,sha256=_cP1pHLzWgS66UIhMSAuWD5JWP0SmBzWjPBJxHgR3Fc,26002
213
+ biotite/sequence/graphics/dendrogram.py,sha256=11BkMkXQFCZY-OC2mTnhfiS53RLtH_Gz38tMYDAx-To,7592
214
+ biotite/sequence/graphics/logo.py,sha256=6xhkspwu2Mbjo9aabw0gXgbcNqOdB9tw4IzPYMgzo0Y,3819
215
+ biotite/sequence/graphics/colorschemes.py,sha256=GvmyxoEyYFOFwK2zM_DXM8RPecEDGhalOVinR7BdQ_Q,5517
216
+ biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json,sha256=FTwFLJ049NH4CFS0B5OaXtmySkE6yiluenixoNSaZSM,785
217
+ biotite/sequence/graphics/color_schemes/rainbow_protein.json,sha256=C5imi4gVjtS0HVV6yQK3MOgNuOi1SPCnGDHiYqqbaU4,753
218
+ biotite/sequence/graphics/color_schemes/wither.json,sha256=6dq-9koLqk6ec5WCLYzFRcnjmIYjjnLfnecZwMur3yw,842
219
+ biotite/sequence/graphics/color_schemes/flower.json,sha256=S0xkRcSkM_awZxpIBQqhT4_vxnWjVKq5ZXF6VxWBY7o,842
220
+ biotite/sequence/graphics/color_schemes/jalview_buried.json,sha256=SyfbSC5TSbdNudMZa6IrT0053OLJapLObuF2ERMdJmc,777
221
+ biotite/sequence/graphics/color_schemes/ocean.json,sha256=oWGprmKUfhXuTuAkZezrDifhIdf3ko6LIF2yK9OqcbA,841
222
+ biotite/sequence/graphics/color_schemes/jalview_prop_turn.json,sha256=q3znbzT1Hs_JRr7Juud245Be7JIiiNlZm-7XoaRssIM,779
223
+ biotite/sequence/graphics/color_schemes/spring.json,sha256=7by_eGRbvdxueWB2RmSxi0mYTDpAhVglnX2jkrdw8FU,842
224
+ biotite/sequence/graphics/color_schemes/clustalx_protein.json,sha256=P-PeZPcdP58RYgESclfNIVF1S84LxGqGzhBNEYaRyVY,704
225
+ biotite/sequence/graphics/color_schemes/jalview_taylor.json,sha256=q9GXPg8OaeE6SvWPvdKxBU1hHmHSNNVaiPTmmJu4pP0,702
226
+ biotite/sequence/graphics/color_schemes/jalview_prop_helix.json,sha256=mZrFbuArC56OOtdxZ0m3hQs35RTR0sCATgbaq5DfsYM,780
227
+ biotite/sequence/graphics/color_schemes/rainbow_dna.json,sha256=xG5qNN6Zov99pgEkna2jws7Vdp5cfYhKaUaPkyq9Nzw,248
228
+ biotite/sequence/graphics/color_schemes/sunset.json,sha256=HnKftW6Mv52-fhqgIElQV0yW8cYMqtksPShG12zW7Is,842
229
+ biotite/sequence/graphics/color_schemes/pb_flower.json,sha256=nZRuvOdLmtSXZKNk2jZOuXV6utQAxa4oK7E36NqlYr8,676
230
+ biotite/sequence/graphics/color_schemes/blossom.json,sha256=NneinRHISSkgrdCDtaxNCCaF6-9Ya_9PlKKKR6LweXc,843
231
+ biotite/sequence/graphics/color_schemes/jalview_prop_strand.json,sha256=83GsLW_LOC4156kX4hVXUa4LUmoJm9FhOgyXrmXOR-E,781
232
+ biotite/sequence/graphics/color_schemes/autumn.json,sha256=usp-Y70tk39LCJV64vi7t3wd0pcf7kOjEE8dZhAbryM,842
233
+ biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9CILWaiY3QkB35wYEq2kbWEDqYjm-4,701
234
+ biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
235
+ biotite/sequence/graphics/color_schemes/3di_flower.json,sha256=wuo5hCVuc_wR9a5AviU9BXRQC8XUb90VqJCsKcpq8pc,917
236
+ biotite/sequence/phylo/nj.pyx,sha256=s6hoo_7s3VFy-7Hgq9lKtUVXTZ-To8Dxwytk-ohfWYI,7281
237
+ biotite/sequence/phylo/tree.cpython-313-darwin.so,sha256=QaMW71UJXImDeEZzecptRvRKW9Hq9dego4_5rnK4g3A,267056
238
+ biotite/sequence/phylo/upgma.cpython-313-darwin.so,sha256=hx7dAPlatSULhNwc_pED9v797miwoVLb9tfVBPKjPLM,194664
239
+ biotite/sequence/phylo/__init__.py,sha256=TW1CQqOa3JZYqidRy5XE8gA0HuzA8zo2Iouit3wSsBM,1261
240
+ biotite/sequence/phylo/upgma.pyx,sha256=86QxGjj8fcGRhze7vZfqw8JLjLAZUevhkWDmzTy357E,5213
241
+ biotite/sequence/phylo/tree.pyx,sha256=4e4Bhlm1qWY0Wvj6JqDE9jVwP6lEUmE8lIHEUmRNLwU,39206
242
+ biotite/sequence/phylo/nj.cpython-313-darwin.so,sha256=0m7jsAe6wVDENpk0rgUilkvvqzZpaMvsaZFQGVCQsbE,204416
243
+ biotite/structure/repair.py,sha256=-1orK6q9tRNy36GWuS8_r4_goaGiaVtJy0I1VPCao2Q,6996
244
+ biotite/structure/superimpose.py,sha256=MvPsab-ZRdeig_SoJH3XrrOY0VteTNCnLEKNSsar0_Y,25124
245
+ biotite/structure/chains.py,sha256=I_A8JslWdBxi8cagoSGCfHddvHJ2WBSSe_WfovCwHxM,8827
246
+ biotite/structure/bonds.cpython-313-darwin.so,sha256=2IKib1IQn1Buvdk5iUvaD1dEa_8oIuI8StU5K1Vhbvw,596360
247
+ biotite/structure/box.py,sha256=6iGaGbxnsoIRt_mq727yLqU1txz7PRpA2H458Xk00Uk,18598
248
+ biotite/structure/error.py,sha256=NI8oZfhO7oYWlcEIi025QZFD3Wjvwn6SvOn_RanrFT0,783
249
+ biotite/structure/util.py,sha256=ywK8N5Po74uwTim2KuXOFIh5ivV0_pCc1W1oiZT_9sA,4956
250
+ biotite/structure/segments.py,sha256=yXfzEd5X5OisJoC7m3_a0Qw4WmQErzrLlazByeATIus,5506
251
+ biotite/structure/sequence.py,sha256=HLUaO32S_iDw2Ot1XEqQ7UtGDrxjCg30cCpzBqKpVPY,4246
252
+ biotite/structure/sasa.pyx,sha256=fEUWuLtqjEmviPuL57lLuLdopndW-b7xtzvCr0vfQtk,12984
253
+ biotite/structure/charges.cpython-313-darwin.so,sha256=dJV-8D5D8zr0FoWaazWXfnz3HTEqnImdNk9wPE9y484,257912
254
+ biotite/structure/__init__.py,sha256=VSJMdPML_2MJPcSnmfRCyAcIpFlJRN8MLrHpj7RqQQ4,5449
255
+ biotite/structure/mechanics.py,sha256=1qzDJZ1U1T_KsxwKioYjtMTy9cGYRirtxKD5AcsaJ3E,2588
256
+ biotite/structure/sse.py,sha256=MUdyNSaDvxGi_gaY9bQjUSVNm-W8B1oinJ-UFV7slwk,11406
257
+ biotite/structure/charges.pyx,sha256=RpCz4sVOiwmZeVTcMAapiWJFVBPAK0gAAiNoNZuxZWA,18822
258
+ biotite/structure/sasa.cpython-313-darwin.so,sha256=_qJ25fQNNxKtWBdCb6noiWqpcldJv4LRjx7LODwypM4,257216
259
+ biotite/structure/density.py,sha256=BosyeB-0RGrANMpnq78A8cx_fYAOFnkcAJYxP8LKtZ0,4196
260
+ biotite/structure/rdf.py,sha256=Yf9PoWqSpNK3QsWqnCnOUBGL8WwKGOakgZ0pxj5UOiA,8104
261
+ biotite/structure/transform.py,sha256=uz0t7-uv3QxJEd7oe8tpcnQPt5YfoFT6CLoruxEmvpA,19649
262
+ biotite/structure/geometry.py,sha256=U7xtFwM6OTB0sjgyN3jhxPTXQn6_NmwW6ueNsdc6Zn4,23423
263
+ biotite/structure/molecules.py,sha256=dQ1Ad7_rX8HRpEHfIhfLWq1-ydalpjwPEPHrEtDPBy4,15504
264
+ biotite/structure/filter.py,sha256=X2Mj5_Z0_lk1LxuJudlztxuu7VkVF_ObtV_FCrXyHhg,17967
265
+ biotite/structure/bonds.pyx,sha256=ILmU-8m_3yj_ZBMhMvS4Z5hl7hbugyDnzP20lnH6-sk,69546
266
+ biotite/structure/atoms.py,sha256=ZcCvMUjBVGjdJuwqMrXXTjgZYQozWPRUPXvqnJyofao,50458
267
+ biotite/structure/pseudoknots.py,sha256=hHxS4IOekR8ZqYFJvuXMexM1e1kaWmdqX18zfxAL4W0,22224
268
+ biotite/structure/basepairs.py,sha256=2qxTgl6Q1zMjvZLa331hfQzbeMwrFzvSJYAfSETnwWo,49759
269
+ biotite/structure/integrity.py,sha256=I2gcIgCoxWsC_adSsHYvbmvCz1aSeeXvIjt8uZWxYOM,6826
270
+ biotite/structure/compare.py,sha256=vJLd5RKgMYrHCZiNExMfS1ceF4z8bRj9gazFkrUhIKk,9437
271
+ biotite/structure/hbond.py,sha256=4y2FXeAXl7g2EDnwb1uDXFieGpZPQhnnkdATBechvW8,15218
272
+ biotite/structure/celllist.cpython-313-darwin.so,sha256=J-qJByU-ll5ZYh1lpTweCAH-zKiOxuBFa26wJKWJrZY,304016
273
+ biotite/structure/dotbracket.py,sha256=8S1DHu1-PRgeMHERztfOKggneVEcoUdwd0QNtcH3qI4,6834
274
+ biotite/structure/residues.py,sha256=nYkbDjGYK6pFNJ0mZ1Hyb2ocmIOWLLnLyGi1tuhXxXk,22454
275
+ biotite/structure/celllist.pyx,sha256=PCK5hx4QyuRrernfP_ty-w2ZRG5Qyn5dmibRwdVKXsE,34461
276
+ biotite/structure/io/trajfile.py,sha256=vQehU2tsUnvK_y5VyAyBpQX9ec-MQrFjFr7X0tYM8tI,25184
277
+ biotite/structure/io/__init__.py,sha256=Lxmd8x6lpWz8nA0QhXmrgjvD_mOP0KyGmEzsVGzxXX4,998
278
+ biotite/structure/io/general.py,sha256=GknBtXTMUsxhEiBrnB1dxW5ndFDHXnXT39xAlNAEr_4,8448
279
+ biotite/structure/io/dcd/__init__.py,sha256=tYiiTSmqDrsSgg_sZaoQgx2D8N9OeqlooxH46-4-iaQ,388
280
+ biotite/structure/io/dcd/file.py,sha256=jaU81fvGl4WG0zXB1dBKTOtSvFF3fS0kxeNR-wwpXlY,2224
281
+ biotite/structure/io/trr/__init__.py,sha256=5WNHMGiHNNzYdoiybE6Cs0bYAcznS5D3ABu7gHDJ__A,359
282
+ biotite/structure/io/trr/file.py,sha256=2LjaLoKYfNgyQGSEfQ1TdZQqaPyrBh3irbJdmEKFTMI,1235
283
+ biotite/structure/io/pdbx/bcif.py,sha256=TU8qz07kSxPK1GRzZK_t-wdkS5KlnvN7kmIwZdgag9E,20638
284
+ biotite/structure/io/pdbx/convert.py,sha256=HdgQpVRqE_q99IsjnAIbvL8PUE5dRt1PYscFmvBp6F8,65635
285
+ biotite/structure/io/pdbx/encoding.cpython-313-darwin.so,sha256=p_FgUfxQTbsOucSbdFJWMFsV7fAAmsI9JoBsyLMCwoI,1133048
286
+ biotite/structure/io/pdbx/encoding.pyx,sha256=ySywnGIvlDER4tcQzFMEgWkQJN_sMzB__MHbRQ0-wxc,31184
287
+ biotite/structure/io/pdbx/__init__.py,sha256=DlVXhrcuAF9A6Gim_JMccz-j8jDZuF2liDDA5cZxzx8,717
288
+ biotite/structure/io/pdbx/compress.py,sha256=-v-lpJDxeEyYtXK3tGwQFwqm73355ZocT4U6L1bZcmk,11800
289
+ biotite/structure/io/pdbx/cif.py,sha256=va3C2ANDFSuyY72gWWboY9TPUA1DlTB3zjQVeV80b2A,34506
290
+ biotite/structure/io/pdbx/component.py,sha256=L07unwDqSrNtlCAYSjTbm3Ve8rLt_rT3K2f2-zUNP_o,8240
291
+ biotite/structure/io/xtc/__init__.py,sha256=ipZjsWBil-h2ujdlEobyI2jGy5xsfRVOPAyCsYAJ7G4,357
292
+ biotite/structure/io/xtc/file.py,sha256=PknO2-xzLgKTBW5Gig5Hv1HUZ4BIHRf2con2MLxEwNU,1235
293
+ biotite/structure/io/pdbqt/convert.py,sha256=xF4m-tZG_4ykhZsknqUivFXbb6VqLXVLwmhi1AbOmuw,4008
294
+ biotite/structure/io/pdbqt/__init__.py,sha256=a0_uIzhzCHdLBMdXhb5KEhbyRSURmqYXNwdjnJ6LAbY,441
295
+ biotite/structure/io/pdbqt/file.py,sha256=XpEnIs1gW2E_r4Udnvadevo6x0ii-JmgBHnhoTFKj5g,26633
296
+ biotite/structure/io/netcdf/__init__.py,sha256=SX8u2Eu99PXiP0kvHJ4mMCXTy68wV-ptcFdYn9DzEVk,350
297
+ biotite/structure/io/netcdf/file.py,sha256=m5POlwjX0y28FjrK3lCglX9JD9r6iVuHJlQgJNZNStI,2192
298
+ biotite/structure/io/gro/__init__.py,sha256=tEKrIlgahoBJXvrwtmZ1yVSOE8QW8GS6lk7MHwE2Cso,408
299
+ biotite/structure/io/gro/file.py,sha256=vXNpc2aQVEggW8KwmkbouawWxaeOEKamDtYqS4kMhSo,12732
300
+ biotite/structure/io/mol/header.py,sha256=AbYKcqGsnPiTf1nH-bbIg97A4RClPeJwFk4IleW5Duk,3425
301
+ biotite/structure/io/mol/convert.py,sha256=sj7V7pdBlGQAAaXl7fAVf8JZC4Fd-z0gjne_0fYjyH4,3789
302
+ biotite/structure/io/mol/__init__.py,sha256=WvcNPDdf9W1zPyJ0tjTvGNxA83ht18uRQA8BF4s7Wno,582
303
+ biotite/structure/io/mol/ctab.py,sha256=r6Ryx3ZBhlxm88PWVOWGwxrgPow95DLEAcIf8N2mkGU,13470
304
+ biotite/structure/io/mol/mol.py,sha256=Eterau_ZfXbIkFHpDTvWzM2Yxxmem2hZn1tOQkXNuqM,5461
305
+ biotite/structure/io/mol/sdf.py,sha256=bAfypU7QBrP4DhHDf9Qi5eKGHU_bjC4Ox0xHSlYuPxQ,32314
306
+ biotite/structure/io/pdb/convert.py,sha256=xuodAbfXe3BOuETPhV0x3D1ogJwaba9KFXr4mWuzNqo,10720
307
+ biotite/structure/io/pdb/hybrid36.cpython-313-darwin.so,sha256=pIJo05oWt7dFCFVjA1xWjGpYcDj2tGgASu2q8UZoOmg,186992
308
+ biotite/structure/io/pdb/__init__.py,sha256=5NbUMDRKIe7jJ2ByRHpMhJzY_vIasjSgO63Zxrpq8BM,733
309
+ biotite/structure/io/pdb/file.py,sha256=Qk5oX4mPh7WDF6XS0Fy8BVrhHRtQ-Ro8llpT_W41QZY,50538
310
+ biotite/structure/io/pdb/hybrid36.pyx,sha256=BKV7oh0xrrjqVrkhTn7KEolon57fUhlG4Yf0Tf22wuU,8036
311
+ biotite/structure/alphabet/pb.py,sha256=gtGuWDpMhJUkVUO30GHhlgNhwwzycGkkGNykw32FUjU,5995
312
+ biotite/structure/alphabet/unkerasify.py,sha256=Ri7rAxBDG7_xlddpReBJkNZrl5ues3_bygpC2gDb3XY,3201
313
+ biotite/structure/alphabet/encoder_weights_3di.kerasify,sha256=m4JF4oVWBbiu6r8DM9ONQ5Bmcbqwr5dxKfqYThOmHpk,1032
314
+ biotite/structure/alphabet/__init__.py,sha256=tUAybrggScCsom1b_EXQ63pA88L_PmQpcYS-MnqKavM,928
315
+ biotite/structure/alphabet/encoder.py,sha256=2BWLMdGBr2bHw09vMhbzPztMKSnVt8UhUf85g5M1xnY,11383
316
+ biotite/structure/alphabet/i3d.py,sha256=eIcm3l0GLkjxm17bykrfwtKpS5AYDAsDiChLOyMVCu0,3010
317
+ biotite/structure/alphabet/pb.license,sha256=OkDCfXO06BfooLXYC3iF7LXXB_Uqqex1B2gjUEFdUZI,1091
318
+ biotite/structure/alphabet/layers.py,sha256=Y1Y8G2LqqzC7M0kNUv8k-EXTVVKGLnPDJKdRrVEf3H4,2087
319
+ biotite/structure/info/components.bcif,sha256=wwalqJIJBcRDT7wXyzWbn89uSsum-4Ah87ImtfpDMVE,57915331
320
+ biotite/structure/info/misc.py,sha256=rfNLLm21FPq-Ugpf3J8tX77fxkQsotZbOY-_vbWmGP0,3429
321
+ biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
322
+ biotite/structure/info/__init__.py,sha256=k08kdsKlrxaVQ9x8MjEXoVFaXl1J8OcpLf6iG7dUgOY,698
323
+ biotite/structure/info/groups.py,sha256=dX9kK5KGyLvH38-5L7y_oaaI1poR2FIARrzfBXGSwPQ,3187
324
+ biotite/structure/info/radii.py,sha256=sNbJZz1AU9DBkImwRwwtWZEH_A3CFow5Hsx1D-U3_Bw,5610
325
+ biotite/structure/info/standardize.py,sha256=hWsxKSo7xdiGRyOoQcay0mslPTtb9cQuQds5IsWG8Xg,7759
326
+ biotite/structure/info/bonds.py,sha256=6pXAZPeKPL2pwFi5fhSyTwh_gd5fToIgvwguGffrE-0,4644
327
+ biotite/structure/info/masses.py,sha256=HOdaeFZkd5LSrl00025S1MwXT7im8V-s0bU54tr1te8,4555
328
+ biotite/structure/info/atoms.py,sha256=RniEQ9e_ocMV3sPdpTokm4s-V8A49n0W0ZsYoEv4YVI,2622
329
+ biotite/structure/info/ccd.py,sha256=EBSqvzgIXl7U5wxSVOFPSaLQLBRP2E_mUVXEwsRyOO4,5853
330
+ biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
331
+ biotite/structure/graphics/rna.py,sha256=w7zFMKo2ZZ4n60SkbkupEXPxe3-KUNa261PF784ry8k,12016
332
+ biotite/structure/graphics/atoms.py,sha256=988_URX4hfTE3oBOYgAvZruOrzogMPcFKiTT5RJL01E,8116
@@ -0,0 +1,4 @@
1
+ Wheel-Version: 1.0
2
+ Generator: hatchling 1.25.0
3
+ Root-Is-Purelib: false
4
+ Tag: cp313-cp313-macosx_10_13_x86_64
@@ -0,0 +1,30 @@
1
+ BSD 3-Clause License
2
+ --------------------
3
+
4
+ Copyright 2017, The Biotite contributors
5
+ All rights reserved.
6
+
7
+ Redistribution and use in source and binary forms, with or without modification,
8
+ are permitted provided that the following conditions are met:
9
+
10
+ 1. Redistributions of source code must retain the above copyright notice, this
11
+ list of conditions and the following disclaimer.
12
+
13
+ 2. Redistributions in binary form must reproduce the above copyright notice,
14
+ this list of conditions and the following disclaimer in the documentation and/or
15
+ other materials provided with the distribution.
16
+
17
+ 3. Neither the name of the copyright holder nor the names of its contributors
18
+ may be used to endorse or promote products derived from this software without
19
+ specific prior written permission.
20
+
21
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
22
+ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
23
+ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
24
+ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
25
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
26
+ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
27
+ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
28
+ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
29
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
30
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.