biotite 1.0.1__cp312-cp312-macosx_11_0_arm64.whl → 1.1.0__cp312-cp312-macosx_11_0_arm64.whl

{biotite-1.0.1.dist-info → biotite-1.1.0.dist-info}/RECORD

@@ -1,8 +1,13 @@
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+biotite-1.1.0.dist-info/RECORD,,
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 biotite/copyable.py,sha256=C7ycTQxqanxT0SmXhzy5OLp7NpZdNWHyokozdoVDGNA,1897
 biotite/__init__.py,sha256=rL8ZyaCUjOrECEvRxyHj8MOMp4FHMJ8n6KKgrYf5OAQ,545
 biotite/visualize.py,sha256=EYUBKgeNrkPI53f7L4T893NMmLWgBp07aO2XFcdpYTU,10012
 biotite/file.py,sha256=TQLcN1FzEbEEOLdR0RUfHr9WPIkmULifHG_LoEWZV3w,6524
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 biotite/database/error.py,sha256=3xyutl2nPzgBZqe5fpejOp6AQXAvtxO2hy_oWRrlcKI,410
 biotite/database/__init__.py,sha256=C_7zQxecZAB_x-4F_3JtU86TnB2GuxQju2mwfnLLy1M,725
 biotite/database/entrez/check.py,sha256=5ITmnDoV6-lmfxux-HpXCUjcnI0dyYBwr-mqGkIb5e0,1853
@@ -11,30 +16,30 @@ biotite/database/entrez/key.py,sha256=JS9GxvUMSYYmb2wU5uQduKUjITXRfY62aFyUH7_OMT
 biotite/database/entrez/download.py,sha256=RsB1xgcVSY_fjM1v2CMGwjImWG5e5qFg4_pttdgBxq4,7376
 biotite/database/entrez/__init__.py,sha256=-hAxLc_DdszhiCj6OO_jgSY-xmD05rC4urdUNHusr4s,388
 biotite/database/entrez/dbnames.py,sha256=57WUYPlTtPRne74fypNgFnE0cl91_WSRwzkoQsGjR6Q,2620
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+biotite/database/uniprot/query.py,sha256=XZHNAARmrJP2zDVrdL3kmRl-LK_rTPweIGseBogCcqU,7551
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 biotite/database/uniprot/__init__.py,sha256=Lsk5Jd-qb5167VTgN48lWSSbqpjCM-fD0XKJyxaZb7o,334
 biotite/database/pubchem/error.py,sha256=_-SE2w-Jx5HqL8ll5deiaXAKAeEPC0ysSG6F3Mm8AGA,713
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 biotite/application/webapp.py,sha256=ysKcsdAPlOZVMq3aCHVD8VdGyrrFjEDklMre6aytSTs,2161
 biotite/application/__init__.py,sha256=gOy5iGp5uuKTd0qpR9LgsmanB3ZfdQaTnZcKMRDwSx8,3079
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 biotite/application/dssp/__init__.py,sha256=lUf-A2rJzPLJYZQZGpZUt7HtA0M59KaX6zQSCrkhfF4,323
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 biotite/application/viennarna/rnaalifold.py,sha256=DmsHVi18izXS0ee6FN6MfgrCEScw9v9qSvkGOjHs8IU,10608
 biotite/application/viennarna/util.py,sha256=4jvZRRBSxPHzT9HJ9jooUzarUg5JTzDMoQASuBvTSqI,2634
 biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
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 biotite/application/viennarna/rnafold.py,sha256=Tr6VfGLkzNhcGujND_k5XUb9uYAMsysnDWQ6oTcIamE,7910
 biotite/application/sra/__init__.py,sha256=8I-uPkWUiu_ePPp56mI8MkwIOnjjQODpH0YMeOh8Leg,553
 biotite/application/sra/app.py,sha256=llsaWNJJaZpvTL1AOl4xWOdsv84AmQaT5LRnWqGii4Q,15864
@@ -49,20 +54,20 @@ biotite/application/mafft/__init__.py,sha256=VQPqkbQPAvGePLTb-Kgd1exMxDT5onbab34
 biotite/application/mafft/app.py,sha256=gzcJZdUs5Qys0aK1uAcsMNrBB4sIjbju4Sc1hJ3JPh4,3281
 biotite/application/clustalo/__init__.py,sha256=nHtEaPTQU3oXfZZhe9TyA55NzFknFyAkALLuEn-C6ys,326
 biotite/application/clustalo/app.py,sha256=JdICuA14SHdiuYPt6Y1cc1d6zHTNZaXzoPk_y0Nb5H0,7417
-biotite/application/muscle/app3.py,sha256=-T6AmkGlBE0EAxp3ZG--tvcxUVBTkBdr7W5qzUrDTXE,8085
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 biotite/application/muscle/__init__.py,sha256=B1JrhQYjgwSKWxpcYgXS91f2GM5Tc1i9Ocs2wElslRs,338
-biotite/application/muscle/app5.py,sha256=cjK26uAcL3dblyxa8WzfJE8FXzo3FZ0p5jn8ttu8YNc,4426
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 biotite/sequence/annotation.py,sha256=b0A1_NciOz2g3PEG0AgIcNC5XXmHap2PScbIpyKO0v8,29513
 biotite/sequence/codec.pyx,sha256=ed415FTMBJfiI9WbgKRFO3tF1f_SpRHxyEafLxW-g1k,4962
 biotite/sequence/sequence.py,sha256=6k2WVEd4JX4pnTQ-nbtrhvLBCVEaTpsETfsiCBD5Cfk,11693
-biotite/sequence/profile.py,sha256=VtRfHP3f4Ymw7tgV5wPvde22nH1KwOkkKXToHLkbl5Q,17126
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 biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
 biotite/sequence/__init__.py,sha256=fSWhobaPGRMJI6-8UYFpjguxVtP4O4cAHmiRxNAGzYI,3423
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 biotite/sequence/codon.py,sha256=6SBjwz4c6IZiAFZL03qjcrjT84zczltc14haOOAkm6Q,16392
 biotite/sequence/search.py,sha256=dF-OtPocZ5XAIgS4GCMt2YOKz0Oxb9b8FvPmVUY8j-k,3089
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 biotite/sequence/io/__init__.py,sha256=4K13uxFWe8IpNC8yuVxjDiI7-8lmXu7qT6iMmVSqPs4,314
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@@ -79,36 +84,36 @@ biotite/sequence/io/genbank/file.py,sha256=UQDvUUqftl7g5mMHPVrhzNzZEai8fmKDXlTfB
 biotite/sequence/io/fastq/convert.py,sha256=x4rWn7WHdKxW1u7mwDgM8Z3qaML4lAO7r-JiMTQbvaI,3632
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 biotite/sequence/align/permutation.pyx,sha256=xbbw5DJ7c5SXnuSUl2hJUMxzvinKP1Khc7CSdH5cEE0,10028
 biotite/sequence/align/selector.pyx,sha256=13MYCmECOYFGoMQHgCRgKKeN74VOUSc0TnZuqRJhBo0,33471
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 biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
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 biotite/sequence/align/cigar.py,sha256=HGHelQe2SH4SdKjcyTmVlvrlllFzDtpiysskFcclIW4,14285
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 biotite/sequence/align/kmersimilarity.pyx,sha256=EBpz8R_fofRd4gsmBJLuH2qZgMWKlzQkCJ54w_-K7gQ,8433
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 biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
 biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
 biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
@@ -122,6 +127,7 @@ biotite/sequence/align/matrix_data/PAM410.mat,sha256=gtd1bfoNX8M8Ey4B266w7AyTVi0
 biotite/sequence/align/matrix_data/PAM50.mat,sha256=L3wZ938pS5_dWww1UAITFNql0NaDyIDk4NrCK9Yz9Ww,2666
 biotite/sequence/align/matrix_data/GONNET.mat,sha256=xNJHqcmqSFtO1fFCL7Q1rhr-MVsjPLi6yMmXJLQSUTU,1679
 biotite/sequence/align/matrix_data/PAM90.mat,sha256=e-zxoVFQHxDoHT2_83SgzRnY88tT7_q8lg6Ikk3ioXs,2666
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 biotite/sequence/align/matrix_data/BLOSUM35.mat,sha256=wt6Gkbx6KPazNoRXfedE-yXjH6Par0PXiVpFprenJGU,2122
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 biotite/sequence/align/matrix_data/PAM200.mat,sha256=BUDVdPGRgVgxH552pwFA2WkO5QpM1gLLu6cgMiNhprs,2067
@@ -179,6 +185,8 @@ biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat,sha256=GUiQ63AMTP91d5poXh
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 biotite/sequence/align/matrix_data/DAYHOFF.mat,sha256=qYkUgQ37EYTawAjc52vbPNJOfC9LYo_vmuX-Arsa2mg,2081
 biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat,sha256=mPlyPQkz3RID3iT4XxYMDmyLfEya7sCV6t5BGdg665I,1850
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 biotite/sequence/align/matrix_data/PAM350.mat,sha256=gGMAQ5oeI29qv2GkXcg4NBvueP0ylj1CBPj4J1W7Wkg,2669
 biotite/sequence/align/matrix_data/PAM150.mat,sha256=1Jbj7ITgahFFbjGbD3dS0WXrYL2HmSYj9_6ITsgNSWQ,2067
@@ -204,7 +212,7 @@ biotite/sequence/graphics/features.py,sha256=HzS434k_kKrd7hzCQlPeQH3_YQg3Y3fRx2k
 biotite/sequence/graphics/plasmid.py,sha256=_cP1pHLzWgS66UIhMSAuWD5JWP0SmBzWjPBJxHgR3Fc,26002
 biotite/sequence/graphics/dendrogram.py,sha256=11BkMkXQFCZY-OC2mTnhfiS53RLtH_Gz38tMYDAx-To,7592
 biotite/sequence/graphics/logo.py,sha256=6xhkspwu2Mbjo9aabw0gXgbcNqOdB9tw4IzPYMgzo0Y,3819
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 biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json,sha256=FTwFLJ049NH4CFS0B5OaXtmySkE6yiluenixoNSaZSM,785
 biotite/sequence/graphics/color_schemes/rainbow_protein.json,sha256=C5imi4gVjtS0HVV6yQK3MOgNuOi1SPCnGDHiYqqbaU4,753
 biotite/sequence/graphics/color_schemes/wither.json,sha256=6dq-9koLqk6ec5WCLYzFRcnjmIYjjnLfnecZwMur3yw,842
@@ -218,44 +226,45 @@ biotite/sequence/graphics/color_schemes/jalview_taylor.json,sha256=q9GXPg8OaeE6S
 biotite/sequence/graphics/color_schemes/jalview_prop_helix.json,sha256=mZrFbuArC56OOtdxZ0m3hQs35RTR0sCATgbaq5DfsYM,780
 biotite/sequence/graphics/color_schemes/rainbow_dna.json,sha256=xG5qNN6Zov99pgEkna2jws7Vdp5cfYhKaUaPkyq9Nzw,248
 biotite/sequence/graphics/color_schemes/sunset.json,sha256=HnKftW6Mv52-fhqgIElQV0yW8cYMqtksPShG12zW7Is,842
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 biotite/sequence/graphics/color_schemes/blossom.json,sha256=NneinRHISSkgrdCDtaxNCCaF6-9Ya_9PlKKKR6LweXc,843
 biotite/sequence/graphics/color_schemes/jalview_prop_strand.json,sha256=83GsLW_LOC4156kX4hVXUa4LUmoJm9FhOgyXrmXOR-E,781
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 biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9CILWaiY3QkB35wYEq2kbWEDqYjm-4,701
 biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
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@@ -271,18 +280,19 @@ biotite/structure/io/dcd/__init__.py,sha256=tYiiTSmqDrsSgg_sZaoQgx2D8N9OeqlooxH4
 biotite/structure/io/dcd/file.py,sha256=jaU81fvGl4WG0zXB1dBKTOtSvFF3fS0kxeNR-wwpXlY,2224
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 biotite/structure/io/trr/file.py,sha256=2LjaLoKYfNgyQGSEfQ1TdZQqaPyrBh3irbJdmEKFTMI,1235
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biotite/structure/info/ccd/README.rst

@@ -1,8 +0,0 @@
-These files are based on the
-`Chemical Component Dictionary <https://www.wwpdb.org/data/ccd>`_
-and were created using ``setup_ccd.py``.
-
-To keep the size of the repository small, the original commit should be
-rewritten, if the formats of the affected files are compatible with the
-original ones.
-The name of the commit is ``Add CCD dataset``.