biotite 1.0.0__cp311-cp311-macosx_11_0_arm64.whl → 1.1.0__cp311-cp311-macosx_11_0_arm64.whl

{biotite-1.0.0.dist-info → biotite-1.1.0.dist-info}/RECORD

@@ -1,12 +1,13 @@
-biotite-1.0.0.dist-info/RECORD,,
-biotite-1.0.0.dist-info/WHEEL,sha256=FADWsAbCknuFYRiPIqUqs7TwHvSgFIOpRdMEMMJW_gY,105
-biotite-1.0.0.dist-info/METADATA,sha256=C6tIVbg8HfB-DgcNYsM7sb56iNpH-n4EulEWtL_-2fQ,7111
-biotite-1.0.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
-biotite/version.py,sha256=DGJ4pj32xs3_DRJhSzQwCiRNnAQrMgo09USYpyMZsKc,411
+biotite-1.1.0.dist-info/RECORD,,
+biotite-1.1.0.dist-info/WHEEL,sha256=FADWsAbCknuFYRiPIqUqs7TwHvSgFIOpRdMEMMJW_gY,105
+biotite-1.1.0.dist-info/METADATA,sha256=AWoJEvD_xouBG2_P5lKh-FPZOZQ9C12cRsO8GsBMBfE,7224
+biotite-1.1.0.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
+biotite/version.py,sha256=CqDGE4B1ZqZ-56mxeOFcXRTmlxrdOh4ayrjbcPjziE4,411
 biotite/copyable.py,sha256=C7ycTQxqanxT0SmXhzy5OLp7NpZdNWHyokozdoVDGNA,1897
 biotite/__init__.py,sha256=rL8ZyaCUjOrECEvRxyHj8MOMp4FHMJ8n6KKgrYf5OAQ,545
 biotite/visualize.py,sha256=EYUBKgeNrkPI53f7L4T893NMmLWgBp07aO2XFcdpYTU,10012
 biotite/file.py,sha256=TQLcN1FzEbEEOLdR0RUfHr9WPIkmULifHG_LoEWZV3w,6524
+biotite/setup_ccd.py,sha256=sWHyRm78imJybCzPu_W-gKR_itxrVwEEGJxMq6YlzIE,6051
 biotite/database/error.py,sha256=3xyutl2nPzgBZqe5fpejOp6AQXAvtxO2hy_oWRrlcKI,410
 biotite/database/__init__.py,sha256=C_7zQxecZAB_x-4F_3JtU86TnB2GuxQju2mwfnLLy1M,725
 biotite/database/entrez/check.py,sha256=5ITmnDoV6-lmfxux-HpXCUjcnI0dyYBwr-mqGkIb5e0,1853
@@ -15,30 +16,30 @@ biotite/database/entrez/key.py,sha256=JS9GxvUMSYYmb2wU5uQduKUjITXRfY62aFyUH7_OMT
 biotite/database/entrez/download.py,sha256=RsB1xgcVSY_fjM1v2CMGwjImWG5e5qFg4_pttdgBxq4,7376
 biotite/database/entrez/__init__.py,sha256=-hAxLc_DdszhiCj6OO_jgSY-xmD05rC4urdUNHusr4s,388
 biotite/database/entrez/dbnames.py,sha256=57WUYPlTtPRne74fypNgFnE0cl91_WSRwzkoQsGjR6Q,2620
-biotite/database/uniprot/check.py,sha256=7ShClNBBHZkKw09Cewl4drr4C0we7oFGJGHBbgINt50,1292
-biotite/database/uniprot/query.py,sha256=dXjrBTeqpfrVOSoHVN4vdbZYR4ZtNvZTf0v_WfVwi4k,7563
-biotite/database/uniprot/download.py,sha256=MZan2nFyYWSWgFL-VU3MOJOwp6g9h25_65zFfBr-Kww,4320
+biotite/database/uniprot/check.py,sha256=TJeIGnPGVOEXrvn4V4EIJs0NEXnvWDfXDAgZzSs2evY,1373
+biotite/database/uniprot/query.py,sha256=XZHNAARmrJP2zDVrdL3kmRl-LK_rTPweIGseBogCcqU,7551
+biotite/database/uniprot/download.py,sha256=HmWrYpNzpSvGGZP26xk0nzAv4fwzhA8mDZ4moexWgc4,4308
 biotite/database/uniprot/__init__.py,sha256=Lsk5Jd-qb5167VTgN48lWSSbqpjCM-fD0XKJyxaZb7o,334
 biotite/database/pubchem/error.py,sha256=_-SE2w-Jx5HqL8ll5deiaXAKAeEPC0ysSG6F3Mm8AGA,713
 biotite/database/pubchem/query.py,sha256=czvfK8KttZQviw65NsdYFqt-IECW77cN6TrocU7d8oA,26448
 biotite/database/pubchem/download.py,sha256=5Se2dU0jB0MPrfCfwuwDDUgO_k7BkRqegDl9c_76IGw,9867
 biotite/database/pubchem/__init__.py,sha256=xjwfutIL4-JeTs7v4wCkRyy5q4KE7fGWDvo46ubkXt4,669
 biotite/database/pubchem/throttle.py,sha256=HXf2l7EW5RLdW0bg72uSdXCDZXFXOE49akhfgKhEdc8,3286
-biotite/database/rcsb/query.py,sha256=ztyNlUs72vwjdG3Ci1Mj6UTJb9yupcRray8pYogPbw8,32902
+biotite/database/rcsb/query.py,sha256=DAXZJbI8lUey80MuA1QNetqv3MgqaAaY3jM9MhrjrTg,32919
 biotite/database/rcsb/download.py,sha256=8q0yA5LL9avzWpy1I6s-59VRHg3mhuJltIldEN5CmU0,5622
 biotite/database/rcsb/__init__.py,sha256=sTJnL4vYwhO7gSszMuT_Lr91uwX0wM1h-fZWiZkITYA,332
-biotite/application/util.py,sha256=zDxqVUWcINdTgnLMdC004GXygIUeYWSemwEALk8xrGo,2095
-biotite/application/localapp.py,sha256=uvktgVp67gAyus4LR6dXjEc23y8M5n_K5e-ncWzwx-c,9286
+biotite/application/util.py,sha256=8iReyUmCizsbhkUv1t5QKx5tH9M101ebKy4EnviP2v4,2111
+biotite/application/localapp.py,sha256=JeiqQxP9JgV_kCaYXi14I_cfsxZZDEieymNaN_5sKqw,10270
 biotite/application/webapp.py,sha256=ysKcsdAPlOZVMq3aCHVD8VdGyrrFjEDklMre6aytSTs,2161
 biotite/application/__init__.py,sha256=gOy5iGp5uuKTd0qpR9LgsmanB3ZfdQaTnZcKMRDwSx8,3079
 biotite/application/application.py,sha256=KbrqhjBLtkjEix0puJ9VpLQoc3vs4hQZ1kW5O1c55vw,8098
 biotite/application/msaapp.py,sha256=hDoyPyDjJVt0qQSZLlR7DLSA0uJ3qTmAke-dP725_ik,11976
 biotite/application/dssp/__init__.py,sha256=lUf-A2rJzPLJYZQZGpZUt7HtA0M59KaX6zQSCrkhfF4,323
-biotite/application/dssp/app.py,sha256=zhuHcUihTz9b9iOcYJ8ROAPYu-_0gW61d5fEXle2fHI,4840
+biotite/application/dssp/app.py,sha256=tHoG8uFmX8WaBHm0Fhjc7D0NXEaMa-zkLvwFzyP4FQk,5323
 biotite/application/viennarna/rnaalifold.py,sha256=DmsHVi18izXS0ee6FN6MfgrCEScw9v9qSvkGOjHs8IU,10608
 biotite/application/viennarna/util.py,sha256=4jvZRRBSxPHzT9HJ9jooUzarUg5JTzDMoQASuBvTSqI,2634
 biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
-biotite/application/viennarna/rnaplot.py,sha256=IPZ-AOMwblQHoF1Y6xBtN84RqWfDMkMpn8Kiws-7w4E,6327
+biotite/application/viennarna/rnaplot.py,sha256=Z8TdKvd3mYAdUOdPLdsY10aeHVDsoXKJxsiChWkfjy8,6416
 biotite/application/viennarna/rnafold.py,sha256=Tr6VfGLkzNhcGujND_k5XUb9uYAMsysnDWQ6oTcIamE,7910
 biotite/application/sra/__init__.py,sha256=8I-uPkWUiu_ePPp56mI8MkwIOnjjQODpH0YMeOh8Leg,553
 biotite/application/sra/app.py,sha256=llsaWNJJaZpvTL1AOl4xWOdsv84AmQaT5LRnWqGii4Q,15864
@@ -53,20 +54,20 @@ biotite/application/mafft/__init__.py,sha256=VQPqkbQPAvGePLTb-Kgd1exMxDT5onbab34
 biotite/application/mafft/app.py,sha256=gzcJZdUs5Qys0aK1uAcsMNrBB4sIjbju4Sc1hJ3JPh4,3281
 biotite/application/clustalo/__init__.py,sha256=nHtEaPTQU3oXfZZhe9TyA55NzFknFyAkALLuEn-C6ys,326
 biotite/application/clustalo/app.py,sha256=JdICuA14SHdiuYPt6Y1cc1d6zHTNZaXzoPk_y0Nb5H0,7417
-biotite/application/muscle/app3.py,sha256=-T6AmkGlBE0EAxp3ZG--tvcxUVBTkBdr7W5qzUrDTXE,8085
+biotite/application/muscle/app3.py,sha256=C-W7MOHjwfb4ioKtVeVSAOD9sbO58bCdG8rRhy_vxzU,7613
 biotite/application/muscle/__init__.py,sha256=B1JrhQYjgwSKWxpcYgXS91f2GM5Tc1i9Ocs2wElslRs,338
-biotite/application/muscle/app5.py,sha256=cjK26uAcL3dblyxa8WzfJE8FXzo3FZ0p5jn8ttu8YNc,4426
-biotite/sequence/codec.cpython-311-darwin.so,sha256=Si8UZ1W2yU9-g3wNAWoLvr2HsetnokAsAnYRNZSlWcg,285816
+biotite/application/muscle/app5.py,sha256=9h7kszwf0cr_z9xaWsMi2UKxYMK8Fwo_5sGyGTvmoN8,4435
+biotite/sequence/codec.cpython-311-darwin.so,sha256=tm4srsqNWSyuZpenNcHllNaqohVrMJ1CYtK8jhCtBVI,285816
 biotite/sequence/annotation.py,sha256=b0A1_NciOz2g3PEG0AgIcNC5XXmHap2PScbIpyKO0v8,29513
 biotite/sequence/codec.pyx,sha256=ed415FTMBJfiI9WbgKRFO3tF1f_SpRHxyEafLxW-g1k,4962
 biotite/sequence/sequence.py,sha256=6k2WVEd4JX4pnTQ-nbtrhvLBCVEaTpsETfsiCBD5Cfk,11693
-biotite/sequence/profile.py,sha256=VtRfHP3f4Ymw7tgV5wPvde22nH1KwOkkKXToHLkbl5Q,17126
+biotite/sequence/profile.py,sha256=ZiCilbHx43SYvm9bDkoHDu5_-V3T5xllRZw26pTmZ-E,19375
 biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
 biotite/sequence/__init__.py,sha256=fSWhobaPGRMJI6-8UYFpjguxVtP4O4cAHmiRxNAGzYI,3423
-biotite/sequence/seqtypes.py,sha256=zdj3fFkb_EDB0T4rqQuq-ErtX6TcFiP8kZ0tWINibnI,19346
+biotite/sequence/seqtypes.py,sha256=OvOOhWzoRCXpgXM2is6T06RV9etxLeFoLErokWuc60c,23093
 biotite/sequence/codon.py,sha256=6SBjwz4c6IZiAFZL03qjcrjT84zczltc14haOOAkm6Q,16392
 biotite/sequence/search.py,sha256=dF-OtPocZ5XAIgS4GCMt2YOKz0Oxb9b8FvPmVUY8j-k,3089
-biotite/sequence/alphabet.py,sha256=OiUxnsbTaxuDjAiB96sVHYTOqG3XvwF5ceJ3tvViqh4,17190
+biotite/sequence/alphabet.py,sha256=IqZnJZtUku9HPcRwx8ta7dRaK7knmoNW1quMcf-2ZAs,17245
 biotite/sequence/io/__init__.py,sha256=4K13uxFWe8IpNC8yuVxjDiI7-8lmXu7qT6iMmVSqPs4,314
 biotite/sequence/io/general.py,sha256=sD03pLnkxsT6vFh8806ZhErC8GEG3LF_70NMcVJyGe0,6694
 biotite/sequence/io/fasta/convert.py,sha256=m1uWLtCfdzI-to5WLxqiQrQKtWKBDyr14qE_54x0jLk,9421
@@ -83,36 +84,36 @@ biotite/sequence/io/genbank/file.py,sha256=UQDvUUqftl7g5mMHPVrhzNzZEai8fmKDXlTfB
 biotite/sequence/io/fastq/convert.py,sha256=x4rWn7WHdKxW1u7mwDgM8Z3qaML4lAO7r-JiMTQbvaI,3632
 biotite/sequence/io/fastq/__init__.py,sha256=lhw9bxWS0eKPXzF1lg8fvrNmgAmJPLBzIB6jEP5GOVI,588
 biotite/sequence/io/fastq/file.py,sha256=OwSUw-Unp8AQc7LdpJSI2zmavBWsCcqov23HPHWaXQU,17816
-biotite/sequence/align/selector.cpython-311-darwin.so,sha256=OYbpg_Sy3F18iDNtnKDUXoIrBpftouKmFwIWzHhQfo8,331120
-biotite/sequence/align/matrix.py,sha256=6N0b6j1MOBrFMnSdX83sWZqGH0e5_dFfIVEhGglbSBI,12720
+biotite/sequence/align/selector.cpython-311-darwin.so,sha256=h9WYUPm3M4wuVurHZkaK7EDmmuJB512sTrBkeJ91Dws,331120
+biotite/sequence/align/matrix.py,sha256=XQAdUhlA5suO9MkPhGeqXMcfxB-nD71Sybk1P_ySVP4,22103
 biotite/sequence/align/permutation.pyx,sha256=xbbw5DJ7c5SXnuSUl2hJUMxzvinKP1Khc7CSdH5cEE0,10028
 biotite/sequence/align/selector.pyx,sha256=13MYCmECOYFGoMQHgCRgKKeN74VOUSc0TnZuqRJhBo0,33471
-biotite/sequence/align/kmeralphabet.cpython-311-darwin.so,sha256=tJ6O2S7r8mhgF5l4gtbfFaBusSLRopvu4BJlGjqaY8g,395440
+biotite/sequence/align/kmeralphabet.cpython-311-darwin.so,sha256=HLcEe9o_9VsCSPTvng335V68zfb_-CasKHA86mbnnh4,420032
 biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
-biotite/sequence/align/kmeralphabet.pyx,sha256=J8I33f6AT8vhCNeW7tuZERqbCCC7Z9baC0RCrF01_zk,18115
-biotite/sequence/align/kmertable.cpython-311-darwin.so,sha256=i4NC0DOz8u0rx8xoT3A8MpKGSJ8o5R60VJ3vV95yIfw,727968
-biotite/sequence/align/alignment.py,sha256=XxFE0tdH37oiWcxfcbPYt25d2S3MePan7RY6fl8noP0,21351
-biotite/sequence/align/kmersimilarity.cpython-311-darwin.so,sha256=wpizNCy9jONKpy34U5G1d70bU7M50f5m7_MbM8OuDUQ,232440
+biotite/sequence/align/kmeralphabet.pyx,sha256=h21N8B1KwTHPYz0KzyM2pYuap4hDCQPfNSnqpuhJn7Q,18636
+biotite/sequence/align/kmertable.cpython-311-darwin.so,sha256=saAxq4hatQRurdtzuvj9p4CmCIr1vK2B5V9GDfzo7I4,728560
+biotite/sequence/align/alignment.py,sha256=Ccz-Dzo76PeNoBVLNymxf4YTgo0EelSyGTfRXkGrbdg,21693
+biotite/sequence/align/kmersimilarity.cpython-311-darwin.so,sha256=OQt2LRlOBaI1Sp1vR-dwc2SIC_5RzMGpDMViwVJWmgQ,232440
 biotite/sequence/align/tracetable.pyx,sha256=1gsT3OV7VkE6i_UpNiYOLVvD2_tfJgbNZb1yv9F4XR8,15455
 biotite/sequence/align/pairwise.pyx,sha256=88bZUcDG3CflZPdUN_HMJaIMTKCAtBhmhq946tY__KE,22836
 biotite/sequence/align/__init__.py,sha256=Twwj35DdxgKu9pN84u2PEtwo6MekLENbkaGbAPxB2A4,4715
-biotite/sequence/align/tracetable.cpython-311-darwin.so,sha256=34b4m3mxJ9ZtfpMHNf7gLHiLMf9ru4a05y6-HJgD5hw,204496
+biotite/sequence/align/tracetable.cpython-311-darwin.so,sha256=r4ST8fNU4fQ-GOPhAT70VHmDdHfqD9dyCelC1wvfCfc,204496
 biotite/sequence/align/localungapped.pyx,sha256=rj6gbuyLQIo6ZuPwVt01rs3fOSOjpzq6Vx3v6_zKdEQ,9696
 biotite/sequence/align/buckets.py,sha256=k8H5RBS5Y7DrMoIOd5Ifrxp-nYWosJuqOYgLd1y-DWs,2464
-biotite/sequence/align/multiple.cpython-311-darwin.so,sha256=koY0ma3AHrLXo1sqsUSVMM9JNm0GbAmB64genxi5QOM,503104
+biotite/sequence/align/multiple.cpython-311-darwin.so,sha256=a3Vfyt9iKh-eJDmd6zdWimV8oOmMbBY5wwMqdX2t2E4,503104
 biotite/sequence/align/localgapped.pyx,sha256=djdmgvACXde0dyqbKttc4itgu0MNh7aF0U9L6tHTZXM,33385
-biotite/sequence/align/permutation.cpython-311-darwin.so,sha256=a__pMKIsH9ZlpcL2PkdQ5QObNVogrBsk_j2LDjIzYkI,236400
+biotite/sequence/align/permutation.cpython-311-darwin.so,sha256=SmqgG0Aj37TUo0L5GN5oEGJNS5zR8fB-hiRwMljOlJc,236400
 biotite/sequence/align/cigar.py,sha256=HGHelQe2SH4SdKjcyTmVlvrlllFzDtpiysskFcclIW4,14285
 biotite/sequence/align/tracetable.pxd,sha256=_VP1ayP6FZL1Tzn1pCCbt6xPZDzFtE9bH0Gvop2lxyQ,2825
-biotite/sequence/align/kmertable.pyx,sha256=6f-ifIWbICKP_ZAItxPqgjQVBoyId5bT2g6-dIO0zS4,121334
+biotite/sequence/align/kmertable.pyx,sha256=60fHpaQm21cTvvO6RepnzO43gouRyVEZ1nQu3oJHaAU,121697
 biotite/sequence/align/multiple.pyx,sha256=cUnbuAfYBp_Kt4Y7LeuPeuBiRdyu1D694i1kQIsUqPM,21965
 biotite/sequence/align/statistics.py,sha256=98Vaz__s_8GltcMwfErNuKQfXuFKZCq-i1XWkJ_iAMQ,9655
-biotite/sequence/align/banded.pyx,sha256=-5peQOsZHoe27GjZCWrlrVN6YxsCEQCn0HkpglxDsbU,25392
-biotite/sequence/align/pairwise.cpython-311-darwin.so,sha256=eAnkfUht2_YP1rdd3Lj3GEE6LSv01-sIulI7PyFhkoE,578352
-biotite/sequence/align/banded.cpython-311-darwin.so,sha256=35IuLDwJlY86lms6S16gvHfKLwY9bgfwSFi88eIOs7g,524784
+biotite/sequence/align/banded.pyx,sha256=IoC59rBadaLdO3LFMoU6mHu7MX4Ri-PkMcd-sFHn2Po,25393
+biotite/sequence/align/pairwise.cpython-311-darwin.so,sha256=pgoFYWhrSNaCr0-q3E3XagaK4gPRHjGG_OpjgjCQc-w,578352
+biotite/sequence/align/banded.cpython-311-darwin.so,sha256=SlCloyLbtGwCLaEUuLBgxKviHewU6UPnKu_TvXNR3iI,524784
 biotite/sequence/align/kmersimilarity.pyx,sha256=EBpz8R_fofRd4gsmBJLuH2qZgMWKlzQkCJ54w_-K7gQ,8433
-biotite/sequence/align/localgapped.cpython-311-darwin.so,sha256=QYK6zqlf00AgA0QNN1JXatYQ8jUFBB-h3ewl-4dt_9M,1184768
-biotite/sequence/align/localungapped.cpython-311-darwin.so,sha256=94Nn_UJxEg1bvm2fF1QMu18yokZb4Es_2sIIJVBIxpg,306320
+biotite/sequence/align/localgapped.cpython-311-darwin.so,sha256=Z3KWTaMBU5cTWg0AP83jwCPU1gmYjglgLD1SFCOgTuw,1184768
+biotite/sequence/align/localungapped.cpython-311-darwin.so,sha256=K8Ta6FxKWUwF0o0nPn3yGuOxXEVK8U07NNCOdquzmHU,306320
 biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
 biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
 biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
@@ -126,6 +127,7 @@ biotite/sequence/align/matrix_data/PAM410.mat,sha256=gtd1bfoNX8M8Ey4B266w7AyTVi0
 biotite/sequence/align/matrix_data/PAM50.mat,sha256=L3wZ938pS5_dWww1UAITFNql0NaDyIDk4NrCK9Yz9Ww,2666
 biotite/sequence/align/matrix_data/GONNET.mat,sha256=xNJHqcmqSFtO1fFCL7Q1rhr-MVsjPLi6yMmXJLQSUTU,1679
 biotite/sequence/align/matrix_data/PAM90.mat,sha256=e-zxoVFQHxDoHT2_83SgzRnY88tT7_q8lg6Ikk3ioXs,2666
+biotite/sequence/align/matrix_data/3Di.mat,sha256=vOp0H-cCTJC3puTPYU63e2ymGVvVNEdhnqzV4jQPJWo,2021
 biotite/sequence/align/matrix_data/BLOSUM35.mat,sha256=wt6Gkbx6KPazNoRXfedE-yXjH6Par0PXiVpFprenJGU,2122
 biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat,sha256=WvizmTK3QOPODABlz6_X8YT4KgvMZKy_0PkbOthDpjA,1850
 biotite/sequence/align/matrix_data/PAM200.mat,sha256=BUDVdPGRgVgxH552pwFA2WkO5QpM1gLLu6cgMiNhprs,2067
@@ -183,6 +185,8 @@ biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat,sha256=GUiQ63AMTP91d5poXh
 biotite/sequence/align/matrix_data/PAM190.mat,sha256=h-CbsySNQqW2YCS67ptA5CktzqP6hRqvud6dXXYnvVg,2067
 biotite/sequence/align/matrix_data/DAYHOFF.mat,sha256=qYkUgQ37EYTawAjc52vbPNJOfC9LYo_vmuX-Arsa2mg,2081
 biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat,sha256=mPlyPQkz3RID3iT4XxYMDmyLfEya7sCV6t5BGdg665I,1850
+biotite/sequence/align/matrix_data/PB.license,sha256=OkDCfXO06BfooLXYC3iF7LXXB_Uqqex1B2gjUEFdUZI,1091
+biotite/sequence/align/matrix_data/PB.mat,sha256=1T1JxAckzd9oXRSXe09M6mYp-gjOhxeh0d8UMrt4dv4,1694
 biotite/sequence/align/matrix_data/PAM230.mat,sha256=kpdHawONOvHXHJgUnkPMFRikSyqjtU1Rucp_foRV6Jc,2068
 biotite/sequence/align/matrix_data/PAM350.mat,sha256=gGMAQ5oeI29qv2GkXcg4NBvueP0ylj1CBPj4J1W7Wkg,2669
 biotite/sequence/align/matrix_data/PAM150.mat,sha256=1Jbj7ITgahFFbjGbD3dS0WXrYL2HmSYj9_6ITsgNSWQ,2067
@@ -208,7 +212,7 @@ biotite/sequence/graphics/features.py,sha256=HzS434k_kKrd7hzCQlPeQH3_YQg3Y3fRx2k
 biotite/sequence/graphics/plasmid.py,sha256=_cP1pHLzWgS66UIhMSAuWD5JWP0SmBzWjPBJxHgR3Fc,26002
 biotite/sequence/graphics/dendrogram.py,sha256=11BkMkXQFCZY-OC2mTnhfiS53RLtH_Gz38tMYDAx-To,7592
 biotite/sequence/graphics/logo.py,sha256=6xhkspwu2Mbjo9aabw0gXgbcNqOdB9tw4IzPYMgzo0Y,3819
-biotite/sequence/graphics/colorschemes.py,sha256=nWibKN0L-NQkVCnj3Psx0SX6Zv1hpDZeb-NLTOZO3o0,4473
+biotite/sequence/graphics/colorschemes.py,sha256=GvmyxoEyYFOFwK2zM_DXM8RPecEDGhalOVinR7BdQ_Q,5517
 biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json,sha256=FTwFLJ049NH4CFS0B5OaXtmySkE6yiluenixoNSaZSM,785
 biotite/sequence/graphics/color_schemes/rainbow_protein.json,sha256=C5imi4gVjtS0HVV6yQK3MOgNuOi1SPCnGDHiYqqbaU4,753
 biotite/sequence/graphics/color_schemes/wither.json,sha256=6dq-9koLqk6ec5WCLYzFRcnjmIYjjnLfnecZwMur3yw,842
@@ -222,44 +226,45 @@ biotite/sequence/graphics/color_schemes/jalview_taylor.json,sha256=q9GXPg8OaeE6S
 biotite/sequence/graphics/color_schemes/jalview_prop_helix.json,sha256=mZrFbuArC56OOtdxZ0m3hQs35RTR0sCATgbaq5DfsYM,780
 biotite/sequence/graphics/color_schemes/rainbow_dna.json,sha256=xG5qNN6Zov99pgEkna2jws7Vdp5cfYhKaUaPkyq9Nzw,248
 biotite/sequence/graphics/color_schemes/sunset.json,sha256=HnKftW6Mv52-fhqgIElQV0yW8cYMqtksPShG12zW7Is,842
-biotite/sequence/graphics/color_schemes/pb_flower.json,sha256=43xTI6C5J1YDdH3gnlUgfOTeZm9gCwhy6K-YC9pRgdc,663
+biotite/sequence/graphics/color_schemes/pb_flower.json,sha256=nZRuvOdLmtSXZKNk2jZOuXV6utQAxa4oK7E36NqlYr8,676
 biotite/sequence/graphics/color_schemes/blossom.json,sha256=NneinRHISSkgrdCDtaxNCCaF6-9Ya_9PlKKKR6LweXc,843
 biotite/sequence/graphics/color_schemes/jalview_prop_strand.json,sha256=83GsLW_LOC4156kX4hVXUa4LUmoJm9FhOgyXrmXOR-E,781
 biotite/sequence/graphics/color_schemes/autumn.json,sha256=usp-Y70tk39LCJV64vi7t3wd0pcf7kOjEE8dZhAbryM,842
 biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9CILWaiY3QkB35wYEq2kbWEDqYjm-4,701
 biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
+biotite/sequence/graphics/color_schemes/3di_flower.json,sha256=wuo5hCVuc_wR9a5AviU9BXRQC8XUb90VqJCsKcpq8pc,917
 biotite/sequence/phylo/nj.pyx,sha256=s6hoo_7s3VFy-7Hgq9lKtUVXTZ-To8Dxwytk-ohfWYI,7281
-biotite/sequence/phylo/nj.cpython-311-darwin.so,sha256=B_L0rAJ3P1O9ZDpu9jN3xVDB2M2jxbtF6I_EzQf5Ejk,232584
+biotite/sequence/phylo/nj.cpython-311-darwin.so,sha256=qyTnATk8T2WMvkk74I9kMKTnLYpDW1j3AaElqhBv-6w,232584
 biotite/sequence/phylo/__init__.py,sha256=TW1CQqOa3JZYqidRy5XE8gA0HuzA8zo2Iouit3wSsBM,1261
 biotite/sequence/phylo/upgma.pyx,sha256=86QxGjj8fcGRhze7vZfqw8JLjLAZUevhkWDmzTy357E,5213
 biotite/sequence/phylo/tree.pyx,sha256=4e4Bhlm1qWY0Wvj6JqDE9jVwP6lEUmE8lIHEUmRNLwU,39206
-biotite/sequence/phylo/tree.cpython-311-darwin.so,sha256=MpcQiDZa9-__fU_nasuioj2lfjdP_o70WOh6EF9t74I,287832
-biotite/sequence/phylo/upgma.cpython-311-darwin.so,sha256=j2gINKj712fggyCxUCjdJMDMcDI77Rexwrjv7yVO1mQ,212680
+biotite/sequence/phylo/tree.cpython-311-darwin.so,sha256=6kmFR2zceDdMPL2kbQ4FTBo8eDi4Zvv9RFAxaCr558U,287832
+biotite/sequence/phylo/upgma.cpython-311-darwin.so,sha256=X9Fe1vggJbg6J0ga3n9wq37gvQkHRd97RAO3WlVrUu4,212680
 biotite/structure/repair.py,sha256=-1orK6q9tRNy36GWuS8_r4_goaGiaVtJy0I1VPCao2Q,6996
 biotite/structure/superimpose.py,sha256=MvPsab-ZRdeig_SoJH3XrrOY0VteTNCnLEKNSsar0_Y,25124
-biotite/structure/sasa.cpython-311-darwin.so,sha256=FvzJaG_DTs_t3CrBqxn68BUuEMPLKVyUwaf4vXw4ypg,272408
+biotite/structure/sasa.cpython-311-darwin.so,sha256=fAezfX3cs3jBrGmnL6gCxuDMPettJ-mLVliu6Hdt9Is,272408
 biotite/structure/chains.py,sha256=I_A8JslWdBxi8cagoSGCfHddvHJ2WBSSe_WfovCwHxM,8827
 biotite/structure/box.py,sha256=6iGaGbxnsoIRt_mq727yLqU1txz7PRpA2H458Xk00Uk,18598
 biotite/structure/error.py,sha256=NI8oZfhO7oYWlcEIi025QZFD3Wjvwn6SvOn_RanrFT0,783
-biotite/structure/util.py,sha256=z-yxfc60EMJMPyEpTZ8cdl0LTb2zURrJm6xDYZUprF0,2200
-biotite/structure/segments.py,sha256=_yotEX4cr9WbxHdezLmoak5M3306PZZmPAxcO-tqSHU,5546
+biotite/structure/util.py,sha256=ywK8N5Po74uwTim2KuXOFIh5ivV0_pCc1W1oiZT_9sA,4956
+biotite/structure/segments.py,sha256=yXfzEd5X5OisJoC7m3_a0Qw4WmQErzrLlazByeATIus,5506
 biotite/structure/sequence.py,sha256=HLUaO32S_iDw2Ot1XEqQ7UtGDrxjCg30cCpzBqKpVPY,4246
 biotite/structure/sasa.pyx,sha256=fEUWuLtqjEmviPuL57lLuLdopndW-b7xtzvCr0vfQtk,12984
-biotite/structure/celllist.cpython-311-darwin.so,sha256=7x0KD3gHK0XiFJuA0kwA0WLTojNqQVDqa9uLA4FHLhA,315952
-biotite/structure/__init__.py,sha256=r2CR-UtCLVqbAygpKCri0pXD1FCe2M9wZSOi1Szp700,5324
+biotite/structure/celllist.cpython-311-darwin.so,sha256=Fe0RSOrPnfTrvLNYE1lZeN7rDk8Iif3nYJiAokQdxbQ,315952
+biotite/structure/__init__.py,sha256=VSJMdPML_2MJPcSnmfRCyAcIpFlJRN8MLrHpj7RqQQ4,5449
 biotite/structure/mechanics.py,sha256=1qzDJZ1U1T_KsxwKioYjtMTy9cGYRirtxKD5AcsaJ3E,2588
 biotite/structure/sse.py,sha256=MUdyNSaDvxGi_gaY9bQjUSVNm-W8B1oinJ-UFV7slwk,11406
-biotite/structure/bonds.cpython-311-darwin.so,sha256=G0t92v5BwgANFdMSGLra6-xJTh0rP1l1ljkFdn-r74A,591912
+biotite/structure/bonds.cpython-311-darwin.so,sha256=2LfM2NaCYGKe8rtNrxEid4rb2cyemMVTqG19RuMMb9s,593832
 biotite/structure/charges.pyx,sha256=RpCz4sVOiwmZeVTcMAapiWJFVBPAK0gAAiNoNZuxZWA,18822
 biotite/structure/density.py,sha256=BosyeB-0RGrANMpnq78A8cx_fYAOFnkcAJYxP8LKtZ0,4196
 biotite/structure/rdf.py,sha256=Yf9PoWqSpNK3QsWqnCnOUBGL8WwKGOakgZ0pxj5UOiA,8104
 biotite/structure/transform.py,sha256=uz0t7-uv3QxJEd7oe8tpcnQPt5YfoFT6CLoruxEmvpA,19649
-biotite/structure/geometry.py,sha256=nYFJxpZvtujFK-9ERBRxAl1yQSikezGVz6ZAKjoa96U,25058
-biotite/structure/molecules.py,sha256=gkOSUTkIf1csP_6vDuxBhfJjIJWx-9xf_dW6dO7vFPY,15504
-biotite/structure/filter.py,sha256=CwxFJKBGuk8TtalAjQ5WoPTFhQhgEdQmQjjTpanGIm8,17959
-biotite/structure/bonds.pyx,sha256=XYd9QtCtyqEZKGXkSQyt74oku9NVNufPmaC35BFLZX0,67996
-biotite/structure/atoms.py,sha256=bqROmImfB3W3rBIbm0z8p0Aaz5EDueQmdJarxQX6xL8,46481
-biotite/structure/charges.cpython-311-darwin.so,sha256=ch4QUNPincKApcBuCMRnCiinIzhw-fnDErIVHZLDUu4,276592
+biotite/structure/geometry.py,sha256=U7xtFwM6OTB0sjgyN3jhxPTXQn6_NmwW6ueNsdc6Zn4,23423
+biotite/structure/molecules.py,sha256=dQ1Ad7_rX8HRpEHfIhfLWq1-ydalpjwPEPHrEtDPBy4,15504
+biotite/structure/filter.py,sha256=X2Mj5_Z0_lk1LxuJudlztxuu7VkVF_ObtV_FCrXyHhg,17967
+biotite/structure/bonds.pyx,sha256=ILmU-8m_3yj_ZBMhMvS4Z5hl7hbugyDnzP20lnH6-sk,69546
+biotite/structure/atoms.py,sha256=ZcCvMUjBVGjdJuwqMrXXTjgZYQozWPRUPXvqnJyofao,50458
+biotite/structure/charges.cpython-311-darwin.so,sha256=W-IyaAZBFESKqUCqRT-6uizpyFlBP4e44yGIJwpy6bk,276592
 biotite/structure/pseudoknots.py,sha256=hHxS4IOekR8ZqYFJvuXMexM1e1kaWmdqX18zfxAL4W0,22224
 biotite/structure/basepairs.py,sha256=2qxTgl6Q1zMjvZLa331hfQzbeMwrFzvSJYAfSETnwWo,49759
 biotite/structure/integrity.py,sha256=I2gcIgCoxWsC_adSsHYvbmvCz1aSeeXvIjt8uZWxYOM,6826
@@ -268,25 +273,26 @@ biotite/structure/hbond.py,sha256=4y2FXeAXl7g2EDnwb1uDXFieGpZPQhnnkdATBechvW8,15
 biotite/structure/dotbracket.py,sha256=8S1DHu1-PRgeMHERztfOKggneVEcoUdwd0QNtcH3qI4,6834
 biotite/structure/residues.py,sha256=nYkbDjGYK6pFNJ0mZ1Hyb2ocmIOWLLnLyGi1tuhXxXk,22454
 biotite/structure/celllist.pyx,sha256=PCK5hx4QyuRrernfP_ty-w2ZRG5Qyn5dmibRwdVKXsE,34461
-biotite/structure/io/trajfile.py,sha256=eEghJscuDlYrYWPfb_Y7W-L87KhErj1UilgOMuBtRWw,25096
+biotite/structure/io/trajfile.py,sha256=vQehU2tsUnvK_y5VyAyBpQX9ec-MQrFjFr7X0tYM8tI,25184
 biotite/structure/io/__init__.py,sha256=Lxmd8x6lpWz8nA0QhXmrgjvD_mOP0KyGmEzsVGzxXX4,998
 biotite/structure/io/general.py,sha256=GknBtXTMUsxhEiBrnB1dxW5ndFDHXnXT39xAlNAEr_4,8448
 biotite/structure/io/dcd/__init__.py,sha256=tYiiTSmqDrsSgg_sZaoQgx2D8N9OeqlooxH46-4-iaQ,388
 biotite/structure/io/dcd/file.py,sha256=jaU81fvGl4WG0zXB1dBKTOtSvFF3fS0kxeNR-wwpXlY,2224
 biotite/structure/io/trr/__init__.py,sha256=5WNHMGiHNNzYdoiybE6Cs0bYAcznS5D3ABu7gHDJ__A,359
 biotite/structure/io/trr/file.py,sha256=2LjaLoKYfNgyQGSEfQ1TdZQqaPyrBh3irbJdmEKFTMI,1235
-biotite/structure/io/pdbx/bcif.py,sha256=FD9F_K14wDLApgaHtJ8Ove6Gogpk_8MB4MbuvMJ0SlY,19820
-biotite/structure/io/pdbx/convert.py,sha256=8MHZHIFZ-sjg2bMQpXV1bRIc9IYHekGO5kQENW6gsfI,59629
-biotite/structure/io/pdbx/encoding.pyx,sha256=KMfSe853yRKRCKzBNOl-JWtep7_i7Z0rzFFu6Tct0vE,28725
-biotite/structure/io/pdbx/__init__.py,sha256=t8TqRYZdoHW_Jt68ZfXCZ0jmchLOuQbtYWRYwCocnEc,693
-biotite/structure/io/pdbx/cif.py,sha256=Y4cboAQX1K_IwCSS1L-2ZEgi4yMXguc_dKEbbGZYTtI,32925
-biotite/structure/io/pdbx/component.py,sha256=1ILksDKeb2TdRy3hW1-mSpno_zZEqT0sdpGlq_eY4U0,8026
-biotite/structure/io/pdbx/encoding.cpython-311-darwin.so,sha256=toy_PI2BPB9ouPL_6DPkVnKJCa_c1h7QkgSBFHXwYHs,1162224
+biotite/structure/io/pdbx/bcif.py,sha256=TU8qz07kSxPK1GRzZK_t-wdkS5KlnvN7kmIwZdgag9E,20638
+biotite/structure/io/pdbx/convert.py,sha256=HdgQpVRqE_q99IsjnAIbvL8PUE5dRt1PYscFmvBp6F8,65635
+biotite/structure/io/pdbx/encoding.pyx,sha256=ySywnGIvlDER4tcQzFMEgWkQJN_sMzB__MHbRQ0-wxc,31184
+biotite/structure/io/pdbx/__init__.py,sha256=DlVXhrcuAF9A6Gim_JMccz-j8jDZuF2liDDA5cZxzx8,717
+biotite/structure/io/pdbx/compress.py,sha256=-v-lpJDxeEyYtXK3tGwQFwqm73355ZocT4U6L1bZcmk,11800
+biotite/structure/io/pdbx/cif.py,sha256=va3C2ANDFSuyY72gWWboY9TPUA1DlTB3zjQVeV80b2A,34506
+biotite/structure/io/pdbx/component.py,sha256=L07unwDqSrNtlCAYSjTbm3Ve8rLt_rT3K2f2-zUNP_o,8240
+biotite/structure/io/pdbx/encoding.cpython-311-darwin.so,sha256=kzWzc0gZ30OZycKm5VDPrC1NMsbM9C4s2KM2HxBzKJ0,1180272
 biotite/structure/io/xtc/__init__.py,sha256=ipZjsWBil-h2ujdlEobyI2jGy5xsfRVOPAyCsYAJ7G4,357
 biotite/structure/io/xtc/file.py,sha256=PknO2-xzLgKTBW5Gig5Hv1HUZ4BIHRf2con2MLxEwNU,1235
 biotite/structure/io/pdbqt/convert.py,sha256=xF4m-tZG_4ykhZsknqUivFXbb6VqLXVLwmhi1AbOmuw,4008
 biotite/structure/io/pdbqt/__init__.py,sha256=a0_uIzhzCHdLBMdXhb5KEhbyRSURmqYXNwdjnJ6LAbY,441
-biotite/structure/io/pdbqt/file.py,sha256=aHMr0Oyf0oJbJ61AnFQlpISLCkt8gA3K15OEcd7gssM,26633
+biotite/structure/io/pdbqt/file.py,sha256=XpEnIs1gW2E_r4Udnvadevo6x0ii-JmgBHnhoTFKj5g,26633
 biotite/structure/io/netcdf/__init__.py,sha256=SX8u2Eu99PXiP0kvHJ4mMCXTy68wV-ptcFdYn9DzEVk,350
 biotite/structure/io/netcdf/file.py,sha256=m5POlwjX0y28FjrK3lCglX9JD9r6iVuHJlQgJNZNStI,2192
 biotite/structure/io/gro/__init__.py,sha256=tEKrIlgahoBJXvrwtmZ1yVSOE8QW8GS6lk7MHwE2Cso,408
@@ -296,27 +302,31 @@ biotite/structure/io/mol/convert.py,sha256=sj7V7pdBlGQAAaXl7fAVf8JZC4Fd-z0gjne_0
 biotite/structure/io/mol/__init__.py,sha256=WvcNPDdf9W1zPyJ0tjTvGNxA83ht18uRQA8BF4s7Wno,582
 biotite/structure/io/mol/ctab.py,sha256=r6Ryx3ZBhlxm88PWVOWGwxrgPow95DLEAcIf8N2mkGU,13470
 biotite/structure/io/mol/mol.py,sha256=Eterau_ZfXbIkFHpDTvWzM2Yxxmem2hZn1tOQkXNuqM,5461
-biotite/structure/io/mol/sdf.py,sha256=6u2oSfY1BICf0TZ7qkOrMpfbbyYlf6QruoLBCipzKE8,32245
-biotite/structure/io/pdb/convert.py,sha256=fzXkfm-SN9HswZ8srj0v15RRec9hq0BtB3gCgNIlk9s,10602
+biotite/structure/io/mol/sdf.py,sha256=bAfypU7QBrP4DhHDf9Qi5eKGHU_bjC4Ox0xHSlYuPxQ,32314
+biotite/structure/io/pdb/convert.py,sha256=xuodAbfXe3BOuETPhV0x3D1ogJwaba9KFXr4mWuzNqo,10720
 biotite/structure/io/pdb/__init__.py,sha256=5NbUMDRKIe7jJ2ByRHpMhJzY_vIasjSgO63Zxrpq8BM,733
-biotite/structure/io/pdb/file.py,sha256=Ox_ufeO9B78c3ZS06Dpb0I-aYXftEhPN7T3oXnW_uW4,47896
+biotite/structure/io/pdb/file.py,sha256=Qk5oX4mPh7WDF6XS0Fy8BVrhHRtQ-Ro8llpT_W41QZY,50538
 biotite/structure/io/pdb/hybrid36.pyx,sha256=BKV7oh0xrrjqVrkhTn7KEolon57fUhlG4Yf0Tf22wuU,8036
-biotite/structure/io/pdb/hybrid36.cpython-311-darwin.so,sha256=lf9quTaoFdfQTChdBEC1GsrYmhxxgkNJoHtd3T-bG8w,210096
-biotite/structure/info/misc.py,sha256=GIdFhRtzWInhynVXNQwQpJszowmZ_0Jdqh9R706CB_Y,3512
+biotite/structure/io/pdb/hybrid36.cpython-311-darwin.so,sha256=TT_Y-6vWDxMdtsr_ZtXYkZZ9D_Z1yg-ztMGk4M1m0Nw,210096
+biotite/structure/alphabet/pb.py,sha256=gtGuWDpMhJUkVUO30GHhlgNhwwzycGkkGNykw32FUjU,5995
+biotite/structure/alphabet/unkerasify.py,sha256=Ri7rAxBDG7_xlddpReBJkNZrl5ues3_bygpC2gDb3XY,3201
+biotite/structure/alphabet/encoder_weights_3di.kerasify,sha256=m4JF4oVWBbiu6r8DM9ONQ5Bmcbqwr5dxKfqYThOmHpk,1032
+biotite/structure/alphabet/__init__.py,sha256=tUAybrggScCsom1b_EXQ63pA88L_PmQpcYS-MnqKavM,928
+biotite/structure/alphabet/encoder.py,sha256=2BWLMdGBr2bHw09vMhbzPztMKSnVt8UhUf85g5M1xnY,11383
+biotite/structure/alphabet/i3d.py,sha256=eIcm3l0GLkjxm17bykrfwtKpS5AYDAsDiChLOyMVCu0,3010
+biotite/structure/alphabet/pb.license,sha256=OkDCfXO06BfooLXYC3iF7LXXB_Uqqex1B2gjUEFdUZI,1091
+biotite/structure/alphabet/layers.py,sha256=Y1Y8G2LqqzC7M0kNUv8k-EXTVVKGLnPDJKdRrVEf3H4,2087
+biotite/structure/info/components.bcif,sha256=wwalqJIJBcRDT7wXyzWbn89uSsum-4Ah87ImtfpDMVE,57915331
+biotite/structure/info/misc.py,sha256=rfNLLm21FPq-Ugpf3J8tX77fxkQsotZbOY-_vbWmGP0,3429
 biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
-biotite/structure/info/__init__.py,sha256=SMJ93QhJitkvDwTra_MjSsGEuU1V0-PoQ1Kwq7OuRvI,679
-biotite/structure/info/groups.py,sha256=AVDuw4OAwxnUXx6xmCVg0IrXVX9ESKWE4rKtDNYICEY,1983
+biotite/structure/info/__init__.py,sha256=k08kdsKlrxaVQ9x8MjEXoVFaXl1J8OcpLf6iG7dUgOY,698
+biotite/structure/info/groups.py,sha256=dX9kK5KGyLvH38-5L7y_oaaI1poR2FIARrzfBXGSwPQ,3187
 biotite/structure/info/radii.py,sha256=sNbJZz1AU9DBkImwRwwtWZEH_A3CFow5Hsx1D-U3_Bw,5610
-biotite/structure/info/standardize.py,sha256=mF8N112nB5LLo6fZNOxlviZzccDD9ouFKefhR4NhSX0,7713
-biotite/structure/info/bonds.py,sha256=Nv-OKSjBblrGfOsYVYbE6uDs18nIvXr8l-g-7YLmXtM,4501
-biotite/structure/info/masses.py,sha256=kIMc-_NdEushTskuTszdd9FdrPUeqEO9EczOA9sAT7g,4483
-biotite/structure/info/atoms.py,sha256=vBtjGVSLjnh69nFJYJ3s9Li_cnyBDTTijTiD77CLUbc,2622
-biotite/structure/info/ccd.py,sha256=ZMaICtIrkUMLZ6Lvmo5riML1H9JETJqulk6ovJlafMk,3002
-biotite/structure/info/ccd/components.bcif,sha256=xgvErxils9GNg5s0sGI33B7w4lWeUBZRksPer3japnE,35649254
-biotite/structure/info/ccd/amino_acids.txt,sha256=RUyolncqbsplkY2hlajjOSciigyZEYL1GCx_f63jXx4,6669
-biotite/structure/info/ccd/README.rst,sha256=sfFRGesjpATIp5S8kiEV7cr-Jb51fWLGT4KypmzsoPM,342
-biotite/structure/info/ccd/carbohydrates.txt,sha256=bh5Vc84tETB-FKUm6H1brBN6zM5a2zzzwuWyb0MXaLA,4544
-biotite/structure/info/ccd/nucleotides.txt,sha256=Q7Zjz45BAO6c2QDAgvYdKtWAqmjQxy2NQ6r-bsZRqv4,3136
+biotite/structure/info/standardize.py,sha256=hWsxKSo7xdiGRyOoQcay0mslPTtb9cQuQds5IsWG8Xg,7759
+biotite/structure/info/bonds.py,sha256=6pXAZPeKPL2pwFi5fhSyTwh_gd5fToIgvwguGffrE-0,4644
+biotite/structure/info/masses.py,sha256=HOdaeFZkd5LSrl00025S1MwXT7im8V-s0bU54tr1te8,4555
+biotite/structure/info/atoms.py,sha256=RniEQ9e_ocMV3sPdpTokm4s-V8A49n0W0ZsYoEv4YVI,2622
+biotite/structure/info/ccd.py,sha256=EBSqvzgIXl7U5wxSVOFPSaLQLBRP2E_mUVXEwsRyOO4,5853
 biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
 biotite/structure/graphics/rna.py,sha256=w7zFMKo2ZZ4n60SkbkupEXPxe3-KUNa261PF784ry8k,12016
 biotite/structure/graphics/atoms.py,sha256=988_URX4hfTE3oBOYgAvZruOrzogMPcFKiTT5RJL01E,8116

biotite/structure/info/ccd/README.rst

@@ -1,8 +0,0 @@
-These files are based on the
-`Chemical Component Dictionary <https://www.wwpdb.org/data/ccd>`_
-and were created using ``setup_ccd.py``.
-
-To keep the size of the repository small, the original commit should be
-rewritten, if the formats of the affected files are compatible with the
-original ones.
-The name of the commit is ``Add CCD dataset``.