biotite 0.41.2__cp311-cp311-macosx_11_0_arm64.whl → 1.0.1__cp311-cp311-macosx_11_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of biotite might be problematic. Click here for more details.

Files changed (205) hide show
  1. biotite/__init__.py +2 -3
  2. biotite/application/__init__.py +1 -1
  3. biotite/application/application.py +20 -10
  4. biotite/application/autodock/__init__.py +1 -1
  5. biotite/application/autodock/app.py +74 -79
  6. biotite/application/blast/__init__.py +1 -1
  7. biotite/application/blast/alignment.py +19 -10
  8. biotite/application/blast/webapp.py +92 -85
  9. biotite/application/clustalo/__init__.py +1 -1
  10. biotite/application/clustalo/app.py +46 -61
  11. biotite/application/dssp/__init__.py +1 -1
  12. biotite/application/dssp/app.py +8 -11
  13. biotite/application/localapp.py +62 -60
  14. biotite/application/mafft/__init__.py +1 -1
  15. biotite/application/mafft/app.py +16 -22
  16. biotite/application/msaapp.py +78 -89
  17. biotite/application/muscle/__init__.py +1 -1
  18. biotite/application/muscle/app3.py +50 -64
  19. biotite/application/muscle/app5.py +23 -31
  20. biotite/application/sra/__init__.py +1 -1
  21. biotite/application/sra/app.py +64 -68
  22. biotite/application/tantan/__init__.py +1 -1
  23. biotite/application/tantan/app.py +22 -45
  24. biotite/application/util.py +7 -9
  25. biotite/application/viennarna/rnaalifold.py +34 -28
  26. biotite/application/viennarna/rnafold.py +24 -39
  27. biotite/application/viennarna/rnaplot.py +36 -21
  28. biotite/application/viennarna/util.py +17 -12
  29. biotite/application/webapp.py +13 -14
  30. biotite/copyable.py +13 -13
  31. biotite/database/__init__.py +1 -1
  32. biotite/database/entrez/__init__.py +1 -1
  33. biotite/database/entrez/check.py +2 -3
  34. biotite/database/entrez/dbnames.py +7 -5
  35. biotite/database/entrez/download.py +55 -49
  36. biotite/database/entrez/key.py +1 -1
  37. biotite/database/entrez/query.py +62 -23
  38. biotite/database/error.py +2 -1
  39. biotite/database/pubchem/__init__.py +1 -1
  40. biotite/database/pubchem/download.py +43 -45
  41. biotite/database/pubchem/error.py +2 -2
  42. biotite/database/pubchem/query.py +34 -31
  43. biotite/database/pubchem/throttle.py +3 -4
  44. biotite/database/rcsb/__init__.py +1 -1
  45. biotite/database/rcsb/download.py +44 -52
  46. biotite/database/rcsb/query.py +85 -80
  47. biotite/database/uniprot/check.py +6 -3
  48. biotite/database/uniprot/download.py +6 -11
  49. biotite/database/uniprot/query.py +115 -31
  50. biotite/file.py +12 -31
  51. biotite/sequence/__init__.py +3 -3
  52. biotite/sequence/align/__init__.py +2 -2
  53. biotite/sequence/align/alignment.py +99 -90
  54. biotite/sequence/align/banded.cpython-311-darwin.so +0 -0
  55. biotite/sequence/align/buckets.py +12 -10
  56. biotite/sequence/align/cigar.py +43 -52
  57. biotite/sequence/align/kmeralphabet.cpython-311-darwin.so +0 -0
  58. biotite/sequence/align/kmeralphabet.pyx +55 -51
  59. biotite/sequence/align/kmersimilarity.cpython-311-darwin.so +0 -0
  60. biotite/sequence/align/kmertable.cpython-311-darwin.so +0 -0
  61. biotite/sequence/align/kmertable.pyx +3 -2
  62. biotite/sequence/align/localgapped.cpython-311-darwin.so +0 -0
  63. biotite/sequence/align/localungapped.cpython-311-darwin.so +0 -0
  64. biotite/sequence/align/matrix.py +81 -82
  65. biotite/sequence/align/multiple.cpython-311-darwin.so +0 -0
  66. biotite/sequence/align/multiple.pyx +1 -1
  67. biotite/sequence/align/pairwise.cpython-311-darwin.so +0 -0
  68. biotite/sequence/align/permutation.cpython-311-darwin.so +0 -0
  69. biotite/sequence/align/permutation.pyx +12 -4
  70. biotite/sequence/align/selector.cpython-311-darwin.so +0 -0
  71. biotite/sequence/align/selector.pyx +52 -54
  72. biotite/sequence/align/statistics.py +32 -33
  73. biotite/sequence/align/tracetable.cpython-311-darwin.so +0 -0
  74. biotite/sequence/alphabet.py +51 -65
  75. biotite/sequence/annotation.py +78 -77
  76. biotite/sequence/codec.cpython-311-darwin.so +0 -0
  77. biotite/sequence/codon.py +90 -79
  78. biotite/sequence/graphics/__init__.py +1 -1
  79. biotite/sequence/graphics/alignment.py +184 -103
  80. biotite/sequence/graphics/colorschemes.py +10 -12
  81. biotite/sequence/graphics/dendrogram.py +79 -34
  82. biotite/sequence/graphics/features.py +133 -99
  83. biotite/sequence/graphics/logo.py +22 -28
  84. biotite/sequence/graphics/plasmid.py +229 -178
  85. biotite/sequence/io/fasta/__init__.py +1 -1
  86. biotite/sequence/io/fasta/convert.py +44 -33
  87. biotite/sequence/io/fasta/file.py +42 -55
  88. biotite/sequence/io/fastq/__init__.py +1 -1
  89. biotite/sequence/io/fastq/convert.py +11 -14
  90. biotite/sequence/io/fastq/file.py +68 -112
  91. biotite/sequence/io/genbank/__init__.py +2 -2
  92. biotite/sequence/io/genbank/annotation.py +12 -20
  93. biotite/sequence/io/genbank/file.py +74 -76
  94. biotite/sequence/io/genbank/metadata.py +74 -62
  95. biotite/sequence/io/genbank/sequence.py +13 -14
  96. biotite/sequence/io/general.py +39 -30
  97. biotite/sequence/io/gff/__init__.py +2 -2
  98. biotite/sequence/io/gff/convert.py +10 -15
  99. biotite/sequence/io/gff/file.py +81 -65
  100. biotite/sequence/phylo/__init__.py +1 -1
  101. biotite/sequence/phylo/nj.cpython-311-darwin.so +0 -0
  102. biotite/sequence/phylo/tree.cpython-311-darwin.so +0 -0
  103. biotite/sequence/phylo/upgma.cpython-311-darwin.so +0 -0
  104. biotite/sequence/profile.py +57 -28
  105. biotite/sequence/search.py +17 -15
  106. biotite/sequence/seqtypes.py +200 -164
  107. biotite/sequence/sequence.py +15 -17
  108. biotite/structure/__init__.py +3 -3
  109. biotite/structure/atoms.py +246 -236
  110. biotite/structure/basepairs.py +260 -271
  111. biotite/structure/bonds.cpython-311-darwin.so +0 -0
  112. biotite/structure/bonds.pyx +29 -32
  113. biotite/structure/box.py +67 -71
  114. biotite/structure/celllist.cpython-311-darwin.so +0 -0
  115. biotite/structure/chains.py +55 -39
  116. biotite/structure/charges.cpython-311-darwin.so +0 -0
  117. biotite/structure/compare.py +32 -32
  118. biotite/structure/density.py +13 -18
  119. biotite/structure/dotbracket.py +20 -22
  120. biotite/structure/error.py +10 -2
  121. biotite/structure/filter.py +83 -78
  122. biotite/structure/geometry.py +130 -119
  123. biotite/structure/graphics/atoms.py +60 -43
  124. biotite/structure/graphics/rna.py +81 -68
  125. biotite/structure/hbond.py +112 -93
  126. biotite/structure/info/__init__.py +0 -2
  127. biotite/structure/info/atoms.py +10 -11
  128. biotite/structure/info/bonds.py +41 -43
  129. biotite/structure/info/ccd.py +4 -5
  130. biotite/structure/info/groups.py +1 -3
  131. biotite/structure/info/masses.py +5 -10
  132. biotite/structure/info/misc.py +1 -1
  133. biotite/structure/info/radii.py +20 -20
  134. biotite/structure/info/standardize.py +15 -26
  135. biotite/structure/integrity.py +18 -71
  136. biotite/structure/io/__init__.py +3 -4
  137. biotite/structure/io/dcd/__init__.py +1 -1
  138. biotite/structure/io/dcd/file.py +22 -20
  139. biotite/structure/io/general.py +47 -61
  140. biotite/structure/io/gro/__init__.py +1 -1
  141. biotite/structure/io/gro/file.py +73 -72
  142. biotite/structure/io/mol/__init__.py +1 -1
  143. biotite/structure/io/mol/convert.py +8 -11
  144. biotite/structure/io/mol/ctab.py +37 -36
  145. biotite/structure/io/mol/header.py +14 -10
  146. biotite/structure/io/mol/mol.py +9 -53
  147. biotite/structure/io/mol/sdf.py +47 -50
  148. biotite/structure/io/netcdf/__init__.py +1 -1
  149. biotite/structure/io/netcdf/file.py +24 -23
  150. biotite/structure/io/pdb/__init__.py +1 -1
  151. biotite/structure/io/pdb/convert.py +32 -20
  152. biotite/structure/io/pdb/file.py +151 -172
  153. biotite/structure/io/pdb/hybrid36.cpython-311-darwin.so +0 -0
  154. biotite/structure/io/pdbqt/__init__.py +1 -1
  155. biotite/structure/io/pdbqt/convert.py +17 -11
  156. biotite/structure/io/pdbqt/file.py +128 -80
  157. biotite/structure/io/pdbx/__init__.py +1 -2
  158. biotite/structure/io/pdbx/bcif.py +36 -44
  159. biotite/structure/io/pdbx/cif.py +140 -110
  160. biotite/structure/io/pdbx/component.py +10 -16
  161. biotite/structure/io/pdbx/convert.py +260 -258
  162. biotite/structure/io/pdbx/encoding.cpython-311-darwin.so +0 -0
  163. biotite/structure/io/trajfile.py +90 -107
  164. biotite/structure/io/trr/__init__.py +1 -1
  165. biotite/structure/io/trr/file.py +12 -15
  166. biotite/structure/io/xtc/__init__.py +1 -1
  167. biotite/structure/io/xtc/file.py +11 -14
  168. biotite/structure/mechanics.py +9 -11
  169. biotite/structure/molecules.py +3 -4
  170. biotite/structure/pseudoknots.py +53 -67
  171. biotite/structure/rdf.py +23 -21
  172. biotite/structure/repair.py +137 -86
  173. biotite/structure/residues.py +26 -16
  174. biotite/structure/sasa.cpython-311-darwin.so +0 -0
  175. biotite/structure/{resutil.py → segments.py} +24 -23
  176. biotite/structure/sequence.py +10 -11
  177. biotite/structure/sse.py +100 -119
  178. biotite/structure/superimpose.py +39 -77
  179. biotite/structure/transform.py +97 -71
  180. biotite/structure/util.py +11 -13
  181. biotite/version.py +2 -2
  182. biotite/visualize.py +69 -55
  183. {biotite-0.41.2.dist-info → biotite-1.0.1.dist-info}/METADATA +6 -5
  184. biotite-1.0.1.dist-info/RECORD +322 -0
  185. biotite/structure/io/ctab.py +0 -72
  186. biotite/structure/io/mmtf/__init__.py +0 -21
  187. biotite/structure/io/mmtf/assembly.py +0 -214
  188. biotite/structure/io/mmtf/convertarray.cpython-311-darwin.so +0 -0
  189. biotite/structure/io/mmtf/convertarray.pyx +0 -341
  190. biotite/structure/io/mmtf/convertfile.cpython-311-darwin.so +0 -0
  191. biotite/structure/io/mmtf/convertfile.pyx +0 -501
  192. biotite/structure/io/mmtf/decode.cpython-311-darwin.so +0 -0
  193. biotite/structure/io/mmtf/decode.pyx +0 -152
  194. biotite/structure/io/mmtf/encode.cpython-311-darwin.so +0 -0
  195. biotite/structure/io/mmtf/encode.pyx +0 -183
  196. biotite/structure/io/mmtf/file.py +0 -233
  197. biotite/structure/io/npz/__init__.py +0 -20
  198. biotite/structure/io/npz/file.py +0 -152
  199. biotite/structure/io/pdbx/legacy.py +0 -267
  200. biotite/structure/io/tng/__init__.py +0 -13
  201. biotite/structure/io/tng/file.py +0 -46
  202. biotite/temp.py +0 -86
  203. biotite-0.41.2.dist-info/RECORD +0 -340
  204. {biotite-0.41.2.dist-info → biotite-1.0.1.dist-info}/WHEEL +0 -0
  205. {biotite-0.41.2.dist-info → biotite-1.0.1.dist-info}/licenses/LICENSE.rst +0 -0
biotite-0.41.2.dist-info/RECORD DELETED
@@ -1,340 +0,0 @@
1
- biotite/version.py,sha256=B-YSGBDRB4ciuVXnP-SuiW8lKg4atk7RnTeThXw3Jys,413
2
- biotite/copyable.py,sha256=Rmsso_e9quxWc23SBQh2M45jTT36SerwSmt3ONng04M,1972
3
- biotite/__init__.py,sha256=9KfmpRh6kG0yiuwoCmj8C-mAJOWnycFFOpwWnVeXUEI,551
4
- biotite/visualize.py,sha256=mLME6fOGwdcUZLUzDTbwUpZokC4D1cVE6ICdtJDc0yw,9842
5
- biotite/file.py,sha256=te0tI2Qdh9JQlwe_FgkyWIU6RG6WYgWNbAj3GF3wzh0,7429
6
- biotite/temp.py,sha256=AenIC7m3rrezikJDKgTEnLZigACubfsw_UcmYMGyGa8,2045
7
- biotite/database/error.py,sha256=oEJGj28R9VRkLt_DcsqNsf-rwHe3E2ma5uduzqAgZ1w,408
8
- biotite/database/__init__.py,sha256=_C25CsDE8O_770Vmk6sCK4FKlQ0A1hUhWaMRPOvkDtM,724
9
- biotite/database/entrez/check.py,sha256=0k_shKrxNeN-UDSzs-NSnMYKKTmqW91J1O9YZZqc2xI,1838
10
- biotite/database/entrez/query.py,sha256=c23d7IBNM4ANx9ihazW4raKAhjc6ApvzVVzX7aIhycc,7022
11
- biotite/database/entrez/key.py,sha256=G2VjGYA9JMnHjve-8EVQ5FNmDGq5MX12w_As7Ch-t7I,1111
12
- biotite/database/entrez/download.py,sha256=kc4J1Q4sixDqMFct_TuwmxEi6cD8zMhj8SKx4GpyLfg,7424
13
- biotite/database/entrez/__init__.py,sha256=kEqKdo14RWWiLI5rhDoTIdbWZy2ztNODcxxh54ugbcc,387
14
- biotite/database/entrez/dbnames.py,sha256=Cf87B9-2bVQuZpuSwB94vOuVO3x3UdEcwxR0DNupwXY,2614
15
- biotite/database/uniprot/check.py,sha256=vSIZ6t7zzOvAifhRONFcYHUxxs0YFB9lflB_9YBEUGw,1246
16
- biotite/database/uniprot/query.py,sha256=bzJenXwN3iKLxwJT9uaB19LBam8GRYWfeBzS_Pyones,6890
17
- biotite/database/uniprot/download.py,sha256=rWrgLrDCnItLe5fU3_oSZvYJToqWmqfffN5JvBumdyM,4378
18
- biotite/database/uniprot/__init__.py,sha256=Lsk5Jd-qb5167VTgN48lWSSbqpjCM-fD0XKJyxaZb7o,334
19
- biotite/database/pubchem/error.py,sha256=5kLtd9r3KkR9PZfTEfaRA5LRIG2K-XQKqiEBZZ0pd4g,711
20
- biotite/database/pubchem/query.py,sha256=PBXIMhxWxIsTZQDDsnConZbm3j7GZwYqgN_ldn9bZsk,26425
21
- biotite/database/pubchem/download.py,sha256=gRNWiHlMMWWCDBjgsAmtvygkM3Agc8yQeuwV2VKeJtQ,9997
22
- biotite/database/pubchem/__init__.py,sha256=Lnk0h85FzSFBu6KAG3P5ssbGfXE2lX-EMYXWCafPF0o,668
23
- biotite/database/pubchem/throttle.py,sha256=hg5YlPeaorT-Y_2ZAz_duTbUC9ltF7VE4M-hq-xm_a8,3297
24
- biotite/database/rcsb/query.py,sha256=I5eAsdsW8FT-O0cKz_71dpS-HrEe0VtauliAPQMPBSo,33065
25
- biotite/database/rcsb/download.py,sha256=A34iNIVufjUu1b21hj3jhcxIlXmUWDLt5I5jCMBOW1I,5996
26
- biotite/database/rcsb/__init__.py,sha256=D0aWxH2qmDycBBNtSUUQQHusOYxS1sf_4P4rJI85kyU,331
27
- biotite/application/util.py,sha256=KmvdyozUayuvlmGZ2QYkXeJCkqayvEmpQJDSXPL8I7w,2104
28
- biotite/application/localapp.py,sha256=RA6MVIn5lSOhfv62H1QP6ymkiiMvzjK3swb9JSY6xAs,9450
29
- biotite/application/webapp.py,sha256=8jaHFsjJmt5EUMX1ajiOVm1yJqpFRfH_2zb44J5H9xc,2226
30
- biotite/application/__init__.py,sha256=7z7DL0YWNGRGRCs4lUPe7jh8bxHqoIygV4T7ATMZQlQ,3078
31
- biotite/application/application.py,sha256=9OElj1-LNGdYmqWrrhQL3F7xHO8ci2tL8w0b9A8F-bE,8130
32
- biotite/application/msaapp.py,sha256=tAXy8OKqHProreN4zDgNGcFFC7vFGoK6YFgNLeD9QxA,12346
33
- biotite/application/dssp/__init__.py,sha256=CdRcAe_Uc_kGl_I0_Cn1Qk_4RsFn_n-u8SbLrklvYEM,322
34
- biotite/application/dssp/app.py,sha256=5l3ZKHHacp18w1L3tC1MImpfIWWyltQkV-cATlDmCvc,4828
35
- biotite/application/viennarna/rnaalifold.py,sha256=4petrddQWumjtUzWxjVKqategejEczthqkwMIjkPvDE,10556
36
- biotite/application/viennarna/util.py,sha256=mmfX6uJjJfPyc4lNx4FvbhIP2PFxVvjwxWQrEm9P7MQ,2675
37
- biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
38
- biotite/application/viennarna/rnaplot.py,sha256=B5brOyj5MxUXP0H0O6m3iOuiKwB9KvNTXFpE1Ub9ejc,6193
39
- biotite/application/viennarna/rnafold.py,sha256=vTA6QYvKqQXoIb7yGIOmeM1ZO7ql0h4ONF2KyepZ-1A,8355
40
- biotite/application/sra/__init__.py,sha256=zaa9acXWJ1xZBDY8Jgtynhw2t02a6NxuYSqQux2l88E,552
41
- biotite/application/sra/app.py,sha256=aUV81ZUPCv_jow9oVjGHgtZITRl6YukBaI1c7yaHFX4,15898
42
- biotite/application/autodock/__init__.py,sha256=DYbdIDGdRX2GUP1wTb23e7uaVfkLMFneFGDIlXEO6Fg,314
43
- biotite/application/autodock/app.py,sha256=Aoi0T0fhabadL_OxY5RqVRonQM4EHJ55PugcpMM4qXQ,18803
44
- biotite/application/blast/alignment.py,sha256=BAZvhURmcsfqd0oNaHN_58Es2BpbhZEvwndtZcVQOB4,3068
45
- biotite/application/blast/webapp.py,sha256=rU0BIacD_grvfupNVqRJxwIpkRTsmRAP2A8sKgAKhEc,14868
46
- biotite/application/blast/__init__.py,sha256=JCOgok2454uplxe8kI6y5gD65e8WIxwdwQSPluAFH64,365
47
- biotite/application/tantan/__init__.py,sha256=EjUQmTTdeqJQhujht-JMwenVkdS3TRdLZdTWOlC2i2w,327
48
- biotite/application/tantan/app.py,sha256=P72S6U9aIhn7IFRxDMOTLa7F0UJJV3XZx_Zk7hCZ-A4,7736
49
- biotite/application/mafft/__init__.py,sha256=dzyLXfX1xT8bSeG_oZRkZr9RlLHsQSMQjKMnyBN4-7w,314
50
- biotite/application/mafft/app.py,sha256=VExLgSrzbyhyvpaCupICWyTuAc0Txq-w5ntbGyHr7B0,3500
51
- biotite/application/clustalo/__init__.py,sha256=L2UbN-1yS2PYfOcZaD9moLz1PjMStkOffvua9hPVzf8,325
52
- biotite/application/clustalo/app.py,sha256=tPZFZ5SP1jCE1OQlTz7WzFOmdZ5B6JHTTjaCUZgfqtQ,7830
53
- biotite/application/muscle/app3.py,sha256=tm51pw2zuDcuua-an5eaD_oBGh_PBL8vdlGdfUkXLF4,8450
54
- biotite/application/muscle/__init__.py,sha256=UZFXceMzefsY6Y1CokOpWC2ZgWeiM8NiCHqEzLJDeQ8,337
55
- biotite/application/muscle/app5.py,sha256=9tbw6XISmu9CEvFPDxoXW72HnrpAPf0MZY4jH7F8jK0,4799
56
- biotite/sequence/codec.cpython-311-darwin.so,sha256=Anux1DywdBKe6CEB05szqvdgCBTaUF74sHQmacQUAls,285736
57
- biotite/sequence/annotation.py,sha256=ab49UyMA1StDMGL-67NG75FRYes4-1qM7RAqxYbPxeE,29746
58
- biotite/sequence/codec.pyx,sha256=ed415FTMBJfiI9WbgKRFO3tF1f_SpRHxyEafLxW-g1k,4962
59
- biotite/sequence/sequence.py,sha256=dXDPDGwPDg0uuMGfB-PArETP_HTH1lSrexQJyxabPgU,11688
60
- biotite/sequence/profile.py,sha256=LkH-jcTmxOyWMmhTgjjF7ykmQ7KlKidAdGp3X5_Wm-4,16813
61
- biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
62
- biotite/sequence/__init__.py,sha256=zO_A7LxqkiHS-sO_BIddAhA-J2tGd_4f6hPFSAD1zOk,3423
63
- biotite/sequence/seqtypes.py,sha256=IlaprG0DjBhAo_Y4gMW4gPtYXaTx2TknxpYp0NM2Z9M,19590
64
- biotite/sequence/codon.py,sha256=IR-3WjyOohXY7FhSB7Hk5qhkQWz5bm9Isuho02SntJ8,16455
65
- biotite/sequence/search.py,sha256=er8lqF2WM4rFG3gixxgEnJ8yNHiWae--02TjJCNRo1c,3149
66
- biotite/sequence/alphabet.py,sha256=tAfI1jWNDAneRo1AOj_j_Kq8OgKHKKE9wql9YJJhNFs,17502
67
- biotite/sequence/io/__init__.py,sha256=4K13uxFWe8IpNC8yuVxjDiI7-8lmXu7qT6iMmVSqPs4,314
68
- biotite/sequence/io/general.py,sha256=4HIIU6VNNfOLfVqAkg_mXzmNZZlOeJWzwsChu_dTVvc,6570
69
- biotite/sequence/io/fasta/convert.py,sha256=saQmgRHqnhqqTmbSf3rn4_m6RcVulGEFeVK7g928rdI,9433
70
- biotite/sequence/io/fasta/__init__.py,sha256=rq4Pze3xj0Yj4bvh6BgNe-ZVO4yTfchpDOtlz-EGzmo,719
71
- biotite/sequence/io/fasta/file.py,sha256=JYTeHugajnSJ9lwSwcVgsBBEei9pf9S4LWZrM2VH0Vs,9437
72
- biotite/sequence/io/gff/convert.py,sha256=BnAMkQl7mVO6b2vupznhDyd5-tpbhYKstCRMmhlEmOM,4699
73
- biotite/sequence/io/gff/__init__.py,sha256=MgHjJOxnpGa8irduKlcilQZMsTlNy8A0NW-YWF37I8c,923
74
- biotite/sequence/io/gff/file.py,sha256=fOvEGMOAyzle9Z480ns6iDGIgAyCJivCMgiW15KsEuw,16068
75
- biotite/sequence/io/genbank/annotation.py,sha256=x-v-TuJzTsD7AQYSHiW9tYu7DptrF-Y_65qHB-5lkQE,9454
76
- biotite/sequence/io/genbank/metadata.py,sha256=Zpc2Q-xuR7aCJR8ybl1_xhPQaVj8JxZzuUtDpJRxdDk,9441
77
- biotite/sequence/io/genbank/sequence.py,sha256=2Tp36vDeeBxVXH6Jcr0q0HQoT6xHU2uQW4VHF_spU5w,5392
78
- biotite/sequence/io/genbank/__init__.py,sha256=hHZLrbxcjgaQsNYd6oAlRTzsyM8g349_QT4zhQTv8o8,472
79
- biotite/sequence/io/genbank/file.py,sha256=lY5LPFJU7q1mGWkE_iF8XQgBzkY_3aOFCxI9n5SFcHk,20646
80
- biotite/sequence/io/fastq/convert.py,sha256=eluwgaDZggVNaBmyNWYioxsvcajJfqWTqTU12BP__yo,3767
81
- biotite/sequence/io/fastq/__init__.py,sha256=B_X3WAWxlHkYWJAO7Aeb22RWtsx79y7s6TnmcIP4IGQ,587
82
- biotite/sequence/io/fastq/file.py,sha256=a_tk-RyqcJn0ioRe68V6ET3g8if3i5L_Dg0HAjrLw14,19115
83
- biotite/sequence/align/selector.cpython-311-darwin.so,sha256=kWoV7qhOw8gPIYB25fdPll1UOl8TyE74ZdyxWQmQzSU,331120
84
- biotite/sequence/align/matrix.py,sha256=fYfhqeuMZJEYJsaTFgbRLnu3BBFx97UANfIhGxHT7l0,13287
85
- biotite/sequence/align/permutation.pyx,sha256=nb3yhmkb_JYfopL2ozyIEmaUw2z_wGUOdMGDrediV80,9710
86
- biotite/sequence/align/selector.pyx,sha256=2k1AmyRvEsth2-osmGSaQYjGFbmwNcADZW0_b4v9g6c,33798
87
- biotite/sequence/align/kmeralphabet.cpython-311-darwin.so,sha256=-iYvWlgknJnfmO_dARW6zSA7zoUCAUZb_oUHTbvYyEw,394976
88
- biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
89
- biotite/sequence/align/kmeralphabet.pyx,sha256=suUjSyFvcJ1aXND4nJV06Zyjnf_ST0bU_5ISyiB5Gts,18253
90
- biotite/sequence/align/kmertable.cpython-311-darwin.so,sha256=0RljYfKo33Vh2NCVpYSLHKQCNCqeLGuF8Li_GSlvbEg,726624
91
- biotite/sequence/align/alignment.py,sha256=MF_3R2MMjuwwvG7j4pybQjdPCTk2fAwg_4gW-muzKfA,21338
92
- biotite/sequence/align/kmersimilarity.cpython-311-darwin.so,sha256=7-JiJB7L2D3R_gueqkx6c0BrHyBtXrowoabm28H457o,232360
93
- biotite/sequence/align/tracetable.pyx,sha256=1gsT3OV7VkE6i_UpNiYOLVvD2_tfJgbNZb1yv9F4XR8,15455
94
- biotite/sequence/align/pairwise.pyx,sha256=88bZUcDG3CflZPdUN_HMJaIMTKCAtBhmhq946tY__KE,22836
95
- biotite/sequence/align/__init__.py,sha256=V9-8Q0QUBHfelhT-ilk1CbzJjwcfiqHCvnCfOV20H0k,4714
96
- biotite/sequence/align/tracetable.cpython-311-darwin.so,sha256=VQO8JKmG5Jzy80TecH2JUnPl7Oa16MEQPVhu38atXSo,204416
97
- biotite/sequence/align/localungapped.pyx,sha256=rj6gbuyLQIo6ZuPwVt01rs3fOSOjpzq6Vx3v6_zKdEQ,9696
98
- biotite/sequence/align/buckets.py,sha256=6vIIMRT3h3t8PWaJxT3TjtA_fKtYyalBv-E4OdDOy00,2422
99
- biotite/sequence/align/multiple.cpython-311-darwin.so,sha256=IKJ0TyEUN8jklat0ocO08HiG5vIjkeV9NJjFjpZaARY,503024
100
- biotite/sequence/align/localgapped.pyx,sha256=djdmgvACXde0dyqbKttc4itgu0MNh7aF0U9L6tHTZXM,33385
101
- biotite/sequence/align/permutation.cpython-311-darwin.so,sha256=dPJARsxpXJirh5wFIfbkdLjcGFOwlKaGU-EOz_o5zbA,236128
102
- biotite/sequence/align/cigar.py,sha256=chS5LnAwHPZmCw-zKVR4apAuSMuxaxxuoDG2w9fLWFg,14647
103
- biotite/sequence/align/tracetable.pxd,sha256=_VP1ayP6FZL1Tzn1pCCbt6xPZDzFtE9bH0Gvop2lxyQ,2825
104
- biotite/sequence/align/kmertable.pyx,sha256=H9fssGH4VPTjpulVlRRXIN2m3lzFDXP5OLcaXLg3pR8,121279
105
- biotite/sequence/align/multiple.pyx,sha256=BSJTxq8_pR7pp70-iNOmCqoeBvB3PEHeRWx2akvpFgw,21964
106
- biotite/sequence/align/statistics.py,sha256=TalCx3RT8jozU56DMjNKM2Q-fkRiHVq4mI3Wy1YH93M,9732
107
- biotite/sequence/align/banded.pyx,sha256=-5peQOsZHoe27GjZCWrlrVN6YxsCEQCn0HkpglxDsbU,25392
108
- biotite/sequence/align/pairwise.cpython-311-darwin.so,sha256=OARw4ZRd23nkGJzeZwaGO8DzarmO3moTa-3hwTfj0x0,561744
109
- biotite/sequence/align/banded.cpython-311-darwin.so,sha256=ihCR_lqEsBzFrvaJgbVl_XeJPJg29iVbl3hDxUi75og,524688
110
- biotite/sequence/align/kmersimilarity.pyx,sha256=EBpz8R_fofRd4gsmBJLuH2qZgMWKlzQkCJ54w_-K7gQ,8433
111
- biotite/sequence/align/localgapped.cpython-311-darwin.so,sha256=_stnMJxUqqrvONNbwYJfitTaobSNetuyjTaZdiK-AQk,1184672
112
- biotite/sequence/align/localungapped.cpython-311-darwin.so,sha256=Rq1fZQEaqyyE16tjitBC90xJ1YdsT-U4AX_DVRwQ7Wo,306240
113
- biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
114
- biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
115
- biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
116
- biotite/sequence/align/matrix_data/PAM80.mat,sha256=EQjS999W5zT3ltZxtjqNsdF54cED_KfiXMCr_0EdvHs,2666
117
- biotite/sequence/align/matrix_data/RBLOSUM59_13p.mat,sha256=VkfMzO1eMLvpj5x4iL_YAopkZpYEjvx0QnuveFoVnTg,1850
118
- biotite/sequence/align/matrix_data/PAM40.mat,sha256=OAGOKH9t72qvn5P2ydSf3oPvy-XSiFH1vC_-a4hqEAs,2666
119
- biotite/sequence/align/matrix_data/PAM400.mat,sha256=sdF4tBZUHl_WQA_YEhR46_TMkaqhsdfh6j4EzylYqKo,2068
120
- biotite/sequence/align/matrix_data/PAM170.mat,sha256=a4eCSlODOitkpUjyysvm3A9WtVBN-S_IH3kjbG9AVtA,2668
121
- biotite/sequence/align/matrix_data/PAM160.mat,sha256=87otpzOMs1nIbU_B5MvTpShSJ3iixYyHpAJttuwFeoY,2067
122
- biotite/sequence/align/matrix_data/PAM410.mat,sha256=gtd1bfoNX8M8Ey4B266w7AyTVi0kD91NcF3KJVB6wcM,2669
123
- biotite/sequence/align/matrix_data/PAM50.mat,sha256=L3wZ938pS5_dWww1UAITFNql0NaDyIDk4NrCK9Yz9Ww,2666
124
- biotite/sequence/align/matrix_data/GONNET.mat,sha256=xNJHqcmqSFtO1fFCL7Q1rhr-MVsjPLi6yMmXJLQSUTU,1679
125
- biotite/sequence/align/matrix_data/PAM90.mat,sha256=e-zxoVFQHxDoHT2_83SgzRnY88tT7_q8lg6Ikk3ioXs,2666
126
- biotite/sequence/align/matrix_data/BLOSUM35.mat,sha256=wt6Gkbx6KPazNoRXfedE-yXjH6Par0PXiVpFprenJGU,2122
127
- biotite/sequence/align/matrix_data/BLOSUM62_5.0.mat,sha256=WvizmTK3QOPODABlz6_X8YT4KgvMZKy_0PkbOthDpjA,1850
128
- biotite/sequence/align/matrix_data/PAM200.mat,sha256=BUDVdPGRgVgxH552pwFA2WkO5QpM1gLLu6cgMiNhprs,2067
129
- biotite/sequence/align/matrix_data/PAM360.mat,sha256=-TWC24-2AF5Tfsg64Sopiap34154wHIFmrSRQlDDTXo,2068
130
- biotite/sequence/align/matrix_data/BLOSUM85.mat,sha256=olO7oxXaVtmNJNLCtacRvie-235EtZ63aDDV7fXY6c4,2122
131
- biotite/sequence/align/matrix_data/CorBLOSUM57_14.3.mat,sha256=HafyyKYsVh9EJG869LAbqpVF5fMnZB-3uJV38EjlPR4,1850
132
- biotite/sequence/align/matrix_data/BLOSUM90.mat,sha256=TebOIl7Y7oTgQcT2PC2vL0Oqhs3RsSCGgHTchJXHIU8,2122
133
- biotite/sequence/align/matrix_data/PAM500.mat,sha256=C4uoSrH1V_DYYPH5VBF6mUf6l9hSfhQ4Xhrj11suGes,2070
134
- biotite/sequence/align/matrix_data/PAM20.mat,sha256=Pdom13Fn6QDH_zCoJRA1fYlFnkSl0mVmoyZ7tRyQsk8,2666
135
- biotite/sequence/align/matrix_data/PAM460.mat,sha256=BbV3cIcdHq-OxTXgjOEGJdboPOW77s49yLESURjLT1w,2069
136
- biotite/sequence/align/matrix_data/PAM110.mat,sha256=A6diM61xaLeHh-ilFD0NSh7dqR5GSfxvyboLYWr9ctM,2066
137
- biotite/sequence/align/matrix_data/PAM310.mat,sha256=WAMSfgRZyS_Q6pI5j34tN7V6kVHSA1zxVhSwJnZlZTM,2068
138
- biotite/sequence/align/matrix_data/PAM270.mat,sha256=GHm5rgJf1aPdSxiUfIg8c4rO0_MssNR5EU4GCXUbdsk,2669
139
- biotite/sequence/align/matrix_data/BLOSUM45.mat,sha256=GaB31QYKlKYhKtYJ3zA6JARjhzppaU6fV2xXYvv_2wk,2122
140
- biotite/sequence/align/matrix_data/CorBLOSUM61_5.0.mat,sha256=-CAqsMmAh5593WHhcUr9i_idl4-dtrCX-oHY_4oTTCI,1850
141
- biotite/sequence/align/matrix_data/BLOSUM50_13p.mat,sha256=vh0DKMYb6Zqg31fqVhlObTWhk8LJgevlI8VlQmnXOO0,1850
142
- biotite/sequence/align/matrix_data/BLOSUM50.mat,sha256=oVLjC4r8q0IoH_hgS8UTWL6YJTFV_eYq4gcHgFoNPWc,2122
143
- biotite/sequence/align/matrix_data/BLOSUM40.mat,sha256=GiFTkaezFzIoLRmaejU0lEmOrQhCxNzf7KrPY4kRdlg,2122
144
- biotite/sequence/align/matrix_data/PAM260.mat,sha256=9jEd8LFi-qjASOb72oNHpo_l-pDXq3JjLnRfOCm3jFQ,2068
145
- biotite/sequence/align/matrix_data/BLOSUM55.mat,sha256=lIELun4-b77M0Sv5VekXhCZcFW97ruo1NIKv_rdrPiY,2122
146
- biotite/sequence/align/matrix_data/PAM300.mat,sha256=fzIOK3tBJvxAPm3eBUENzQSDblSyqghJwwc6wYUGQfc,2068
147
- biotite/sequence/align/matrix_data/NUC.mat,sha256=xgPkb5oVn7RRYyzfn5xoe659qtsw-yZF9f0Jys5wdJA,1171
148
- biotite/sequence/align/matrix_data/PAM100.mat,sha256=AFv8yYX7JO8xsvpktGbFIHxmfp0HCmb-cDqUmEmbkF4,2066
149
- biotite/sequence/align/matrix_data/PAM470.mat,sha256=iWeG55pioMzuzbuPsmUECPlzowP63Ttgdnq9cKP0gEQ,2671
150
- biotite/sequence/align/matrix_data/RBLOSUM59_14.3.mat,sha256=aGEwU0vk_MOeDN_7u9eOO4DnYjWoEKk6DgxZCgb9HxU,1850
151
- biotite/sequence/align/matrix_data/PAM30.mat,sha256=j8VojReY4jJuqzcZue6SmZUqIMlDTkxVKL9FMuRYbmM,2666
152
- biotite/sequence/align/matrix_data/BLOSUM80.mat,sha256=LllxdrgJKAi6GZz8nYDcjWV7Wj5QFd-4HVVyhYGc4Yc,2124
153
- biotite/sequence/align/matrix_data/CorBLOSUM66_13p.mat,sha256=MmqiM1WZTAN9DX5wxt-8pI1uoEXDgbCStUhwAyXoSlI,1850
154
- biotite/sequence/align/matrix_data/PAM130.mat,sha256=Bs6sHk5rIbjwfffBuYSDk85LtDSsSSnJM2JT3ezw_P4,2067
155
- biotite/sequence/align/matrix_data/PAM440.mat,sha256=bF2DkFSgljfdj3hJMbGngQ62uGks7s0_TaCPWBcf6LI,2068
156
- biotite/sequence/align/matrix_data/PAM290.mat,sha256=pCavYvRBDo9CQLsKDhuwmxyfkV8XROjQISulxSjMfFA,2068
157
- biotite/sequence/align/matrix_data/BLOSUMN.mat,sha256=YszKvjUBwH8YWd8z5xILKFvUMu1cvL1wHkTiOH1dMcY,2121
158
- biotite/sequence/align/matrix_data/CorBLOSUM67_14.3.mat,sha256=_ceD-DlNi1VJsUBdxQFffeMbBaYS0fLO2dDPHHi1d_Q,1850
159
- biotite/sequence/align/matrix_data/BLOSUM62_13p.mat,sha256=4z-R_JXr0dl3gDY6OAXLB_GO71NVP4ibKhduRuFeTjc,1850
160
- biotite/sequence/align/matrix_data/PAM480.mat,sha256=7eUrMblKu7oIAVUvINWGr8Xs2-eCA81TMUhP5m0QvwU,2671
161
- biotite/sequence/align/matrix_data/BLOSUM70.mat,sha256=kl3LsfT3r8zCWRHW3sJjiBUP6S6xCSySRmHPOIhu9Hc,2122
162
- biotite/sequence/align/matrix_data/BLOSUM100.mat,sha256=Lj6_ayLvWa6148OKEtyHuOsd6hszb0suzDIpuY4XPJI,2174
163
- biotite/sequence/align/matrix_data/PAM250.mat,sha256=k2zF7yPgJixf2vdNXYH1iEjrdMyg1b7w85bSexaJcE4,2068
164
- biotite/sequence/align/matrix_data/BLOSUM65.mat,sha256=ZbjpdSsPq4yt3j-p1CbG4EkchKwNtTwk4nDanjKWdYs,2122
165
- biotite/sequence/align/matrix_data/PAM330.mat,sha256=cUa0Kd14AWTjMcH9mU6VUIoKYSpKwV3N7PgPGuYJvtA,2068
166
- biotite/sequence/align/matrix_data/BLOSUM50_14.3.mat,sha256=Ri8ORSV5rHnxJgtNiSJ7PIVTaaYThtMoUHJ4ym8ZSsI,1850
167
- biotite/sequence/align/matrix_data/PAM320.mat,sha256=c1aHpd5_c05sUdVCXYPh0x7i2HLBbeesTXLE2O3q8Xw,2068
168
- biotite/sequence/align/matrix_data/PAM240.mat,sha256=A0Gc2o7EZyP4KmHjDFavCR05FLPlDRfft_dpNPU_T4I,2068
169
- biotite/sequence/align/matrix_data/BLOSUM75.mat,sha256=_nk7JXwGAiqRA4hbEKxihkdPGAxkVVd6UWDT-3J7oX8,2122
170
- biotite/sequence/align/matrix_data/RBLOSUM69_13p.mat,sha256=KtQkagPYJQcovVafvPvEfahCw-Ohmm_Ck3chzWmI4Wc,1850
171
- biotite/sequence/align/matrix_data/BLOSUM60.mat,sha256=iHPf06rge36Xi7k1uwFKwvTb_hHrGNL44TApk3C5Ss8,2122
172
- biotite/sequence/align/matrix_data/PAM490.mat,sha256=34zBaxPzrPcsBEEIU5aiY2Zih5VIm2pXuaNVmMBzGd4,2070
173
- biotite/sequence/align/matrix_data/BLOSUM62.mat,sha256=hVENOEbubV9HeOQlz42vbg27iJswby0TQ04SVHgO-0A,2122
174
- biotite/sequence/align/matrix_data/PAM280.mat,sha256=rY1PexjhfsVxp_4qa7BMiv7_9xF95K2ePVE7i-iAFPM,2068
175
- biotite/sequence/align/matrix_data/PAM10.mat,sha256=iQdTLbAqn58hp5TQ6NJus3C2Af5Ga11i7eJGK9LQjdo,2666
176
- biotite/sequence/align/matrix_data/PAM450.mat,sha256=fboz1GEu55EwZPMG0gl6fFFiWojvz8rbZxcl6ziWNCQ,2068
177
- biotite/sequence/align/matrix_data/RBLOSUM69_14.3.mat,sha256=3q0VPjzTta9EUt7JFlIvJApplOilUrcbg275Xx4tmJY,1850
178
- biotite/sequence/align/matrix_data/PAM120.mat,sha256=6tNjpzRcyzDXtNz144uTYI1LtlQHMoffi6rc2uLU8pU,2067
179
- biotite/sequence/align/matrix_data/CorBLOSUM49_5.0.mat,sha256=GUiQ63AMTP91d5poXhaUN1Pgv-8nb3B_kvQzOKmwEMk,1850
180
- biotite/sequence/align/matrix_data/PAM190.mat,sha256=h-CbsySNQqW2YCS67ptA5CktzqP6hRqvud6dXXYnvVg,2067
181
- biotite/sequence/align/matrix_data/DAYHOFF.mat,sha256=qYkUgQ37EYTawAjc52vbPNJOfC9LYo_vmuX-Arsa2mg,2081
182
- biotite/sequence/align/matrix_data/RBLOSUM64_5.0.mat,sha256=mPlyPQkz3RID3iT4XxYMDmyLfEya7sCV6t5BGdg665I,1850
183
- biotite/sequence/align/matrix_data/PAM230.mat,sha256=kpdHawONOvHXHJgUnkPMFRikSyqjtU1Rucp_foRV6Jc,2068
184
- biotite/sequence/align/matrix_data/PAM350.mat,sha256=gGMAQ5oeI29qv2GkXcg4NBvueP0ylj1CBPj4J1W7Wkg,2669
185
- biotite/sequence/align/matrix_data/PAM150.mat,sha256=1Jbj7ITgahFFbjGbD3dS0WXrYL2HmSYj9_6ITsgNSWQ,2067
186
- biotite/sequence/align/matrix_data/PAM420.mat,sha256=v02OOl9-ZTthEs0UQXdu_olwV7vzcVhlweDKUnUdQfU,2669
187
- biotite/sequence/align/matrix_data/PAM60.mat,sha256=IKL_uHSfVKnGPTxq3TTh78Z6Q4Pw_Um39V8Uz6ACTkE,2666
188
- biotite/sequence/align/matrix_data/IDENTITY.mat,sha256=ZayOMxt7zidr8C0JRiG3knc5XT2F718W3PT4G15AZv4,4057
189
- biotite/sequence/align/matrix_data/PAM390.mat,sha256=EUdmTuLyEY9VF-OcexBlglFhHEks4yzolczpRsXN4ek,2068
190
- biotite/sequence/align/matrix_data/RBLOSUM52_5.0.mat,sha256=LBEV4ormPIv1WntfL4RZt4Pi0He9xYY1zq3iWLXi_fU,1850
191
- biotite/sequence/align/matrix_data/MATCH.mat,sha256=ZSRUBke-2jfozrFVZK5xmGjcKv4GGAcSq9h7PgNmSME,1850
192
- biotite/sequence/align/matrix_data/BLOSUM62_14.3.mat,sha256=X6FYu0KwcgQBEo93S7ZbmcZeL86he_ak0XVa-r8lJ58,1850
193
- biotite/sequence/align/matrix_data/PAM380.mat,sha256=5Bt7fOVfU2vRNR5IHvxFwgRwYgOOqYpdElMMrK-e0HQ,2068
194
- biotite/sequence/align/matrix_data/PAM70.mat,sha256=0YDiLYDyWtpBLW62MHD-cifJVHxmc3Jykf2bLUUpRuU,2666
195
- biotite/sequence/align/matrix_data/PAM430.mat,sha256=PxW4F20F3-ArQgqb8jdemeGw4Q7FKd1P055_sOrKZKg,2068
196
- biotite/sequence/align/matrix_data/BLOSUM50_5.0.mat,sha256=radLsoMzRcgXzX0ZwDShU44I3qRLskMU91lf6V5MTws,1850
197
- biotite/sequence/align/matrix_data/PAM140.mat,sha256=0ZOMbK_5afy-zU8BOL9UkxEkX3DjfD6t-LJGT0H8f-o,2067
198
- biotite/sequence/align/matrix_data/PAM340.mat,sha256=9rV5CU441SuU-MhTIOFBHbg2i6b2NZJ2GfemgAeQUQA,2068
199
- biotite/sequence/align/matrix_data/PAM220.mat,sha256=58FW5l4TkLX5rUALdt0rrOXQWGqGlatGJjaZcN3HHYM,2067
200
- biotite/sequence/align/matrix_data/CorBLOSUM57_13p.mat,sha256=m3Es9ILTi5vCKAKjV40dLrJpZ8I0n7QaueKi0tNa1NI,1850
201
- biotite/sequence/align/matrix_data/PAM180.mat,sha256=mll_lIfL8oBzNlNcEhoh6ULv9lKG-HTBanUyJhzDO-U,2668
202
- biotite/sequence/graphics/alignment.py,sha256=Avo6hMt-JEorU4WoxtsYKh7osf5zMWwdB2zN9kVnwis,39744
203
- biotite/sequence/graphics/__init__.py,sha256=DPkWrFAJg0r8XrcJWSFpOKnd1w12ET4BLra-JtsixmE,1152
204
- biotite/sequence/graphics/features.py,sha256=qviJLDcwuB3v60x7QHWICeWMc8cyXWdvjKsTHU77pUY,17113
205
- biotite/sequence/graphics/plasmid.py,sha256=3c_Ov2KLWKrHlNNjOtPCqmqKIrK-QBGL7K8iUf_Wj28,25695
206
- biotite/sequence/graphics/dendrogram.py,sha256=KYePYWRZLNmWloq14KFFIlVEQBZDh8ViWqZKkzi5ols,7053
207
- biotite/sequence/graphics/logo.py,sha256=xrCRcB_VZffRs8RHIZE3igB5Zns57iqzxTZBaJbVnmU,4048
208
- biotite/sequence/graphics/colorschemes.py,sha256=hQDwJ147upl8_-DB4c8RRNjPWousD8J5F9Y_R4LWcps,4517
209
- biotite/sequence/graphics/color_schemes/jalview_hydrophobicity.json,sha256=FTwFLJ049NH4CFS0B5OaXtmySkE6yiluenixoNSaZSM,785
210
- biotite/sequence/graphics/color_schemes/rainbow_protein.json,sha256=C5imi4gVjtS0HVV6yQK3MOgNuOi1SPCnGDHiYqqbaU4,753
211
- biotite/sequence/graphics/color_schemes/wither.json,sha256=6dq-9koLqk6ec5WCLYzFRcnjmIYjjnLfnecZwMur3yw,842
212
- biotite/sequence/graphics/color_schemes/flower.json,sha256=S0xkRcSkM_awZxpIBQqhT4_vxnWjVKq5ZXF6VxWBY7o,842
213
- biotite/sequence/graphics/color_schemes/jalview_buried.json,sha256=SyfbSC5TSbdNudMZa6IrT0053OLJapLObuF2ERMdJmc,777
214
- biotite/sequence/graphics/color_schemes/ocean.json,sha256=oWGprmKUfhXuTuAkZezrDifhIdf3ko6LIF2yK9OqcbA,841
215
- biotite/sequence/graphics/color_schemes/jalview_prop_turn.json,sha256=q3znbzT1Hs_JRr7Juud245Be7JIiiNlZm-7XoaRssIM,779
216
- biotite/sequence/graphics/color_schemes/spring.json,sha256=7by_eGRbvdxueWB2RmSxi0mYTDpAhVglnX2jkrdw8FU,842
217
- biotite/sequence/graphics/color_schemes/clustalx_protein.json,sha256=P-PeZPcdP58RYgESclfNIVF1S84LxGqGzhBNEYaRyVY,704
218
- biotite/sequence/graphics/color_schemes/jalview_taylor.json,sha256=q9GXPg8OaeE6SvWPvdKxBU1hHmHSNNVaiPTmmJu4pP0,702
219
- biotite/sequence/graphics/color_schemes/jalview_prop_helix.json,sha256=mZrFbuArC56OOtdxZ0m3hQs35RTR0sCATgbaq5DfsYM,780
220
- biotite/sequence/graphics/color_schemes/rainbow_dna.json,sha256=xG5qNN6Zov99pgEkna2jws7Vdp5cfYhKaUaPkyq9Nzw,248
221
- biotite/sequence/graphics/color_schemes/sunset.json,sha256=HnKftW6Mv52-fhqgIElQV0yW8cYMqtksPShG12zW7Is,842
222
- biotite/sequence/graphics/color_schemes/pb_flower.json,sha256=43xTI6C5J1YDdH3gnlUgfOTeZm9gCwhy6K-YC9pRgdc,663
223
- biotite/sequence/graphics/color_schemes/blossom.json,sha256=NneinRHISSkgrdCDtaxNCCaF6-9Ya_9PlKKKR6LweXc,843
224
- biotite/sequence/graphics/color_schemes/jalview_prop_strand.json,sha256=83GsLW_LOC4156kX4hVXUa4LUmoJm9FhOgyXrmXOR-E,781
225
- biotite/sequence/graphics/color_schemes/autumn.json,sha256=usp-Y70tk39LCJV64vi7t3wd0pcf7kOjEE8dZhAbryM,842
226
- biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9CILWaiY3QkB35wYEq2kbWEDqYjm-4,701
227
- biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
228
- biotite/sequence/phylo/nj.pyx,sha256=s6hoo_7s3VFy-7Hgq9lKtUVXTZ-To8Dxwytk-ohfWYI,7281
229
- biotite/sequence/phylo/nj.cpython-311-darwin.so,sha256=PAEzypq2Ns8Naai1dOHeTx0kgPYjVwSSgN8IN-u4xAU,232504
230
- biotite/sequence/phylo/__init__.py,sha256=BNU2f9wzpkX2VngUFux7A7CvnBkzU78ziMXLLVNsJuA,1260
231
- biotite/sequence/phylo/upgma.pyx,sha256=86QxGjj8fcGRhze7vZfqw8JLjLAZUevhkWDmzTy357E,5213
232
- biotite/sequence/phylo/tree.pyx,sha256=4e4Bhlm1qWY0Wvj6JqDE9jVwP6lEUmE8lIHEUmRNLwU,39206
233
- biotite/sequence/phylo/tree.cpython-311-darwin.so,sha256=jHelSn8tN3dNzuCTYDlXOvKNJv4JvRoJu-B23YkifW4,287768
234
- biotite/sequence/phylo/upgma.cpython-311-darwin.so,sha256=whgndhkraJ-xMgLBuWjyVgAc4X62RFRPX7iOg9ARu7c,212776
235
- biotite/structure/repair.py,sha256=5tWFQVdw2SGENO0eQexe4Dni_bDpZdT0UfA59rDgJGo,7736
236
- biotite/structure/superimpose.py,sha256=UnXZVoUgucOnqD7PN3wdCmeS3zXZpNsXRpP9CH6oc1U,26153
237
- biotite/structure/sasa.cpython-311-darwin.so,sha256=-LKWMUF-FpPV6CFoS-yEJiVEy3L_InYiQuL09Co-rS0,272328
238
- biotite/structure/chains.py,sha256=OdOLduRjKyP1GZvN_QjngWUC3hTYp3cMQuvyKuNRqj8,8807
239
- biotite/structure/box.py,sha256=svbwAtZdH-10hPRWOACID_OM8-C329NCB__P0hZNwW8,18742
240
- biotite/structure/error.py,sha256=rdNJb21D9kPTSsbF3-RQmMGegjc46jXnYEvLDIPIXJw,774
241
- biotite/structure/resutil.py,sha256=M7BkVAaBs3iHtFjopGQAxXbUrq_QSoeedhz7_z0ZDSg,5602
242
- biotite/structure/util.py,sha256=0iSSG46xH3JmW83QRYUSZpO_hR5Yn9TpAA8-jajZsi8,2258
243
- biotite/structure/sequence.py,sha256=s_ugDoGWYWTfUprxOOR-fv422qFkQFkOshLQ0yXXw4Q,4152
244
- biotite/structure/sasa.pyx,sha256=fEUWuLtqjEmviPuL57lLuLdopndW-b7xtzvCr0vfQtk,12984
245
- biotite/structure/celllist.cpython-311-darwin.so,sha256=rfOPVhd13qoVFkVGWsWYMivi7eUnbogRGvTPxcimEc4,315872
246
- biotite/structure/__init__.py,sha256=x60JjCz9II2kvycGwLHvdWMOKsF3Oqdy9oPbqXMskuU,5323
247
- biotite/structure/mechanics.py,sha256=wQIK33d6NhJNTxqr6fSashXrlraLJC3-xcfCXM6ZPqA,2702
248
- biotite/structure/sse.py,sha256=8fa1-bRax5nZQKYRqr893ymn-Uv1SASg3yKx8HDi5dg,11963
249
- biotite/structure/bonds.cpython-311-darwin.so,sha256=YEugTLPcb6g37_49ZgmKZo2d31H--IFPt3EUGKfUm9w,591880
250
- biotite/structure/charges.pyx,sha256=RpCz4sVOiwmZeVTcMAapiWJFVBPAK0gAAiNoNZuxZWA,18822
251
- biotite/structure/density.py,sha256=TLKvLLbKRWDmH_A0mSFZeHkmbFb49lyyiL7Eeu-mLEg,4234
252
- biotite/structure/rdf.py,sha256=dS99s-n_N9zunYn5AQffXdEkapmUizGkugGLj9EDXBo,8059
253
- biotite/structure/transform.py,sha256=4xlUbN1JiLqw1Tc-qFKNWj2qBJb0jXadW_LuJWHcsQc,19767
254
- biotite/structure/geometry.py,sha256=yWHq7u50_TqqpFpG4ARVZNqCal9JFJWnRyYADdvgEYs,25256
255
- biotite/structure/molecules.py,sha256=_p09r_BmyMs6QcbxrZhGuT2qwR8oQrgHV2OMQ5W7U9g,15478
256
- biotite/structure/filter.py,sha256=k0BpA7E980Yzyt5EE8KQTlyhs0XOud3G5jdq6mRzTwM,18716
257
- biotite/structure/bonds.pyx,sha256=J3Eadh9DF7Sn4zTAa9LxW9OBYbaGLZfDIaIg34Oxlpg,68420
258
- biotite/structure/atoms.py,sha256=dg_aTxzrRZ25jv2oH_x3NmfIHb0AAexqlz4_Pwo4iJE,47822
259
- biotite/structure/charges.cpython-311-darwin.so,sha256=U1bSqWwk2d59I93H43LWuqGUkL0S097oUHZDH7qRIK0,276416
260
- biotite/structure/pseudoknots.py,sha256=C8Id-1QyNBDuQNRCumspE_RoXuDNqJ-eFEimuzFdLIo,22380
261
- biotite/structure/basepairs.py,sha256=7TK4E-PXjt0GwE1JOE_AUfKmbrUY1IE9Tc6I9HLpb2s,50148
262
- biotite/structure/integrity.py,sha256=Z1g7HLB-nFtCWXbhZ2QyVML9jvnXty6YwO_FTpaWfzc,8609
263
- biotite/structure/compare.py,sha256=eBUGhlTSYApvoKoZ4LnMI5Ku2sB9aCeQ-V7Fcld4YiM,9502
264
- biotite/structure/hbond.py,sha256=zkJ1NLaOGhpwUz7WFd6ATihlJ44GGEZ9rRc9JRZ_PzE,15162
265
- biotite/structure/dotbracket.py,sha256=dzuqP1J51sq85Ng0J7IfWUXT103gIjuQsare99-jeOU,6885
266
- biotite/structure/residues.py,sha256=dywbV7cTrJSNBAugC012gKrx_GrMZOcs7J76ojBM2AY,22370
267
- biotite/structure/celllist.pyx,sha256=PCK5hx4QyuRrernfP_ty-w2ZRG5Qyn5dmibRwdVKXsE,34461
268
- biotite/structure/io/trajfile.py,sha256=9hAnnKKycYXqEyaPoy3CxYJHC_PA9d_iUSmIstJfqFU,25694
269
- biotite/structure/io/__init__.py,sha256=ROMPxtVLBLjvMWskQefRcSjeLlzAJP9H1lTWokp9oIc,1034
270
- biotite/structure/io/ctab.py,sha256=-a0OTessNZhNo76hPKWh5x-x6wKfGDLwGeDT52jRZHM,2183
271
- biotite/structure/io/general.py,sha256=GOhYOAwifEqztKEGl2Iweocm27P6eOZLnRZCb4Zof4o,9066
272
- biotite/structure/io/dcd/__init__.py,sha256=APOO_JGG2CyUCLF4xCPmA-Ji79r4rAUaoSXajzkOEWg,387
273
- biotite/structure/io/dcd/file.py,sha256=JLAOdn4LkTfXqIEvbwtRHiXvRcJYEcFwr7kaIKOmC-g,2170
274
- biotite/structure/io/trr/__init__.py,sha256=ut-5WHHpk0n1Vs6zHhi4RnNHb3NQsLH8iVclcmkEbQE,358
275
- biotite/structure/io/trr/file.py,sha256=kE4pOoJJL6eKtPHcSRyirTK4Tsrv_mMJOhTY8gxidMM,1302
276
- biotite/structure/io/pdbx/legacy.py,sha256=01mS2bA5_GptHDpe_F7_6IyueQ8_tlgB_X_m9dRa694,8842
277
- biotite/structure/io/pdbx/bcif.py,sha256=M2eKDdirtPtvS16z-4V79m7XYB7AtlYNS2c0x84COls,20062
278
- biotite/structure/io/pdbx/convert.py,sha256=jrBqyx5vEnZLr81MXeZxjHrubmGzph3KNKYQm6c2Eyc,59757
279
- biotite/structure/io/pdbx/encoding.pyx,sha256=KMfSe853yRKRCKzBNOl-JWtep7_i7Z0rzFFu6Tct0vE,28725
280
- biotite/structure/io/pdbx/__init__.py,sha256=2rl6Fn2aPcu8-2QtgIVzjCOPVdvCWfqZh3LJr43TUP8,714
281
- biotite/structure/io/pdbx/cif.py,sha256=OuL9csoC1BsyMutILRnPL433LPvNxcTwnJcv-RzLpao,32437
282
- biotite/structure/io/pdbx/component.py,sha256=vS_aicTCme52-nqfjJPz4ZhKhbBZYHU7kOVLUOU7ypA,8143
283
- biotite/structure/io/pdbx/encoding.cpython-311-darwin.so,sha256=7TqiLYaCCVO3AQnYe35pK-TGEFEOV5PmcYHMvOeNGPk,1162144
284
- biotite/structure/io/tng/__init__.py,sha256=7JZqpfMSSlQItvolf_JGn2PRrAh1P_1AX1C18Oo5uww,356
285
- biotite/structure/io/tng/file.py,sha256=ulIW3m1wfSARQoNQwhE2TcLnDyWf7U3Q6_pN4tgSb9I,1302
286
- biotite/structure/io/npz/__init__.py,sha256=WBUmxbb3qaFjLdAQwzYhVI_vh8w7gMZRlcpNZBYBc0s,736
287
- biotite/structure/io/npz/file.py,sha256=5xrKj7raPsby5U7sIyeilfsbCx0w_bcR8QG8anE2eQQ,4958
288
- biotite/structure/io/xtc/__init__.py,sha256=nHU9y_f75FMJpnY9Gngu1J39dfbXF3fZsSulvpWK7Qk,356
289
- biotite/structure/io/xtc/file.py,sha256=OTsBk_xscSgcThKrAYYjYqTDw-g4yM5WBr2PKBhnWS0,1298
290
- biotite/structure/io/pdbqt/convert.py,sha256=IihHFIwMJuBrdGjZ6NRID8O8Ti-3QgILX184rMaYHzY,4027
291
- biotite/structure/io/pdbqt/__init__.py,sha256=n0-GSBidNVDNOsTo3oHGSv6agAFn2_duOvwykSX3mlc,440
292
- biotite/structure/io/pdbqt/file.py,sha256=mSeaAXfgYH0SDKTiIH-TvKgMbJeWkoUbqngE7RHKu7Q,26399
293
- biotite/structure/io/netcdf/__init__.py,sha256=Vzr56ymoVeSlXqEF-nhPJFPBjxSFWuyD9uy8QpzhFyU,349
294
- biotite/structure/io/netcdf/file.py,sha256=AW2TX7qubiDqI27Q9zknC4zE5mrZetjk8U6QNhqUnpg,2156
295
- biotite/structure/io/gro/__init__.py,sha256=lY39nljfVlWbHsR4RKAM3rRJzZdQliRevVzZM1MT-eY,407
296
- biotite/structure/io/gro/file.py,sha256=AEmYhsl1ieO1OJ1sg4pSCDt2j9Iguurnhn-aFCqAFCM,12800
297
- biotite/structure/io/mol/header.py,sha256=l-1vqEEnxgJ6KhWFfkf3xATf-SETOERB-apS_npFnwg,3381
298
- biotite/structure/io/mol/convert.py,sha256=vPS3ZzbVX9qpWj4f5lz0_XtZ_GW6WkBJMfcqCbC8eYM,3781
299
- biotite/structure/io/mol/__init__.py,sha256=fuqvVcydfrxekEsU7qAQ2Zb9sYX3vfQ1uygG20wJNZg,581
300
- biotite/structure/io/mol/ctab.py,sha256=retJO8KrIgpg9FxjvrRnCeI6BwqYo43Duh2Kfv_B2Ik,13532
301
- biotite/structure/io/mol/mol.py,sha256=_55esbURwK1sNWkSopDR6WOpOOPdGXwaDW74_-pWrgg,6293
302
- biotite/structure/io/mol/sdf.py,sha256=VnjBg1vTVwsLEAYQAM24d_dZIMOWp3dYkYGHChD_slU,32296
303
- biotite/structure/io/pdb/convert.py,sha256=jysm2PrrfyzYy3ZmkIiMuOEoaSdID5qDkJ7LHI3WavA,10659
304
- biotite/structure/io/pdb/__init__.py,sha256=2qtLwVQu10AZhk-DUAqcIbvofyIC8BKGh4Gk9b_Ha70,732
305
- biotite/structure/io/pdb/file.py,sha256=9dhv1uEApagyZsBKC1_yr0ARy8hfEnW5eJMpHX78-YM,48003
306
- biotite/structure/io/pdb/hybrid36.pyx,sha256=BKV7oh0xrrjqVrkhTn7KEolon57fUhlG4Yf0Tf22wuU,8036
307
- biotite/structure/io/pdb/hybrid36.cpython-311-darwin.so,sha256=qki8C3XLWNdHbegNtBD-9d42KtEx9PYJwbgC8o0u-zE,210096
308
- biotite/structure/io/mmtf/convertfile.pyx,sha256=kM8xwb8_OSqMoYYtSE-Q3GxDwrPRVareaLFnujKp-iM,19173
309
- biotite/structure/io/mmtf/encode.pyx,sha256=yZoaDbplgjV63GhsZP9GuajEB2ieab1UrvlMr75dPXM,6396
310
- biotite/structure/io/mmtf/convertfile.cpython-311-darwin.so,sha256=PU31MrNdlOYqaXd_g5p-d5hZsbaNhMFsCK0ow32y9ac,331488
311
- biotite/structure/io/mmtf/encode.cpython-311-darwin.so,sha256=IzbZqGmEQLisohiZeQQ35gAvzCSrEbP6vtOqjJbFpfA,256336
312
- biotite/structure/io/mmtf/decode.pyx,sha256=MH5uPGOsMOLleZCgoM4FswDqT2LFUVwuJrTznKfHR6s,5403
313
- biotite/structure/io/mmtf/__init__.py,sha256=5kmc5agVc7eCUhtA0DCKIj7eR8qlvaqIIaJXUHFnc6k,662
314
- biotite/structure/io/mmtf/convertarray.pyx,sha256=Z4gBHAoo1_OPDP3vHQvOp9s-3N5PRXh5MJillUg1q8Q,12084
315
- biotite/structure/io/mmtf/decode.cpython-311-darwin.so,sha256=JWwcYB5OtTCn0tElUtv3g9SPt5NU9f7LGp5dGOHG1xU,280832
316
- biotite/structure/io/mmtf/file.py,sha256=mMNUCXx6cKptqqcfteE_2i-e_PPwDAyVFLebZnvoQS4,6946
317
- biotite/structure/io/mmtf/assembly.py,sha256=HYVy2Knir1TqWT_NfvrmUmR2UX8eFNzVmQImSLZP-7w,8184
318
- biotite/structure/io/mmtf/convertarray.cpython-311-darwin.so,sha256=TRmtu-gZGnKC-SaE_Hy1UdpHmX8TOBVJk_TLTvtFHpc,188160
319
- biotite/structure/info/misc.py,sha256=bmG6nycH8s49lAxEwMVnNLCIz95VMCR1EIDQeVyWUyo,3490
320
- biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
321
- biotite/structure/info/__init__.py,sha256=k57tfM03apKfR3UlJMoDXZHS6jilhkeni1DoQa_nWLs,702
322
- biotite/structure/info/groups.py,sha256=DnjqMvT1Xx3a_J2Ej6mYMvbqbpBgLL0gRDvL4rStJMI,1995
323
- biotite/structure/info/radii.py,sha256=GlTPOCvtqGy7PQJlTOZA57PXg7xPLwKYEy0wcrCmiEc,5648
324
- biotite/structure/info/standardize.py,sha256=AaYn7mx6Y6NylkeOg1kIpyNoI-KrWbGSXXu_GEcSAZw,7772
325
- biotite/structure/info/bonds.py,sha256=YDcRf480_M_Sl7j3uoZ7aJZbpfAg4n6tyVoD3ijFtNk,4651
326
- biotite/structure/info/masses.py,sha256=dnZbg4k_89SuTwFUulyTKAL6Mnk4POPMIVhJLl5xswA,4489
327
- biotite/structure/info/atoms.py,sha256=qPCAgGF1Rd6e7mIzyBmXF1zMZy6pgX8E3wDeDvC1asU,2568
328
- biotite/structure/info/ccd.py,sha256=cKDnfctL_U8_2_bukWAi8pU0ppRWqMFcnxb1TTjA8uc,2982
329
- biotite/structure/info/ccd/components.bcif,sha256=xgvErxils9GNg5s0sGI33B7w4lWeUBZRksPer3japnE,35649254
330
- biotite/structure/info/ccd/amino_acids.txt,sha256=RUyolncqbsplkY2hlajjOSciigyZEYL1GCx_f63jXx4,6669
331
- biotite/structure/info/ccd/README.rst,sha256=sfFRGesjpATIp5S8kiEV7cr-Jb51fWLGT4KypmzsoPM,342
332
- biotite/structure/info/ccd/carbohydrates.txt,sha256=bh5Vc84tETB-FKUm6H1brBN6zM5a2zzzwuWyb0MXaLA,4544
333
- biotite/structure/info/ccd/nucleotides.txt,sha256=Q7Zjz45BAO6c2QDAgvYdKtWAqmjQxy2NQ6r-bsZRqv4,3136
334
- biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
335
- biotite/structure/graphics/rna.py,sha256=bhIHoB_9sFuZPrHQ8qQnToRiTCfgQ7JLVNIdsQVvkw8,11888
336
- biotite/structure/graphics/atoms.py,sha256=nMhbmnjytxEDkxTTm2wHM2dObSw3izjvRbqssCW876E,8171
337
- biotite-0.41.2.dist-info/RECORD,,
338
- biotite-0.41.2.dist-info/WHEEL,sha256=FADWsAbCknuFYRiPIqUqs7TwHvSgFIOpRdMEMMJW_gY,105
339
- biotite-0.41.2.dist-info/METADATA,sha256=14dd4QiSzA1brN6Yz41ycwhYy1_ZaxQWZyybLdrgtZM,7138
340
- biotite-0.41.2.dist-info/licenses/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534