biotite 0.40.0__cp312-cp312-macosx_11_0_arm64.whl → 0.41.0__cp312-cp312-macosx_11_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of biotite might be problematic. Click here for more details.

Files changed (90) hide show
  1. biotite/__init__.py +1 -1
  2. biotite/database/pubchem/download.py +23 -23
  3. biotite/database/pubchem/query.py +7 -7
  4. biotite/file.py +17 -9
  5. biotite/sequence/align/banded.c +117 -117
  6. biotite/sequence/align/banded.cpython-312-darwin.so +0 -0
  7. biotite/sequence/align/cigar.py +60 -15
  8. biotite/sequence/align/kmeralphabet.c +117 -117
  9. biotite/sequence/align/kmeralphabet.cpython-312-darwin.so +0 -0
  10. biotite/sequence/align/kmersimilarity.c +117 -117
  11. biotite/sequence/align/kmersimilarity.cpython-312-darwin.so +0 -0
  12. biotite/sequence/align/kmertable.cpp +117 -117
  13. biotite/sequence/align/kmertable.cpython-312-darwin.so +0 -0
  14. biotite/sequence/align/localgapped.c +117 -117
  15. biotite/sequence/align/localgapped.cpython-312-darwin.so +0 -0
  16. biotite/sequence/align/localungapped.c +117 -117
  17. biotite/sequence/align/localungapped.cpython-312-darwin.so +0 -0
  18. biotite/sequence/align/multiple.c +117 -117
  19. biotite/sequence/align/multiple.cpython-312-darwin.so +0 -0
  20. biotite/sequence/align/pairwise.c +117 -117
  21. biotite/sequence/align/pairwise.cpython-312-darwin.so +0 -0
  22. biotite/sequence/align/permutation.c +117 -117
  23. biotite/sequence/align/permutation.cpython-312-darwin.so +0 -0
  24. biotite/sequence/align/selector.c +117 -117
  25. biotite/sequence/align/selector.cpython-312-darwin.so +0 -0
  26. biotite/sequence/align/tracetable.c +117 -117
  27. biotite/sequence/align/tracetable.cpython-312-darwin.so +0 -0
  28. biotite/sequence/annotation.py +2 -2
  29. biotite/sequence/codec.c +117 -117
  30. biotite/sequence/codec.cpython-312-darwin.so +0 -0
  31. biotite/sequence/io/fasta/convert.py +27 -24
  32. biotite/sequence/phylo/nj.c +117 -117
  33. biotite/sequence/phylo/nj.cpython-312-darwin.so +0 -0
  34. biotite/sequence/phylo/tree.c +117 -117
  35. biotite/sequence/phylo/tree.cpython-312-darwin.so +0 -0
  36. biotite/sequence/phylo/upgma.c +117 -117
  37. biotite/sequence/phylo/upgma.cpython-312-darwin.so +0 -0
  38. biotite/structure/__init__.py +2 -0
  39. biotite/structure/bonds.c +1122 -913
  40. biotite/structure/bonds.cpython-312-darwin.so +0 -0
  41. biotite/structure/celllist.c +117 -117
  42. biotite/structure/celllist.cpython-312-darwin.so +0 -0
  43. biotite/structure/charges.c +117 -117
  44. biotite/structure/charges.cpython-312-darwin.so +0 -0
  45. biotite/structure/dotbracket.py +2 -0
  46. biotite/structure/info/atoms.py +6 -1
  47. biotite/structure/info/bonds.py +1 -1
  48. biotite/structure/info/ccd/amino_acids.txt +17 -0
  49. biotite/structure/info/ccd/carbohydrates.txt +2 -0
  50. biotite/structure/info/ccd/components.bcif +0 -0
  51. biotite/structure/info/ccd/nucleotides.txt +1 -0
  52. biotite/structure/info/misc.py +69 -5
  53. biotite/structure/integrity.py +19 -70
  54. biotite/structure/io/ctab.py +12 -106
  55. biotite/structure/io/general.py +157 -165
  56. biotite/structure/io/gro/file.py +16 -16
  57. biotite/structure/io/mmtf/convertarray.c +117 -117
  58. biotite/structure/io/mmtf/convertarray.cpython-312-darwin.so +0 -0
  59. biotite/structure/io/mmtf/convertfile.c +117 -117
  60. biotite/structure/io/mmtf/convertfile.cpython-312-darwin.so +0 -0
  61. biotite/structure/io/mmtf/decode.c +117 -117
  62. biotite/structure/io/mmtf/decode.cpython-312-darwin.so +0 -0
  63. biotite/structure/io/mmtf/encode.c +117 -117
  64. biotite/structure/io/mmtf/encode.cpython-312-darwin.so +0 -0
  65. biotite/structure/io/mol/__init__.py +4 -2
  66. biotite/structure/io/mol/convert.py +71 -7
  67. biotite/structure/io/mol/ctab.py +414 -0
  68. biotite/structure/io/mol/header.py +116 -0
  69. biotite/structure/io/mol/{file.py → mol.py} +69 -82
  70. biotite/structure/io/mol/sdf.py +909 -0
  71. biotite/structure/io/pdb/file.py +84 -31
  72. biotite/structure/io/pdb/hybrid36.cpython-312-darwin.so +0 -0
  73. biotite/structure/io/pdbx/__init__.py +0 -1
  74. biotite/structure/io/pdbx/bcif.py +2 -3
  75. biotite/structure/io/pdbx/cif.py +9 -5
  76. biotite/structure/io/pdbx/component.py +4 -1
  77. biotite/structure/io/pdbx/convert.py +203 -79
  78. biotite/structure/io/pdbx/encoding.c +117 -117
  79. biotite/structure/io/pdbx/encoding.cpython-312-darwin.so +0 -0
  80. biotite/structure/repair.py +253 -0
  81. biotite/structure/sasa.c +117 -117
  82. biotite/structure/sasa.cpython-312-darwin.so +0 -0
  83. biotite/structure/sequence.py +112 -0
  84. biotite/structure/superimpose.py +472 -13
  85. {biotite-0.40.0.dist-info → biotite-0.41.0.dist-info}/METADATA +2 -2
  86. {biotite-0.40.0.dist-info → biotite-0.41.0.dist-info}/RECORD +89 -85
  87. biotite/structure/io/pdbx/error.py +0 -14
  88. {biotite-0.40.0.dist-info → biotite-0.41.0.dist-info}/LICENSE.rst +0 -0
  89. {biotite-0.40.0.dist-info → biotite-0.41.0.dist-info}/WHEEL +0 -0
  90. {biotite-0.40.0.dist-info → biotite-0.41.0.dist-info}/top_level.txt +0 -0
@@ -1,12 +1,12 @@
1
- biotite-0.40.0.dist-info/RECORD,,
2
- biotite-0.40.0.dist-info/WHEEL,sha256=Vo9YTsjXxZ5SWdH4n69oS5jU3YTIi3eHk0n-aUcTtlw,110
3
- biotite-0.40.0.dist-info/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
4
- biotite-0.40.0.dist-info/top_level.txt,sha256=Tvj5T6Zfz3AhevTRlDRVhNC1WgPlFk-wDtSkzTgFM8w,8
5
- biotite-0.40.0.dist-info/METADATA,sha256=F_Wg3VF0txg1mUbDMmCGUR4_Omt6fNY_xpNmUqEeMoQ,7151
1
+ biotite-0.41.0.dist-info/RECORD,,
2
+ biotite-0.41.0.dist-info/WHEEL,sha256=Vo9YTsjXxZ5SWdH4n69oS5jU3YTIi3eHk0n-aUcTtlw,110
3
+ biotite-0.41.0.dist-info/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
4
+ biotite-0.41.0.dist-info/top_level.txt,sha256=Tvj5T6Zfz3AhevTRlDRVhNC1WgPlFk-wDtSkzTgFM8w,8
5
+ biotite-0.41.0.dist-info/METADATA,sha256=aDKbtvmKoRovoSXYPhKN_VjcLFM8XkfPSmqKV0X9zQ4,7152
6
6
  biotite/copyable.py,sha256=Rmsso_e9quxWc23SBQh2M45jTT36SerwSmt3ONng04M,1972
7
- biotite/__init__.py,sha256=xHwZNZlRcAlkSZFw6EMrVf5GqBoft7VfnmLDkqxF2Fo,522
7
+ biotite/__init__.py,sha256=O2aZEDRPWHZaO2ApwDuoh6i-zEjYXqKJBtp6zMqPg6s,522
8
8
  biotite/visualize.py,sha256=mLME6fOGwdcUZLUzDTbwUpZokC4D1cVE6ICdtJDc0yw,9842
9
- biotite/file.py,sha256=flQknYLaLSlbX38D8_I3fG9DAo4D3ExeoRzweMoZMno,7335
9
+ biotite/file.py,sha256=te0tI2Qdh9JQlwe_FgkyWIU6RG6WYgWNbAj3GF3wzh0,7429
10
10
  biotite/temp.py,sha256=AenIC7m3rrezikJDKgTEnLZigACubfsw_UcmYMGyGa8,2045
11
11
  biotite/database/error.py,sha256=oEJGj28R9VRkLt_DcsqNsf-rwHe3E2ma5uduzqAgZ1w,408
12
12
  biotite/database/__init__.py,sha256=_C25CsDE8O_770Vmk6sCK4FKlQ0A1hUhWaMRPOvkDtM,724
@@ -21,8 +21,8 @@ biotite/database/uniprot/query.py,sha256=bzJenXwN3iKLxwJT9uaB19LBam8GRYWfeBzS_Py
21
21
  biotite/database/uniprot/download.py,sha256=rWrgLrDCnItLe5fU3_oSZvYJToqWmqfffN5JvBumdyM,4378
22
22
  biotite/database/uniprot/__init__.py,sha256=Lsk5Jd-qb5167VTgN48lWSSbqpjCM-fD0XKJyxaZb7o,334
23
23
  biotite/database/pubchem/error.py,sha256=5kLtd9r3KkR9PZfTEfaRA5LRIG2K-XQKqiEBZZ0pd4g,711
24
- biotite/database/pubchem/query.py,sha256=odzR1G-psQnMAcWL97pj_xc9BH6sUlgru1vg4SD00Vc,26440
25
- biotite/database/pubchem/download.py,sha256=rio_-ykW1xAZhhWcd-U88NYrwcI1lsJNrG75PEuGRfc,10117
24
+ biotite/database/pubchem/query.py,sha256=PBXIMhxWxIsTZQDDsnConZbm3j7GZwYqgN_ldn9bZsk,26425
25
+ biotite/database/pubchem/download.py,sha256=gRNWiHlMMWWCDBjgsAmtvygkM3Agc8yQeuwV2VKeJtQ,9997
26
26
  biotite/database/pubchem/__init__.py,sha256=Lnk0h85FzSFBu6KAG3P5ssbGfXE2lX-EMYXWCafPF0o,668
27
27
  biotite/database/pubchem/throttle.py,sha256=RzMFaBKJVWygH2QlLQEFO_EBcN7nGxj6Sq-sAB7njvY,3534
28
28
  biotite/database/rcsb/query.py,sha256=I5eAsdsW8FT-O0cKz_71dpS-HrEe0VtauliAPQMPBSo,33065
@@ -57,8 +57,8 @@ biotite/application/clustalo/app.py,sha256=tPZFZ5SP1jCE1OQlTz7WzFOmdZ5B6JHTTjaCU
57
57
  biotite/application/muscle/app3.py,sha256=tm51pw2zuDcuua-an5eaD_oBGh_PBL8vdlGdfUkXLF4,8450
58
58
  biotite/application/muscle/__init__.py,sha256=UZFXceMzefsY6Y1CokOpWC2ZgWeiM8NiCHqEzLJDeQ8,337
59
59
  biotite/application/muscle/app5.py,sha256=9tbw6XISmu9CEvFPDxoXW72HnrpAPf0MZY4jH7F8jK0,4799
60
- biotite/sequence/codec.c,sha256=CHnLyRwGKFYW8lAuFWGenZz3Wj_avp12rdXnUHXXODc,1533571
61
- biotite/sequence/annotation.py,sha256=h8e1IJhmHXoqs8yw1Y6QwFLrGcb5XF8ewDkkxPhThXo,29786
60
+ biotite/sequence/codec.c,sha256=IJDgw8XFVquijfTtmXIACMUFnh9Ai2ZL3YN_Kspie4U,1533571
61
+ biotite/sequence/annotation.py,sha256=ab49UyMA1StDMGL-67NG75FRYes4-1qM7RAqxYbPxeE,29746
62
62
  biotite/sequence/sequence.py,sha256=AbOf4a3ApXUBgflzYRux2nqpd6jDCXVAByUBkt9Jroo,11911
63
63
  biotite/sequence/profile.py,sha256=LkH-jcTmxOyWMmhTgjjF7ykmQ7KlKidAdGp3X5_Wm-4,16813
64
64
  biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
@@ -66,11 +66,11 @@ biotite/sequence/__init__.py,sha256=jwkyw2DlOVCyeZAfT5V1P-q6lZN7c7kINhNbtF2tODs,
66
66
  biotite/sequence/seqtypes.py,sha256=IlaprG0DjBhAo_Y4gMW4gPtYXaTx2TknxpYp0NM2Z9M,19590
67
67
  biotite/sequence/codon.py,sha256=IR-3WjyOohXY7FhSB7Hk5qhkQWz5bm9Isuho02SntJ8,16455
68
68
  biotite/sequence/search.py,sha256=er8lqF2WM4rFG3gixxgEnJ8yNHiWae--02TjJCNRo1c,3149
69
- biotite/sequence/codec.cpython-312-darwin.so,sha256=KDyGGE5fcpr1Jc1IVGDzbKL84ygKGW08rEvaKXpjL24,318776
69
+ biotite/sequence/codec.cpython-312-darwin.so,sha256=Hvx91g2w_6D12kXplzB3aaIuftDwNDKLzOlrcy63G4Q,318776
70
70
  biotite/sequence/alphabet.py,sha256=l4iggmKPNvfauKeRRGbJWmmrzkFldljxMBpFoRG8Uks,17785
71
71
  biotite/sequence/io/__init__.py,sha256=4K13uxFWe8IpNC8yuVxjDiI7-8lmXu7qT6iMmVSqPs4,314
72
72
  biotite/sequence/io/general.py,sha256=4HIIU6VNNfOLfVqAkg_mXzmNZZlOeJWzwsChu_dTVvc,6570
73
- biotite/sequence/io/fasta/convert.py,sha256=xNAq43nTSIpSVTOFbW1AwOvgQPZulvTmPD1eNWpyON8,9450
73
+ biotite/sequence/io/fasta/convert.py,sha256=saQmgRHqnhqqTmbSf3rn4_m6RcVulGEFeVK7g928rdI,9433
74
74
  biotite/sequence/io/fasta/__init__.py,sha256=rq4Pze3xj0Yj4bvh6BgNe-ZVO4yTfchpDOtlz-EGzmo,719
75
75
  biotite/sequence/io/fasta/file.py,sha256=JYTeHugajnSJ9lwSwcVgsBBEei9pf9S4LWZrM2VH0Vs,9437
76
76
  biotite/sequence/io/gff/convert.py,sha256=BnAMkQl7mVO6b2vupznhDyd5-tpbhYKstCRMmhlEmOM,4699
@@ -84,35 +84,35 @@ biotite/sequence/io/genbank/file.py,sha256=lY5LPFJU7q1mGWkE_iF8XQgBzkY_3aOFCxI9n
84
84
  biotite/sequence/io/fastq/convert.py,sha256=eluwgaDZggVNaBmyNWYioxsvcajJfqWTqTU12BP__yo,3767
85
85
  biotite/sequence/io/fastq/__init__.py,sha256=B_X3WAWxlHkYWJAO7Aeb22RWtsx79y7s6TnmcIP4IGQ,587
86
86
  biotite/sequence/io/fastq/file.py,sha256=a_tk-RyqcJn0ioRe68V6ET3g8if3i5L_Dg0HAjrLw14,19115
87
- biotite/sequence/align/banded.c,sha256=Lx01w-j7NyXtUQPxeY-vYv5h_k8nt26dOQve1XmTVug,2583113
88
- biotite/sequence/align/localungapped.c,sha256=mYe5D-O-MThCLc34vVJDZDPs6bOUhylX_3IQIy3vitI,1610419
87
+ biotite/sequence/align/banded.c,sha256=ILGkAE_bkDuzxpD1bUvwENHjUJm7eXCGUT2URquznxY,2583113
88
+ biotite/sequence/align/localungapped.c,sha256=cJwrHMIiv2cvKGFih8aG7ufPr8jWw64MoVKV15TvopU,1610419
89
89
  biotite/sequence/align/matrix.py,sha256=fYfhqeuMZJEYJsaTFgbRLnu3BBFx97UANfIhGxHT7l0,13287
90
- biotite/sequence/align/pairwise.cpython-312-darwin.so,sha256=ok8sDcpp5chw3djXRGM168Db2aqkNRRTHb0RJT8v3-k,631067
90
+ biotite/sequence/align/pairwise.cpython-312-darwin.so,sha256=RKeH4aC53SdYiKhDNviCGYBU9ibTAuGI_XPfuo0CjQE,631067
91
91
  biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
92
- biotite/sequence/align/localgapped.c,sha256=HlAXw6zn2b_s3vLnlNADbwmAacX6DKjmCZ2-zdJJ4eU,4604175
93
- biotite/sequence/align/localgapped.cpython-312-darwin.so,sha256=0inlkDO5ohdL_7vnPGAtZYuzkDncHt7sctuG-BnyR74,1130750
94
- biotite/sequence/align/banded.cpython-312-darwin.so,sha256=sP4QjF7cxaWBvaiVd9rUrk-VYU5bsevpQo749YBUKzc,578025
95
- biotite/sequence/align/localungapped.cpython-312-darwin.so,sha256=7hd8Ra-QZdNDteDAa7OZlcJZTcHiVyVtZ57kbgxcPUg,321328
92
+ biotite/sequence/align/localgapped.c,sha256=gzQfZqot82TUvSVfuHB4WX-_3_l5uIgmK5P_-sUT31k,4604175
93
+ biotite/sequence/align/localgapped.cpython-312-darwin.so,sha256=aRaAXjwMd3ZXmueVVq17bsvS9ur6acEWj44jztPBbio,1130750
94
+ biotite/sequence/align/banded.cpython-312-darwin.so,sha256=949f9iSRl6T48tzalQdc84FhkpzqiZXG7h9O1x9vyhU,578025
95
+ biotite/sequence/align/localungapped.cpython-312-darwin.so,sha256=1VWMqGkAimaYS15YB3Jg5YwK_mhGnYQFWsNgZU8Wc-I,321328
96
96
  biotite/sequence/align/alignment.py,sha256=MF_3R2MMjuwwvG7j4pybQjdPCTk2fAwg_4gW-muzKfA,21338
97
- biotite/sequence/align/permutation.cpython-312-darwin.so,sha256=Th6s4yqH5XiSrqR2SOYfwyOI1RLHOgFVurAjvDZFxhU,250350
98
- biotite/sequence/align/multiple.cpython-312-darwin.so,sha256=zZCN6v7gbadp3QjPTG9xwxxvaxV2roNoirtYVDyxVnc,546715
99
- biotite/sequence/align/kmersimilarity.c,sha256=Mrh07wdD3OGKS7G8EoSZnTOBeJ63uvt52cDBK56G20Q,1259825
100
- biotite/sequence/align/kmertable.cpp,sha256=cG7VxjolvxZjU-p2wmL09JNzy7p8S0JyOolDh21A570,3037407
97
+ biotite/sequence/align/permutation.cpython-312-darwin.so,sha256=IHzmdjefsIr9r4f4Jh5KaeHmBYNS7cPiZebk04F8U7M,250350
98
+ biotite/sequence/align/multiple.cpython-312-darwin.so,sha256=3dpMOae8kLJ-Fnq_jnieZbaWhW27jkxA0ItA7NdKmiE,546715
99
+ biotite/sequence/align/kmersimilarity.c,sha256=b2OM4VjbVj0U53EfnS1Kx1gOgZCGmacMAGJeuTBTiUc,1259825
100
+ biotite/sequence/align/kmertable.cpp,sha256=XEJP2ldYXcSjPppz7GcXWqGgGEiMlbtemWmqbfQxjt4,3037407
101
101
  biotite/sequence/align/__init__.py,sha256=Xah34jQaYg0TPgzGnTqLPpPslx_y6CsgU836Ug5uUcM,1704
102
102
  biotite/sequence/align/buckets.py,sha256=6vIIMRT3h3t8PWaJxT3TjtA_fKtYyalBv-E4OdDOy00,2422
103
- biotite/sequence/align/kmersimilarity.cpython-312-darwin.so,sha256=-vgDxvQVG6-Cnsfo_aHi38yaDcu2XFN78UGcY2ATTPM,247681
104
- biotite/sequence/align/cigar.py,sha256=Mk3kECMKkKWxLLgIZ1hkADsz_2AJJHrAPMulfKTCA9I,12915
105
- biotite/sequence/align/selector.c,sha256=Vvkls1Mp044wjISJTuuaRlc5vX0xQAfeMZhtfC2pq1M,1637193
106
- biotite/sequence/align/tracetable.cpython-312-darwin.so,sha256=Mv7wZ6sZ3zT4dS2v9mbBhNlFQdhLaZHb32jAD1tL7lo,204941
103
+ biotite/sequence/align/kmersimilarity.cpython-312-darwin.so,sha256=rh4KTJUAYPqWL2UWFZS3X_RjhwcuMukx_ilfmfiCWI0,247681
104
+ biotite/sequence/align/cigar.py,sha256=chS5LnAwHPZmCw-zKVR4apAuSMuxaxxuoDG2w9fLWFg,14647
105
+ biotite/sequence/align/selector.c,sha256=gCzm1ECwnJ8Wkc4QImRRYh38s9NO1xTCRiiFv9hBTrc,1637193
106
+ biotite/sequence/align/tracetable.cpython-312-darwin.so,sha256=ear3SZqZh-54NHX_aQDM_xQ0R-pYKeMDIANNAMEa9kk,204941
107
107
  biotite/sequence/align/statistics.py,sha256=TalCx3RT8jozU56DMjNKM2Q-fkRiHVq4mI3Wy1YH93M,9732
108
- biotite/sequence/align/permutation.c,sha256=FOsnPuwGKIYkuSLX8WZvBuPnZjSLM2QqcCux86gF5TE,1283338
109
- biotite/sequence/align/selector.cpython-312-darwin.so,sha256=Z6Nxm7qDIhdVlDrIrP4IY5iXytO8KWlwadOsY7Av4pU,343723
110
- biotite/sequence/align/kmeralphabet.c,sha256=c9m9O5YLHsI0PhY5q1-Q2HhTCokLHGI-PbA8geaM8LQ,1917328
111
- biotite/sequence/align/kmeralphabet.cpython-312-darwin.so,sha256=YSSEP-RiFLopUUN1nsXms3G9UNF9gvyN-Xru1qsA-80,396895
112
- biotite/sequence/align/multiple.c,sha256=fhKUw5ngZaEuy74Qa503yemBqqueM0iAPMaBRzRKqJQ,2282358
113
- biotite/sequence/align/pairwise.c,sha256=utPMcDbl2hhKyURC9R9PBW7xYpPLWLFGjwQ5OvD55EI,2887229
114
- biotite/sequence/align/kmertable.cpython-312-darwin.so,sha256=JYUttKlhf7erQ2NJjQXwosGwLaJqAIeMmnOFRXTuglQ,751948
115
- biotite/sequence/align/tracetable.c,sha256=-mKULM0Gcx0z6X48Y35LEB55ds4CM0BDjPVUbZZhMN4,1223496
108
+ biotite/sequence/align/permutation.c,sha256=v3AxgizrwZpHcsTPD8J-I7RqrUk10YPo3spK5IJkWa8,1283338
109
+ biotite/sequence/align/selector.cpython-312-darwin.so,sha256=c9CEYJ6uu73dt4wYkJKuKe8fCW1cYFD5CzxUfGLxWyM,343723
110
+ biotite/sequence/align/kmeralphabet.c,sha256=ZWPz7N4T8FJBoO-2RCnP1qhjk1Et7O9xv1m_DictdRg,1917328
111
+ biotite/sequence/align/kmeralphabet.cpython-312-darwin.so,sha256=TyG_uzIcb0SjP82sdyjWuWOwX0q1OqFFPaPxJlE-aNQ,396895
112
+ biotite/sequence/align/multiple.c,sha256=PBnwonh5gnO5p-U5VVBIPF5i_7bmrO7ihuXPRnlTGtQ,2282358
113
+ biotite/sequence/align/pairwise.c,sha256=s_HLHsa_lgkCAVkzDeB6968uMxMr74ZKsGd6dpTkAm0,2887229
114
+ biotite/sequence/align/kmertable.cpython-312-darwin.so,sha256=ie_azjUujHfBCuNRoaZ2tXbs_bJWKfY-gaw33LmCfxY,751948
115
+ biotite/sequence/align/tracetable.c,sha256=rbZlanIT1HdD_KxH6IJRg7nUxYJQ_k7jK7JxG1sfspw,1223496
116
116
  biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
117
117
  biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
118
118
  biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
@@ -228,61 +228,62 @@ biotite/sequence/graphics/color_schemes/jalview_prop_strand.json,sha256=83GsLW_L
228
228
  biotite/sequence/graphics/color_schemes/autumn.json,sha256=usp-Y70tk39LCJV64vi7t3wd0pcf7kOjEE8dZhAbryM,842
229
229
  biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9CILWaiY3QkB35wYEq2kbWEDqYjm-4,701
230
230
  biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
231
- biotite/sequence/phylo/nj.c,sha256=Rx6pNLsYCsGvmuU3k5pzWknUgE6Dkl4RNPiYoF1Zu4w,1228289
232
- biotite/sequence/phylo/tree.cpython-312-darwin.so,sha256=Khup9cjZm-Dxcz_9B1RN6gPXXd2rLCbc88DlCkLQJHg,301111
233
- biotite/sequence/phylo/upgma.cpython-312-darwin.so,sha256=GDqzoPGYuRba4xtXFuIETAEwStYDnfAhMKStN8V1iIA,227704
231
+ biotite/sequence/phylo/nj.c,sha256=8frmEHeYny4HCk4UR3uXuuNuOSGDAX2JLfRFcvnTpfU,1228289
232
+ biotite/sequence/phylo/tree.cpython-312-darwin.so,sha256=ZHEHL0Gsco4TaIn9KVMUkIQxfPLI7l9lSc857MilL5s,301111
233
+ biotite/sequence/phylo/upgma.cpython-312-darwin.so,sha256=5nmwRAv8mMdMoeiLrWfpGac0GohekMHdsL-3AmMEOso,227704
234
234
  biotite/sequence/phylo/__init__.py,sha256=BNU2f9wzpkX2VngUFux7A7CvnBkzU78ziMXLLVNsJuA,1260
235
- biotite/sequence/phylo/upgma.c,sha256=SoHKmmMstMeA6CS7pmKgqWtNnc0-J4ADb8aCFfVUNcs,1175817
236
- biotite/sequence/phylo/tree.c,sha256=9BswsOcBl1TzujAtOgPwSzQe68coWSzykpQsDygSmHc,1220726
237
- biotite/sequence/phylo/nj.cpython-312-darwin.so,sha256=k1q0kfMvmtfH6Zo7ooIph2HydiWDpktflYOwf0ttJ-E,245669
238
- biotite/structure/superimpose.py,sha256=ml5-GE8F2ozVgKsbB1LEVfi4P2WhpNGrxnkQUXL6C-4,9084
239
- biotite/structure/bonds.c,sha256=dQ6EsL_NzOzk4Oup9g6ZxT--X2GTrWeRunZvpkY5snA,2543375
235
+ biotite/sequence/phylo/upgma.c,sha256=w6WqKGR9JJDEgxpw_bdDPqIhTFhdDGZiKVE2ZAPxB3s,1175817
236
+ biotite/sequence/phylo/tree.c,sha256=pEGiNEaigZ9EnF921UVqCPtEDD70Tcsys8i5R_N3zho,1220726
237
+ biotite/sequence/phylo/nj.cpython-312-darwin.so,sha256=qT4Mh-UaQbpuRCW3GzVAyuKkN0yyu1R0q6SYQn0_5xY,245669
238
+ biotite/structure/repair.py,sha256=5tWFQVdw2SGENO0eQexe4Dni_bDpZdT0UfA59rDgJGo,7736
239
+ biotite/structure/superimpose.py,sha256=UnXZVoUgucOnqD7PN3wdCmeS3zXZpNsXRpP9CH6oc1U,26153
240
+ biotite/structure/bonds.c,sha256=yOvABQgTID96vR0K31B1lcwM37c-2ci6CkiMROA1v3g,2559151
240
241
  biotite/structure/chains.py,sha256=OdOLduRjKyP1GZvN_QjngWUC3hTYp3cMQuvyKuNRqj8,8807
241
242
  biotite/structure/box.py,sha256=svbwAtZdH-10hPRWOACID_OM8-C329NCB__P0hZNwW8,18742
242
- biotite/structure/charges.cpython-312-darwin.so,sha256=wv9khVx5pwB5zD6Fymc1_EN4LKa6I8oiV0Llxlq7CEs,283530
243
+ biotite/structure/charges.cpython-312-darwin.so,sha256=nZkKEy6OK8ijixt2AruWjTVvQCyRdM7Sa57Rby2VevY,283530
243
244
  biotite/structure/error.py,sha256=rdNJb21D9kPTSsbF3-RQmMGegjc46jXnYEvLDIPIXJw,774
244
245
  biotite/structure/resutil.py,sha256=M7BkVAaBs3iHtFjopGQAxXbUrq_QSoeedhz7_z0ZDSg,5602
245
246
  biotite/structure/util.py,sha256=0iSSG46xH3JmW83QRYUSZpO_hR5Yn9TpAA8-jajZsi8,2258
246
- biotite/structure/celllist.c,sha256=p2rc9qNkI7scWdRxXSZQ15msTv-MnGFrJVW1X3AKLB0,1576743
247
- biotite/structure/bonds.cpython-312-darwin.so,sha256=nZcnctfz2HTJs1w-j3BgSjBZ5qwFN1vJoT7u87OHNQc,582936
248
- biotite/structure/__init__.py,sha256=DWftBI_fZjYUsHFdXhZI9TjqXtxHtkehwKq-Yh97iao,5277
247
+ biotite/structure/celllist.c,sha256=_fwQFwcR7_cFnHTPlo7s2JC3CyWI94VGTvIQSvjPGN4,1576743
248
+ biotite/structure/sequence.py,sha256=s_ugDoGWYWTfUprxOOR-fv422qFkQFkOshLQ0yXXw4Q,4152
249
+ biotite/structure/bonds.cpython-312-darwin.so,sha256=4K7R1HNnHk8YaTfZpZYvvoHWQaoWjcdnweWt-rzh6tU,599608
250
+ biotite/structure/__init__.py,sha256=x60JjCz9II2kvycGwLHvdWMOKsF3Oqdy9oPbqXMskuU,5323
249
251
  biotite/structure/mechanics.py,sha256=wQIK33d6NhJNTxqr6fSashXrlraLJC3-xcfCXM6ZPqA,2702
250
252
  biotite/structure/sse.py,sha256=8fa1-bRax5nZQKYRqr893ymn-Uv1SASg3yKx8HDi5dg,11963
251
- biotite/structure/charges.c,sha256=sKAKco1xrOUGzoFAruaU1uA7B5X9fAn-nM8E6geKHo4,1414788
253
+ biotite/structure/charges.c,sha256=unOsjzh5wPfvU3HAl70guekkpBSuhZYk1p6Y8iemjhU,1414788
252
254
  biotite/structure/density.py,sha256=TLKvLLbKRWDmH_A0mSFZeHkmbFb49lyyiL7Eeu-mLEg,4234
253
255
  biotite/structure/rdf.py,sha256=dS99s-n_N9zunYn5AQffXdEkapmUizGkugGLj9EDXBo,8059
254
- biotite/structure/celllist.cpython-312-darwin.so,sha256=BwVO4k2HHJkcknaXE1jwoM11Ba66kpzbsxW7A9XJ9-I,338555
256
+ biotite/structure/celllist.cpython-312-darwin.so,sha256=u1eZOgVPkHZIm2LyhEqLWKSZfPWchIclSoTEiupnjeI,338555
255
257
  biotite/structure/transform.py,sha256=4xlUbN1JiLqw1Tc-qFKNWj2qBJb0jXadW_LuJWHcsQc,19767
256
258
  biotite/structure/geometry.py,sha256=yWHq7u50_TqqpFpG4ARVZNqCal9JFJWnRyYADdvgEYs,25256
257
259
  biotite/structure/molecules.py,sha256=_p09r_BmyMs6QcbxrZhGuT2qwR8oQrgHV2OMQ5W7U9g,15478
258
260
  biotite/structure/filter.py,sha256=k0BpA7E980Yzyt5EE8KQTlyhs0XOud3G5jdq6mRzTwM,18716
259
261
  biotite/structure/atoms.py,sha256=dyIp5l5QuMcmqDcimNU94NsLF3zqZtbyK4dN-w1OLoc,48016
260
- biotite/structure/sasa.cpython-312-darwin.so,sha256=ikGqnpIxTJlf5r_no54tjDa9EFILXIIlhcZHHf6K6xU,283031
262
+ biotite/structure/sasa.cpython-312-darwin.so,sha256=0YKS6AnAs1K-Yn8x2zVQ-yQ6kj3IW0rkUNWY8nbIP_c,283031
261
263
  biotite/structure/pseudoknots.py,sha256=C8Id-1QyNBDuQNRCumspE_RoXuDNqJ-eFEimuzFdLIo,22380
262
264
  biotite/structure/basepairs.py,sha256=7TK4E-PXjt0GwE1JOE_AUfKmbrUY1IE9Tc6I9HLpb2s,50148
263
- biotite/structure/sasa.c,sha256=OAgll9GBgqOLBUHmnLtUJm51n-BGhRU65EO3HLWUxqs,1326808
264
- biotite/structure/integrity.py,sha256=9XndLoDGyOxB6l16to5mv4sGyUyRTb2PxD_hxxPk_ec,10061
265
+ biotite/structure/sasa.c,sha256=_aWNwnsiwPIN8O9f-PzHQj4OQbe1dha9R01s79VP0eI,1326808
266
+ biotite/structure/integrity.py,sha256=Z1g7HLB-nFtCWXbhZ2QyVML9jvnXty6YwO_FTpaWfzc,8609
265
267
  biotite/structure/compare.py,sha256=eBUGhlTSYApvoKoZ4LnMI5Ku2sB9aCeQ-V7Fcld4YiM,9502
266
268
  biotite/structure/hbond.py,sha256=zkJ1NLaOGhpwUz7WFd6ATihlJ44GGEZ9rRc9JRZ_PzE,15162
267
- biotite/structure/dotbracket.py,sha256=HEE79LzPeKNW2DXmg0VLfNCs8xmdc1Wlj8kebPep1H8,6837
269
+ biotite/structure/dotbracket.py,sha256=dzuqP1J51sq85Ng0J7IfWUXT103gIjuQsare99-jeOU,6885
268
270
  biotite/structure/residues.py,sha256=dywbV7cTrJSNBAugC012gKrx_GrMZOcs7J76ojBM2AY,22370
269
271
  biotite/structure/io/trajfile.py,sha256=9hAnnKKycYXqEyaPoy3CxYJHC_PA9d_iUSmIstJfqFU,25694
270
272
  biotite/structure/io/__init__.py,sha256=ROMPxtVLBLjvMWskQefRcSjeLlzAJP9H1lTWokp9oIc,1034
271
- biotite/structure/io/ctab.py,sha256=qXu205XQrTAgebYUlN_Zl4hOjxllGlHRRF7jzLS_PB8,4935
272
- biotite/structure/io/general.py,sha256=Q0L4OcwnBFp0DU964pH0vlVBbWYwPr6gYsORyqBIgvU,9343
273
+ biotite/structure/io/ctab.py,sha256=-a0OTessNZhNo76hPKWh5x-x6wKfGDLwGeDT52jRZHM,2183
274
+ biotite/structure/io/general.py,sha256=GOhYOAwifEqztKEGl2Iweocm27P6eOZLnRZCb4Zof4o,9066
273
275
  biotite/structure/io/dcd/__init__.py,sha256=APOO_JGG2CyUCLF4xCPmA-Ji79r4rAUaoSXajzkOEWg,387
274
276
  biotite/structure/io/dcd/file.py,sha256=JLAOdn4LkTfXqIEvbwtRHiXvRcJYEcFwr7kaIKOmC-g,2170
275
277
  biotite/structure/io/trr/__init__.py,sha256=ut-5WHHpk0n1Vs6zHhi4RnNHb3NQsLH8iVclcmkEbQE,358
276
278
  biotite/structure/io/trr/file.py,sha256=kE4pOoJJL6eKtPHcSRyirTK4Tsrv_mMJOhTY8gxidMM,1302
277
- biotite/structure/io/pdbx/encoding.cpython-312-darwin.so,sha256=s9sDjvffJGB-LVx9kC2ta88ix0MkEdBMvw05WHSsNvQ,1141179
279
+ biotite/structure/io/pdbx/encoding.cpython-312-darwin.so,sha256=Oiw4SDjV61uVEsQbyspNSRy7wF2BPVKNBL4Y7T1UteA,1141179
278
280
  biotite/structure/io/pdbx/legacy.py,sha256=01mS2bA5_GptHDpe_F7_6IyueQ8_tlgB_X_m9dRa694,8842
279
- biotite/structure/io/pdbx/error.py,sha256=uY2i4nscyB2_QwbUv_-T8i9-3xrxogFUQf2B4U6C1wo,380
280
- biotite/structure/io/pdbx/bcif.py,sha256=s5oQuDPHjayUJdu1vnVMJaFlBoWZQRkia3DKMrik0oo,20416
281
- biotite/structure/io/pdbx/convert.py,sha256=jx0PXMReJ0DzRGFuE3-SrgmKgcQQmX6OBzpRdPyBAyI,54801
282
- biotite/structure/io/pdbx/__init__.py,sha256=dVWVJMjgOljsjYcoXtpyIcWnCX4qd4cxoZArK8h64DU,735
283
- biotite/structure/io/pdbx/cif.py,sha256=29QXV5gMJSiI1-pJOY7QINbdNgDMYknW9PJ6GVRUdtM,32248
284
- biotite/structure/io/pdbx/component.py,sha256=jBFoQ9X6Sj-rSi1wBud2JebjlcsUr-KmqSQpfkJ28xQ,8080
285
- biotite/structure/io/pdbx/encoding.c,sha256=5aMg_2VMjcM0cwZEm1TH9ZGIwN5EoY6ccnx7YemUg80,4735611
281
+ biotite/structure/io/pdbx/bcif.py,sha256=u4F5FxpGIA0jR1gaG_SRGJNlLjHSo-xzueBcHfE_ukE,20379
282
+ biotite/structure/io/pdbx/convert.py,sha256=jrBqyx5vEnZLr81MXeZxjHrubmGzph3KNKYQm6c2Eyc,59757
283
+ biotite/structure/io/pdbx/__init__.py,sha256=2rl6Fn2aPcu8-2QtgIVzjCOPVdvCWfqZh3LJr43TUP8,714
284
+ biotite/structure/io/pdbx/cif.py,sha256=OuL9csoC1BsyMutILRnPL433LPvNxcTwnJcv-RzLpao,32437
285
+ biotite/structure/io/pdbx/component.py,sha256=vS_aicTCme52-nqfjJPz4ZhKhbBZYHU7kOVLUOU7ypA,8143
286
+ biotite/structure/io/pdbx/encoding.c,sha256=v7KkysQ7PY9SwYXZxDa_iR2hhFxloiU3xh0hAix2yt4,4735611
286
287
  biotite/structure/io/tng/__init__.py,sha256=7JZqpfMSSlQItvolf_JGn2PRrAh1P_1AX1C18Oo5uww,356
287
288
  biotite/structure/io/tng/file.py,sha256=ulIW3m1wfSARQoNQwhE2TcLnDyWf7U3Q6_pN4tgSb9I,1302
288
289
  biotite/structure/io/npz/__init__.py,sha256=WBUmxbb3qaFjLdAQwzYhVI_vh8w7gMZRlcpNZBYBc0s,736
@@ -295,41 +296,44 @@ biotite/structure/io/pdbqt/file.py,sha256=mSeaAXfgYH0SDKTiIH-TvKgMbJeWkoUbqngE7R
295
296
  biotite/structure/io/netcdf/__init__.py,sha256=Vzr56ymoVeSlXqEF-nhPJFPBjxSFWuyD9uy8QpzhFyU,349
296
297
  biotite/structure/io/netcdf/file.py,sha256=AW2TX7qubiDqI27Q9zknC4zE5mrZetjk8U6QNhqUnpg,2156
297
298
  biotite/structure/io/gro/__init__.py,sha256=lY39nljfVlWbHsR4RKAM3rRJzZdQliRevVzZM1MT-eY,407
298
- biotite/structure/io/gro/file.py,sha256=TiPUGb1_kMLGtkKO_7xXYmZ6v7KYcLzgyDlk6OkLAl4,12948
299
- biotite/structure/io/mol/convert.py,sha256=BMMq4W2765XwglI0RxDSDUbpk_fuQNPmpsBbGWGaNMQ,1305
300
- biotite/structure/io/mol/__init__.py,sha256=DT2L1kMbZeUKt6OgWOaI9pn1h5sP3qkXcdRM-qMdRXY,541
301
- biotite/structure/io/mol/file.py,sha256=ljV4rpbUv7o9lUvWxT06HmNs9wbfT4a-QrAWYzDDF-Q,7388
302
- biotite/structure/io/pdb/hybrid36.cpython-312-darwin.so,sha256=Flq9Ei--VWf5-34PXT9cLT0gtnp1s3wCzEcQ2jeeYF4,211579
299
+ biotite/structure/io/gro/file.py,sha256=AEmYhsl1ieO1OJ1sg4pSCDt2j9Iguurnhn-aFCqAFCM,12800
300
+ biotite/structure/io/mol/header.py,sha256=l-1vqEEnxgJ6KhWFfkf3xATf-SETOERB-apS_npFnwg,3381
301
+ biotite/structure/io/mol/convert.py,sha256=vPS3ZzbVX9qpWj4f5lz0_XtZ_GW6WkBJMfcqCbC8eYM,3781
302
+ biotite/structure/io/mol/__init__.py,sha256=fuqvVcydfrxekEsU7qAQ2Zb9sYX3vfQ1uygG20wJNZg,581
303
+ biotite/structure/io/mol/ctab.py,sha256=retJO8KrIgpg9FxjvrRnCeI6BwqYo43Duh2Kfv_B2Ik,13532
304
+ biotite/structure/io/mol/mol.py,sha256=_55esbURwK1sNWkSopDR6WOpOOPdGXwaDW74_-pWrgg,6293
305
+ biotite/structure/io/mol/sdf.py,sha256=IsHlF2JADsu_18tdhRlaXxYdJUE0TMgceTG-jGv-QuE,32006
306
+ biotite/structure/io/pdb/hybrid36.cpython-312-darwin.so,sha256=PuYKKE1nCy09uX8DYGZUH1_9I8NqmX0JUOVADQiZIK4,211579
303
307
  biotite/structure/io/pdb/hybrid36.c,sha256=QnVrzSl-4F2C33KonKXRql1jPMhbywHQVUoMwwCwgfM,1110875
304
308
  biotite/structure/io/pdb/convert.py,sha256=jysm2PrrfyzYy3ZmkIiMuOEoaSdID5qDkJ7LHI3WavA,10659
305
309
  biotite/structure/io/pdb/__init__.py,sha256=2qtLwVQu10AZhk-DUAqcIbvofyIC8BKGh4Gk9b_Ha70,732
306
- biotite/structure/io/pdb/file.py,sha256=7lbstiopNSpu-lyDHPN7MDtxpBRX014Ag5pIHoOuhc4,46016
307
- biotite/structure/io/mmtf/convertarray.cpython-312-darwin.so,sha256=nSTKw1hLxkkF62fDp1pD_Njke4PgkbmQdaiBiJ2mgMA,194767
308
- biotite/structure/io/mmtf/decode.cpython-312-darwin.so,sha256=WTuysF1uSWtslYRGI56PvbY-Fp4Na_Sopv9wTNY_88o,282281
309
- biotite/structure/io/mmtf/decode.c,sha256=1ITtB6cYQ-p0qerRBkmBMXppZoCtIGJsIRoMNRH2gdQ,1384063
310
+ biotite/structure/io/pdb/file.py,sha256=9dhv1uEApagyZsBKC1_yr0ARy8hfEnW5eJMpHX78-YM,48003
311
+ biotite/structure/io/mmtf/convertarray.cpython-312-darwin.so,sha256=zq7SYKrbs1mT54y3Iswb8JE3QxsOCUpIkBm4Mvq1PHo,194767
312
+ biotite/structure/io/mmtf/decode.cpython-312-darwin.so,sha256=ik5S0OjERoJqSg9ul-kkhisAAORO0aDHoHxYNsagG14,282281
313
+ biotite/structure/io/mmtf/decode.c,sha256=BDGuw1WCM34muaY1E_dF2ViMVLZ4dYRuq6txhMO4Wec,1384063
310
314
  biotite/structure/io/mmtf/__init__.py,sha256=5kmc5agVc7eCUhtA0DCKIj7eR8qlvaqIIaJXUHFnc6k,662
311
- biotite/structure/io/mmtf/encode.c,sha256=Oqeu0-D2M-xlbJ3d7VqW9skfTQ9Gz-bbyvcgkW_21s8,1331887
312
- biotite/structure/io/mmtf/convertarray.c,sha256=RUdG6jqt50tHpihYRdH_RGGfe9e3gWQ3OiGof4LUq7k,674219
313
- biotite/structure/io/mmtf/encode.cpython-312-darwin.so,sha256=V9m--E6G1sXCmDAFc6uR_P87IOxz9qiANv6CBEy5p3s,262121
315
+ biotite/structure/io/mmtf/encode.c,sha256=nXQ1y_lAyCNYDsYQm5ixm_u2ay5xlz121ZhFOvdbTQs,1331887
316
+ biotite/structure/io/mmtf/convertarray.c,sha256=0dg8S6kjBUBn_nO0JUPHqQ3PBNCZjdw-QaaY-LlvaDE,674219
317
+ biotite/structure/io/mmtf/encode.cpython-312-darwin.so,sha256=zO9aUr-iLE3eHIJ4EX8fSJm840qnCMXo_gffIFsFzXM,262121
314
318
  biotite/structure/io/mmtf/file.py,sha256=mMNUCXx6cKptqqcfteE_2i-e_PPwDAyVFLebZnvoQS4,6946
315
- biotite/structure/io/mmtf/convertfile.cpython-312-darwin.so,sha256=g9jbDlGwtDpggGuIj98EcFfkHxt6fv4lll-jLPXsVNE,355342
319
+ biotite/structure/io/mmtf/convertfile.cpython-312-darwin.so,sha256=xSWLbNil5PvldgSxcRGsD4O6VlNkMeGqDtaHymgO844,355342
316
320
  biotite/structure/io/mmtf/assembly.py,sha256=HYVy2Knir1TqWT_NfvrmUmR2UX8eFNzVmQImSLZP-7w,8184
317
- biotite/structure/io/mmtf/convertfile.c,sha256=7ZZlOPDjwx_9mKp0IFAd4lllF2Ut02bgBmflEuT9mXE,1553363
318
- biotite/structure/info/misc.py,sha256=MLYXpMlZRig9-gk-8fy5k10H7T0stpKnQ3h9uDMxNMA,1841
321
+ biotite/structure/io/mmtf/convertfile.c,sha256=u9-JtGA7telnuGEAp58NcY2zQOy3eYX_PXmruTJQj_k,1553363
322
+ biotite/structure/info/misc.py,sha256=bmG6nycH8s49lAxEwMVnNLCIz95VMCR1EIDQeVyWUyo,3490
319
323
  biotite/structure/info/atom_masses.json,sha256=WME4ezDPy-HrEIhxkOGxcmIMdgxf1x7e_xwBkFRdTsY,2383
320
324
  biotite/structure/info/__init__.py,sha256=k57tfM03apKfR3UlJMoDXZHS6jilhkeni1DoQa_nWLs,702
321
325
  biotite/structure/info/groups.py,sha256=RTJvSclZGxQkcsOH6ML43QWCBkeUQKE4eNSge8MHgPE,2043
322
326
  biotite/structure/info/radii.py,sha256=GlTPOCvtqGy7PQJlTOZA57PXg7xPLwKYEy0wcrCmiEc,5648
323
327
  biotite/structure/info/standardize.py,sha256=AaYn7mx6Y6NylkeOg1kIpyNoI-KrWbGSXXu_GEcSAZw,7772
324
- biotite/structure/info/bonds.py,sha256=h32B-0-4zEs9e_ZrGyIXP_Rp4IXf6u_Cm0k-DgbC5pI,4644
328
+ biotite/structure/info/bonds.py,sha256=YDcRf480_M_Sl7j3uoZ7aJZbpfAg4n6tyVoD3ijFtNk,4651
325
329
  biotite/structure/info/masses.py,sha256=dnZbg4k_89SuTwFUulyTKAL6Mnk4POPMIVhJLl5xswA,4489
326
- biotite/structure/info/atoms.py,sha256=3a_Cp7sRKwRq6rzl1uvX9Ak1fzTzLdZdJdx4zXx_1JM,2427
330
+ biotite/structure/info/atoms.py,sha256=qPCAgGF1Rd6e7mIzyBmXF1zMZy6pgX8E3wDeDvC1asU,2568
327
331
  biotite/structure/info/ccd.py,sha256=26BnKJEGH6Bhmvkll_ev6HSCIi0hNx_cs_N9hqNXP-4,2754
328
- biotite/structure/info/ccd/components.bcif,sha256=2exbF1n0jReJ3JTI9YYPzjxCtrIu3Z6myll-w3JOQRU,35086693
329
- biotite/structure/info/ccd/amino_acids.txt,sha256=AC0v3vCBdzSzC0nQZ_jCXGviuBi_9PHUGqLe_regyMY,6591
332
+ biotite/structure/info/ccd/components.bcif,sha256=xgvErxils9GNg5s0sGI33B7w4lWeUBZRksPer3japnE,35649254
333
+ biotite/structure/info/ccd/amino_acids.txt,sha256=RUyolncqbsplkY2hlajjOSciigyZEYL1GCx_f63jXx4,6669
330
334
  biotite/structure/info/ccd/README.rst,sha256=sfFRGesjpATIp5S8kiEV7cr-Jb51fWLGT4KypmzsoPM,342
331
- biotite/structure/info/ccd/carbohydrates.txt,sha256=2rAtgJ4vu_SPY_3dZOZkioBXs4lDPPY8FKfINPStFmk,4532
332
- biotite/structure/info/ccd/nucleotides.txt,sha256=x02Y7eWP4JiR-Fw5qXltSUd-UbTQxNWuQUjr67f46RM,3132
335
+ biotite/structure/info/ccd/carbohydrates.txt,sha256=bh5Vc84tETB-FKUm6H1brBN6zM5a2zzzwuWyb0MXaLA,4544
336
+ biotite/structure/info/ccd/nucleotides.txt,sha256=Q7Zjz45BAO6c2QDAgvYdKtWAqmjQxy2NQ6r-bsZRqv4,3136
333
337
  biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
334
338
  biotite/structure/graphics/rna.py,sha256=bhIHoB_9sFuZPrHQ8qQnToRiTCfgQ7JLVNIdsQVvkw8,11888
335
339
  biotite/structure/graphics/atoms.py,sha256=nMhbmnjytxEDkxTTm2wHM2dObSw3izjvRbqssCW876E,8171
@@ -1,14 +0,0 @@
1
- # This source code is part of the Biotite package and is distributed
2
- # under the 3-Clause BSD License. Please see 'LICENSE.rst' for further
3
- # information.
4
-
5
- __name__ = "biotite.structure.io.pdbx"
6
- __author__ = "Patrick Kunzmann"
7
- __all__ = ["SerializationError", "DeserializationError"]
8
-
9
-
10
- class SerializationError(Exception):
11
- pass
12
-
13
- class DeserializationError(Exception):
14
- pass