biotite 0.39.0__cp310-cp310-win_amd64.whl → 0.41.0__cp310-cp310-win_amd64.whl

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Files changed (121) hide show
  1. biotite/__init__.py +3 -3
  2. biotite/application/dssp/app.py +18 -18
  3. biotite/database/pubchem/download.py +23 -23
  4. biotite/database/pubchem/query.py +7 -7
  5. biotite/database/rcsb/download.py +19 -14
  6. biotite/file.py +17 -9
  7. biotite/sequence/align/banded.c +258 -237
  8. biotite/sequence/align/banded.cp310-win_amd64.pyd +0 -0
  9. biotite/sequence/align/cigar.py +60 -15
  10. biotite/sequence/align/kmeralphabet.c +243 -222
  11. biotite/sequence/align/kmeralphabet.cp310-win_amd64.pyd +0 -0
  12. biotite/sequence/align/kmersimilarity.c +215 -196
  13. biotite/sequence/align/kmersimilarity.cp310-win_amd64.pyd +0 -0
  14. biotite/sequence/align/kmertable.cp310-win_amd64.pyd +0 -0
  15. biotite/sequence/align/kmertable.cpp +233 -205
  16. biotite/sequence/align/localgapped.c +258 -237
  17. biotite/sequence/align/localgapped.cp310-win_amd64.pyd +0 -0
  18. biotite/sequence/align/localungapped.c +235 -214
  19. biotite/sequence/align/localungapped.cp310-win_amd64.pyd +0 -0
  20. biotite/sequence/align/multiple.c +255 -234
  21. biotite/sequence/align/multiple.cp310-win_amd64.pyd +0 -0
  22. biotite/sequence/align/pairwise.c +274 -253
  23. biotite/sequence/align/pairwise.cp310-win_amd64.pyd +0 -0
  24. biotite/sequence/align/permutation.c +215 -196
  25. biotite/sequence/align/permutation.cp310-win_amd64.pyd +0 -0
  26. biotite/sequence/align/selector.c +217 -197
  27. biotite/sequence/align/selector.cp310-win_amd64.pyd +0 -0
  28. biotite/sequence/align/tracetable.c +215 -195
  29. biotite/sequence/align/tracetable.cp310-win_amd64.pyd +0 -0
  30. biotite/sequence/annotation.py +2 -2
  31. biotite/sequence/codec.c +235 -214
  32. biotite/sequence/codec.cp310-win_amd64.pyd +0 -0
  33. biotite/sequence/io/fasta/convert.py +27 -24
  34. biotite/sequence/phylo/nj.c +215 -196
  35. biotite/sequence/phylo/nj.cp310-win_amd64.pyd +0 -0
  36. biotite/sequence/phylo/tree.c +227 -202
  37. biotite/sequence/phylo/tree.cp310-win_amd64.pyd +0 -0
  38. biotite/sequence/phylo/upgma.c +215 -196
  39. biotite/sequence/phylo/upgma.cp310-win_amd64.pyd +0 -0
  40. biotite/structure/__init__.py +2 -0
  41. biotite/structure/basepairs.py +7 -12
  42. biotite/structure/bonds.c +1437 -1279
  43. biotite/structure/bonds.cp310-win_amd64.pyd +0 -0
  44. biotite/structure/celllist.c +217 -197
  45. biotite/structure/celllist.cp310-win_amd64.pyd +0 -0
  46. biotite/structure/charges.c +1052 -1101
  47. biotite/structure/charges.cp310-win_amd64.pyd +0 -0
  48. biotite/structure/dotbracket.py +2 -0
  49. biotite/structure/filter.py +30 -37
  50. biotite/structure/info/__init__.py +5 -8
  51. biotite/structure/info/atoms.py +31 -68
  52. biotite/structure/info/bonds.py +47 -101
  53. biotite/structure/info/ccd/README.rst +8 -0
  54. biotite/structure/info/ccd/amino_acids.txt +1663 -0
  55. biotite/structure/info/ccd/carbohydrates.txt +1135 -0
  56. biotite/structure/info/ccd/components.bcif +0 -0
  57. biotite/structure/info/ccd/nucleotides.txt +798 -0
  58. biotite/structure/info/ccd.py +95 -0
  59. biotite/structure/info/groups.py +90 -0
  60. biotite/structure/info/masses.py +21 -20
  61. biotite/structure/info/misc.py +78 -25
  62. biotite/structure/info/standardize.py +17 -12
  63. biotite/structure/integrity.py +19 -70
  64. biotite/structure/io/__init__.py +2 -4
  65. biotite/structure/io/ctab.py +12 -106
  66. biotite/structure/io/general.py +167 -181
  67. biotite/structure/io/gro/file.py +16 -16
  68. biotite/structure/io/mmtf/__init__.py +3 -0
  69. biotite/structure/io/mmtf/convertarray.c +219 -198
  70. biotite/structure/io/mmtf/convertarray.cp310-win_amd64.pyd +0 -0
  71. biotite/structure/io/mmtf/convertfile.c +217 -197
  72. biotite/structure/io/mmtf/convertfile.cp310-win_amd64.pyd +0 -0
  73. biotite/structure/io/mmtf/decode.c +225 -204
  74. biotite/structure/io/mmtf/decode.cp310-win_amd64.pyd +0 -0
  75. biotite/structure/io/mmtf/encode.c +215 -196
  76. biotite/structure/io/mmtf/encode.cp310-win_amd64.pyd +0 -0
  77. biotite/structure/io/mmtf/file.py +34 -26
  78. biotite/structure/io/mol/__init__.py +4 -2
  79. biotite/structure/io/mol/convert.py +71 -7
  80. biotite/structure/io/mol/ctab.py +414 -0
  81. biotite/structure/io/mol/header.py +116 -0
  82. biotite/structure/io/mol/{file.py → mol.py} +69 -82
  83. biotite/structure/io/mol/sdf.py +909 -0
  84. biotite/structure/io/npz/__init__.py +3 -0
  85. biotite/structure/io/npz/file.py +21 -18
  86. biotite/structure/io/pdb/__init__.py +3 -3
  87. biotite/structure/io/pdb/file.py +89 -34
  88. biotite/structure/io/pdb/hybrid36.c +63 -43
  89. biotite/structure/io/pdb/hybrid36.cp310-win_amd64.pyd +0 -0
  90. biotite/structure/io/pdbqt/file.py +32 -32
  91. biotite/structure/io/pdbx/__init__.py +12 -6
  92. biotite/structure/io/pdbx/bcif.py +648 -0
  93. biotite/structure/io/pdbx/cif.py +1032 -0
  94. biotite/structure/io/pdbx/component.py +246 -0
  95. biotite/structure/io/pdbx/convert.py +858 -386
  96. biotite/structure/io/pdbx/encoding.c +112813 -0
  97. biotite/structure/io/pdbx/encoding.cp310-win_amd64.pyd +0 -0
  98. biotite/structure/io/pdbx/legacy.py +267 -0
  99. biotite/structure/molecules.py +151 -151
  100. biotite/structure/repair.py +253 -0
  101. biotite/structure/sasa.c +215 -196
  102. biotite/structure/sasa.cp310-win_amd64.pyd +0 -0
  103. biotite/structure/sequence.py +112 -0
  104. biotite/structure/superimpose.py +618 -116
  105. {biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/METADATA +3 -3
  106. {biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/RECORD +109 -103
  107. {biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/WHEEL +1 -1
  108. biotite/structure/info/amino_acids.json +0 -1556
  109. biotite/structure/info/amino_acids.py +0 -42
  110. biotite/structure/info/carbohydrates.json +0 -1122
  111. biotite/structure/info/carbohydrates.py +0 -39
  112. biotite/structure/info/intra_bonds.msgpack +0 -0
  113. biotite/structure/info/link_types.msgpack +0 -1
  114. biotite/structure/info/nucleotides.json +0 -772
  115. biotite/structure/info/nucleotides.py +0 -39
  116. biotite/structure/info/residue_masses.msgpack +0 -0
  117. biotite/structure/info/residue_names.msgpack +0 -3
  118. biotite/structure/info/residues.msgpack +0 -0
  119. biotite/structure/io/pdbx/file.py +0 -652
  120. {biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/LICENSE.rst +0 -0
  121. {biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/top_level.txt +0 -0
@@ -1,4 +1,4 @@
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- /* Generated by Cython 3.0.7 */
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+ /* Generated by Cython 3.0.10 */
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  /* BEGIN: Cython Metadata
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  {
@@ -37,10 +37,10 @@ END: Cython Metadata */
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  #else
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  #define __PYX_EXTRA_ABI_MODULE_NAME ""
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  #endif
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- #define CYTHON_ABI "3_0_7" __PYX_EXTRA_ABI_MODULE_NAME
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+ #define CYTHON_ABI "3_0_10" __PYX_EXTRA_ABI_MODULE_NAME
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  #define __PYX_ABI_MODULE_NAME "_cython_" CYTHON_ABI
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  #define __PYX_TYPE_MODULE_PREFIX __PYX_ABI_MODULE_NAME "."
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- #define CYTHON_HEX_VERSION 0x030007F0
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+ #define CYTHON_HEX_VERSION 0x03000AF0
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  #define CYTHON_FUTURE_DIVISION 1
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  #include <stddef.h>
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  #ifndef offsetof
@@ -132,6 +132,8 @@ END: Cython Metadata */
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  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
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  #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
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  #endif
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+ #undef CYTHON_USE_FREELISTS
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+ #define CYTHON_USE_FREELISTS 0
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  #elif defined(PYPY_VERSION)
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  #define CYTHON_COMPILING_IN_PYPY 1
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  #define CYTHON_COMPILING_IN_CPYTHON 0
@@ -193,6 +195,8 @@ END: Cython Metadata */
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  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
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  #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
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  #endif
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+ #undef CYTHON_USE_FREELISTS
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+ #define CYTHON_USE_FREELISTS 0
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  #elif defined(CYTHON_LIMITED_API)
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  #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
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  #define CYTHON_UPDATE_DESCRIPTOR_DOC 0
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  #endif
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+ #undef CYTHON_USE_FREELISTS
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+ #define CYTHON_USE_FREELISTS 0
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  #elif defined(Py_GIL_DISABLED) || defined(Py_NOGIL)
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  #define CYTHON_COMPILING_IN_PYPY 0
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  #define CYTHON_COMPILING_IN_CPYTHON 0
@@ -263,11 +269,17 @@ END: Cython Metadata */
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  #ifndef CYTHON_USE_TYPE_SLOTS
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  #endif
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+ #ifndef CYTHON_USE_TYPE_SPECS
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+ #define CYTHON_USE_TYPE_SPECS 0
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+ #endif
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  #define CYTHON_USE_PYTYPE_LOOKUP 0
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  #ifndef CYTHON_USE_ASYNC_SLOTS
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  #define CYTHON_USE_ASYNC_SLOTS 1
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  #endif
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+ #ifndef CYTHON_USE_PYLONG_INTERNALS
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+ #define CYTHON_USE_PYLONG_INTERNALS 0
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+ #endif
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  #undef CYTHON_USE_PYLIST_INTERNALS
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  #define CYTHON_USE_PYLIST_INTERNALS 0
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  #ifndef CYTHON_USE_UNICODE_INTERNALS
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  #endif
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- #define CYTHON_USE_PYLONG_INTERNALS 0
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  #endif
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  #endif
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  #undef CYTHON_FAST_THREAD_STATE
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  #define CYTHON_FAST_THREAD_STATE 0
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+ #undef CYTHON_FAST_GIL
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+ #define CYTHON_FAST_GIL 0
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+ #ifndef CYTHON_METH_FASTCALL
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+ #define CYTHON_METH_FASTCALL 1
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+ #endif
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  #define CYTHON_FAST_PYCALL 0
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+ #ifndef CYTHON_PEP487_INIT_SUBCLASS
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+ #define CYTHON_PEP487_INIT_SUBCLASS 1
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+ #endif
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  #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
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  #define CYTHON_PEP489_MULTI_PHASE_INIT 1
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+ #ifndef CYTHON_USE_MODULE_STATE
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+ #define CYTHON_USE_MODULE_STATE 0
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+ #endif
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  #endif
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  #define CYTHON_USE_DICT_VERSIONS 0
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  #define CYTHON_USE_EXC_INFO_STACK 0
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+ #ifndef CYTHON_UPDATE_DESCRIPTOR_DOC
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+ #define CYTHON_UPDATE_DESCRIPTOR_DOC 1
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+ #endif
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+ #ifndef CYTHON_USE_FREELISTS
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+ #define CYTHON_USE_FREELISTS 0
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+ #endif
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@@ -390,6 +417,9 @@ END: Cython Metadata */
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+ #define CYTHON_USE_FREELISTS 1
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+ #endif
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@@ -582,14 +612,14 @@ END: Cython Metadata */
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@@ -647,7 +677,7 @@ END: Cython Metadata */
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+ # define __Pyx_PyCFunctionFast PyCFunctionFast
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+ # define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
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@@ -1288,24 +1323,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
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@@ -1645,7 +1663,7 @@ typedef struct {
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@@ -1654,7 +1672,7 @@ typedef struct {
1654
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1657
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  *
1659
1677
  * ctypedef npy_int8 int8_t
1660
1678
  * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
@@ -1663,7 +1681,7 @@ typedef npy_int8 __pyx_t_5numpy_int8_t;
1663
1681
  */
1664
1682
  typedef npy_int16 __pyx_t_5numpy_int16_t;
1665
1683
 
1666
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":734
1684
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":734
1667
1685
  * ctypedef npy_int8 int8_t
1668
1686
  * ctypedef npy_int16 int16_t
1669
1687
  * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
@@ -1672,7 +1690,7 @@ typedef npy_int16 __pyx_t_5numpy_int16_t;
1672
1690
  */
1673
1691
  typedef npy_int32 __pyx_t_5numpy_int32_t;
1674
1692
 
1675
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":735
1693
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":735
1676
1694
  * ctypedef npy_int16 int16_t
1677
1695
  * ctypedef npy_int32 int32_t
1678
1696
  * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
@@ -1681,7 +1699,7 @@ typedef npy_int32 __pyx_t_5numpy_int32_t;
1681
1699
  */
1682
1700
  typedef npy_int64 __pyx_t_5numpy_int64_t;
1683
1701
 
1684
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":739
1702
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":739
1685
1703
  * #ctypedef npy_int128 int128_t
1686
1704
  *
1687
1705
  * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
@@ -1690,7 +1708,7 @@ typedef npy_int64 __pyx_t_5numpy_int64_t;
1690
1708
  */
1691
1709
  typedef npy_uint8 __pyx_t_5numpy_uint8_t;
1692
1710
 
1693
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":740
1711
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":740
1694
1712
  *
1695
1713
  * ctypedef npy_uint8 uint8_t
1696
1714
  * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
@@ -1699,7 +1717,7 @@ typedef npy_uint8 __pyx_t_5numpy_uint8_t;
1699
1717
  */
1700
1718
  typedef npy_uint16 __pyx_t_5numpy_uint16_t;
1701
1719
 
1702
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":741
1720
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":741
1703
1721
  * ctypedef npy_uint8 uint8_t
1704
1722
  * ctypedef npy_uint16 uint16_t
1705
1723
  * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
@@ -1708,7 +1726,7 @@ typedef npy_uint16 __pyx_t_5numpy_uint16_t;
1708
1726
  */
1709
1727
  typedef npy_uint32 __pyx_t_5numpy_uint32_t;
1710
1728
 
1711
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":742
1729
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":742
1712
1730
  * ctypedef npy_uint16 uint16_t
1713
1731
  * ctypedef npy_uint32 uint32_t
1714
1732
  * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
@@ -1717,7 +1735,7 @@ typedef npy_uint32 __pyx_t_5numpy_uint32_t;
1717
1735
  */
1718
1736
  typedef npy_uint64 __pyx_t_5numpy_uint64_t;
1719
1737
 
1720
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":746
1738
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":746
1721
1739
  * #ctypedef npy_uint128 uint128_t
1722
1740
  *
1723
1741
  * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
@@ -1726,7 +1744,7 @@ typedef npy_uint64 __pyx_t_5numpy_uint64_t;
1726
1744
  */
1727
1745
  typedef npy_float32 __pyx_t_5numpy_float32_t;
1728
1746
 
1729
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":747
1747
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":747
1730
1748
  *
1731
1749
  * ctypedef npy_float32 float32_t
1732
1750
  * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
@@ -1735,7 +1753,7 @@ typedef npy_float32 __pyx_t_5numpy_float32_t;
1735
1753
  */
1736
1754
  typedef npy_float64 __pyx_t_5numpy_float64_t;
1737
1755
 
1738
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":756
1756
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":756
1739
1757
  * # The int types are mapped a bit surprising --
1740
1758
  * # numpy.int corresponds to 'l' and numpy.long to 'q'
1741
1759
  * ctypedef npy_long int_t # <<<<<<<<<<<<<<
@@ -1744,7 +1762,7 @@ typedef npy_float64 __pyx_t_5numpy_float64_t;
1744
1762
  */
1745
1763
  typedef npy_long __pyx_t_5numpy_int_t;
1746
1764
 
1747
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":757
1765
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":757
1748
1766
  * # numpy.int corresponds to 'l' and numpy.long to 'q'
1749
1767
  * ctypedef npy_long int_t
1750
1768
  * ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
@@ -1753,7 +1771,7 @@ typedef npy_long __pyx_t_5numpy_int_t;
1753
1771
  */
1754
1772
  typedef npy_longlong __pyx_t_5numpy_long_t;
1755
1773
 
1756
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":758
1774
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":758
1757
1775
  * ctypedef npy_long int_t
1758
1776
  * ctypedef npy_longlong long_t
1759
1777
  * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
@@ -1762,7 +1780,7 @@ typedef npy_longlong __pyx_t_5numpy_long_t;
1762
1780
  */
1763
1781
  typedef npy_longlong __pyx_t_5numpy_longlong_t;
1764
1782
 
1765
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":760
1783
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":760
1766
1784
  * ctypedef npy_longlong longlong_t
1767
1785
  *
1768
1786
  * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
@@ -1771,7 +1789,7 @@ typedef npy_longlong __pyx_t_5numpy_longlong_t;
1771
1789
  */
1772
1790
  typedef npy_ulong __pyx_t_5numpy_uint_t;
1773
1791
 
1774
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":761
1792
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":761
1775
1793
  *
1776
1794
  * ctypedef npy_ulong uint_t
1777
1795
  * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
@@ -1780,7 +1798,7 @@ typedef npy_ulong __pyx_t_5numpy_uint_t;
1780
1798
  */
1781
1799
  typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
1782
1800
 
1783
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":762
1801
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":762
1784
1802
  * ctypedef npy_ulong uint_t
1785
1803
  * ctypedef npy_ulonglong ulong_t
1786
1804
  * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
@@ -1789,7 +1807,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
1789
1807
  */
1790
1808
  typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
1791
1809
 
1792
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":764
1810
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":764
1793
1811
  * ctypedef npy_ulonglong ulonglong_t
1794
1812
  *
1795
1813
  * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
@@ -1798,7 +1816,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
1798
1816
  */
1799
1817
  typedef npy_intp __pyx_t_5numpy_intp_t;
1800
1818
 
1801
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":765
1819
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":765
1802
1820
  *
1803
1821
  * ctypedef npy_intp intp_t
1804
1822
  * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
@@ -1807,7 +1825,7 @@ typedef npy_intp __pyx_t_5numpy_intp_t;
1807
1825
  */
1808
1826
  typedef npy_uintp __pyx_t_5numpy_uintp_t;
1809
1827
 
1810
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":767
1828
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":767
1811
1829
  * ctypedef npy_uintp uintp_t
1812
1830
  *
1813
1831
  * ctypedef npy_double float_t # <<<<<<<<<<<<<<
@@ -1816,7 +1834,7 @@ typedef npy_uintp __pyx_t_5numpy_uintp_t;
1816
1834
  */
1817
1835
  typedef npy_double __pyx_t_5numpy_float_t;
1818
1836
 
1819
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":768
1837
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":768
1820
1838
  *
1821
1839
  * ctypedef npy_double float_t
1822
1840
  * ctypedef npy_double double_t # <<<<<<<<<<<<<<
@@ -1825,7 +1843,7 @@ typedef npy_double __pyx_t_5numpy_float_t;
1825
1843
  */
1826
1844
  typedef npy_double __pyx_t_5numpy_double_t;
1827
1845
 
1828
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":769
1846
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":769
1829
1847
  * ctypedef npy_double float_t
1830
1848
  * ctypedef npy_double double_t
1831
1849
  * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
@@ -1920,7 +1938,7 @@ struct __pyx_MemviewEnum_obj;
1920
1938
  struct __pyx_memoryview_obj;
1921
1939
  struct __pyx_memoryviewslice_obj;
1922
1940
 
1923
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":771
1941
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":771
1924
1942
  * ctypedef npy_longdouble longdouble_t
1925
1943
  *
1926
1944
  * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
@@ -1929,7 +1947,7 @@ struct __pyx_memoryviewslice_obj;
1929
1947
  */
1930
1948
  typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
1931
1949
 
1932
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":772
1950
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":772
1933
1951
  *
1934
1952
  * ctypedef npy_cfloat cfloat_t
1935
1953
  * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
@@ -1938,7 +1956,7 @@ typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
1938
1956
  */
1939
1957
  typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
1940
1958
 
1941
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":773
1959
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":773
1942
1960
  * ctypedef npy_cfloat cfloat_t
1943
1961
  * ctypedef npy_cdouble cdouble_t
1944
1962
  * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
@@ -1947,7 +1965,7 @@ typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
1947
1965
  */
1948
1966
  typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
1949
1967
 
1950
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":775
1968
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":775
1951
1969
  * ctypedef npy_clongdouble clongdouble_t
1952
1970
  *
1953
1971
  * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
@@ -2307,8 +2325,8 @@ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int
2307
2325
  #define __Pyx_Arg_NewRef_VARARGS(arg) __Pyx_NewRef(arg)
2308
2326
  #define __Pyx_Arg_XDECREF_VARARGS(arg) Py_XDECREF(arg)
2309
2327
  #else
2310
- #define __Pyx_Arg_NewRef_VARARGS(arg) arg // no-op
2311
- #define __Pyx_Arg_XDECREF_VARARGS(arg) // no-op - arg is borrowed
2328
+ #define __Pyx_Arg_NewRef_VARARGS(arg) arg
2329
+ #define __Pyx_Arg_XDECREF_VARARGS(arg)
2312
2330
  #endif
2313
2331
  #define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds)
2314
2332
  #define __Pyx_KwValues_VARARGS(args, nargs) NULL
@@ -2324,8 +2342,9 @@ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int
2324
2342
  #else
2325
2343
  #define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw)
2326
2344
  #endif
2327
- #define __Pyx_Arg_NewRef_FASTCALL(arg) arg // no-op, __Pyx_Arg_FASTCALL is direct and this needs
2328
- #define __Pyx_Arg_XDECREF_FASTCALL(arg) // no-op - arg was returned from array
2345
+ #define __Pyx_Arg_NewRef_FASTCALL(arg) arg /* no-op, __Pyx_Arg_FASTCALL is direct and this needs
2346
+ to have the same reference counting */
2347
+ #define __Pyx_Arg_XDECREF_FASTCALL(arg)
2329
2348
  #else
2330
2349
  #define __Pyx_Arg_FASTCALL __Pyx_Arg_VARARGS
2331
2350
  #define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS
@@ -2961,22 +2980,22 @@ static int __Pyx_setup_reduce(PyObject* type_obj);
2961
2980
  #endif
2962
2981
 
2963
2982
  /* TypeImport.proto */
2964
- #ifndef __PYX_HAVE_RT_ImportType_proto_3_0_7
2965
- #define __PYX_HAVE_RT_ImportType_proto_3_0_7
2983
+ #ifndef __PYX_HAVE_RT_ImportType_proto_3_0_10
2984
+ #define __PYX_HAVE_RT_ImportType_proto_3_0_10
2966
2985
  #if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L
2967
2986
  #include <stdalign.h>
2968
2987
  #endif
2969
2988
  #if (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) || __cplusplus >= 201103L
2970
- #define __PYX_GET_STRUCT_ALIGNMENT_3_0_7(s) alignof(s)
2989
+ #define __PYX_GET_STRUCT_ALIGNMENT_3_0_10(s) alignof(s)
2971
2990
  #else
2972
- #define __PYX_GET_STRUCT_ALIGNMENT_3_0_7(s) sizeof(void*)
2991
+ #define __PYX_GET_STRUCT_ALIGNMENT_3_0_10(s) sizeof(void*)
2973
2992
  #endif
2974
- enum __Pyx_ImportType_CheckSize_3_0_7 {
2975
- __Pyx_ImportType_CheckSize_Error_3_0_7 = 0,
2976
- __Pyx_ImportType_CheckSize_Warn_3_0_7 = 1,
2977
- __Pyx_ImportType_CheckSize_Ignore_3_0_7 = 2
2993
+ enum __Pyx_ImportType_CheckSize_3_0_10 {
2994
+ __Pyx_ImportType_CheckSize_Error_3_0_10 = 0,
2995
+ __Pyx_ImportType_CheckSize_Warn_3_0_10 = 1,
2996
+ __Pyx_ImportType_CheckSize_Ignore_3_0_10 = 2
2978
2997
  };
2979
- static PyTypeObject *__Pyx_ImportType_3_0_7(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_7 check_size);
2998
+ static PyTypeObject *__Pyx_ImportType_3_0_10(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_10 check_size);
2980
2999
  #endif
2981
3000
 
2982
3001
  /* FetchSharedCythonModule.proto */
@@ -3069,7 +3088,7 @@ typedef struct {
3069
3088
  #endif
3070
3089
  void *defaults;
3071
3090
  int defaults_pyobjects;
3072
- size_t defaults_size; // used by FusedFunction for copying defaults
3091
+ size_t defaults_size;
3073
3092
  int flags;
3074
3093
  PyObject *defaults_tuple;
3075
3094
  PyObject *defaults_kwdict;
@@ -3415,7 +3434,7 @@ static unsigned long __Pyx_get_runtime_version(void);
3415
3434
  static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer);
3416
3435
 
3417
3436
  /* FunctionImport.proto */
3418
- static int __Pyx_ImportFunction_3_0_7(PyObject *module, const char *funcname, void (**f)(void), const char *sig);
3437
+ static int __Pyx_ImportFunction_3_0_10(PyObject *module, const char *funcname, void (**f)(void), const char *sig);
3419
3438
 
3420
3439
  /* InitStrings.proto */
3421
3440
  static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
@@ -19076,7 +19095,7 @@ static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *__
19076
19095
  return __pyx_r;
19077
19096
  }
19078
19097
 
19079
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
19098
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
19080
19099
  *
19081
19100
  * @property
19082
19101
  * cdef inline PyObject* base(self) nogil: # <<<<<<<<<<<<<<
@@ -19087,7 +19106,7 @@ static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *__
19087
19106
  static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self) {
19088
19107
  PyObject *__pyx_r;
19089
19108
 
19090
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":249
19109
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":249
19091
19110
  * """Returns a borrowed reference to the object owning the data/memory.
19092
19111
  * """
19093
19112
  * return PyArray_BASE(self) # <<<<<<<<<<<<<<
@@ -19097,7 +19116,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
19097
19116
  __pyx_r = PyArray_BASE(__pyx_v_self);
19098
19117
  goto __pyx_L0;
19099
19118
 
19100
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
19119
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":246
19101
19120
  *
19102
19121
  * @property
19103
19122
  * cdef inline PyObject* base(self) nogil: # <<<<<<<<<<<<<<
@@ -19110,7 +19129,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
19110
19129
  return __pyx_r;
19111
19130
  }
19112
19131
 
19113
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
19132
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
19114
19133
  *
19115
19134
  * @property
19116
19135
  * cdef inline dtype descr(self): # <<<<<<<<<<<<<<
@@ -19124,7 +19143,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
19124
19143
  PyArray_Descr *__pyx_t_1;
19125
19144
  __Pyx_RefNannySetupContext("descr", 1);
19126
19145
 
19127
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":255
19146
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":255
19128
19147
  * """Returns an owned reference to the dtype of the array.
19129
19148
  * """
19130
19149
  * return <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
@@ -19137,7 +19156,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
19137
19156
  __pyx_r = ((PyArray_Descr *)__pyx_t_1);
19138
19157
  goto __pyx_L0;
19139
19158
 
19140
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
19159
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":252
19141
19160
  *
19142
19161
  * @property
19143
19162
  * cdef inline dtype descr(self): # <<<<<<<<<<<<<<
@@ -19152,7 +19171,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
19152
19171
  return __pyx_r;
19153
19172
  }
19154
19173
 
19155
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":258
19174
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":258
19156
19175
  *
19157
19176
  * @property
19158
19177
  * cdef inline int ndim(self) nogil: # <<<<<<<<<<<<<<
@@ -19163,7 +19182,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
19163
19182
  static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self) {
19164
19183
  int __pyx_r;
19165
19184
 
19166
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":261
19185
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":261
19167
19186
  * """Returns the number of dimensions in the array.
19168
19187
  * """
19169
19188
  * return PyArray_NDIM(self) # <<<<<<<<<<<<<<
@@ -19173,7 +19192,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
19173
19192
  __pyx_r = PyArray_NDIM(__pyx_v_self);
19174
19193
  goto __pyx_L0;
19175
19194
 
19176
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":258
19195
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":258
19177
19196
  *
19178
19197
  * @property
19179
19198
  * cdef inline int ndim(self) nogil: # <<<<<<<<<<<<<<
@@ -19186,7 +19205,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
19186
19205
  return __pyx_r;
19187
19206
  }
19188
19207
 
19189
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":264
19208
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":264
19190
19209
  *
19191
19210
  * @property
19192
19211
  * cdef inline npy_intp *shape(self) nogil: # <<<<<<<<<<<<<<
@@ -19197,7 +19216,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
19197
19216
  static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self) {
19198
19217
  npy_intp *__pyx_r;
19199
19218
 
19200
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":269
19219
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":269
19201
19220
  * Can return NULL for 0-dimensional arrays.
19202
19221
  * """
19203
19222
  * return PyArray_DIMS(self) # <<<<<<<<<<<<<<
@@ -19207,7 +19226,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
19207
19226
  __pyx_r = PyArray_DIMS(__pyx_v_self);
19208
19227
  goto __pyx_L0;
19209
19228
 
19210
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":264
19229
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":264
19211
19230
  *
19212
19231
  * @property
19213
19232
  * cdef inline npy_intp *shape(self) nogil: # <<<<<<<<<<<<<<
@@ -19220,7 +19239,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
19220
19239
  return __pyx_r;
19221
19240
  }
19222
19241
 
19223
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":272
19242
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":272
19224
19243
  *
19225
19244
  * @property
19226
19245
  * cdef inline npy_intp *strides(self) nogil: # <<<<<<<<<<<<<<
@@ -19231,7 +19250,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
19231
19250
  static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self) {
19232
19251
  npy_intp *__pyx_r;
19233
19252
 
19234
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":276
19253
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":276
19235
19254
  * The number of elements matches the number of dimensions of the array (ndim).
19236
19255
  * """
19237
19256
  * return PyArray_STRIDES(self) # <<<<<<<<<<<<<<
@@ -19241,7 +19260,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
19241
19260
  __pyx_r = PyArray_STRIDES(__pyx_v_self);
19242
19261
  goto __pyx_L0;
19243
19262
 
19244
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":272
19263
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":272
19245
19264
  *
19246
19265
  * @property
19247
19266
  * cdef inline npy_intp *strides(self) nogil: # <<<<<<<<<<<<<<
@@ -19254,7 +19273,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
19254
19273
  return __pyx_r;
19255
19274
  }
19256
19275
 
19257
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
19276
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
19258
19277
  *
19259
19278
  * @property
19260
19279
  * cdef inline npy_intp size(self) nogil: # <<<<<<<<<<<<<<
@@ -19265,7 +19284,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
19265
19284
  static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self) {
19266
19285
  npy_intp __pyx_r;
19267
19286
 
19268
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":282
19287
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":282
19269
19288
  * """Returns the total size (in number of elements) of the array.
19270
19289
  * """
19271
19290
  * return PyArray_SIZE(self) # <<<<<<<<<<<<<<
@@ -19275,7 +19294,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
19275
19294
  __pyx_r = PyArray_SIZE(__pyx_v_self);
19276
19295
  goto __pyx_L0;
19277
19296
 
19278
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
19297
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":279
19279
19298
  *
19280
19299
  * @property
19281
19300
  * cdef inline npy_intp size(self) nogil: # <<<<<<<<<<<<<<
@@ -19288,7 +19307,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
19288
19307
  return __pyx_r;
19289
19308
  }
19290
19309
 
19291
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":285
19310
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":285
19292
19311
  *
19293
19312
  * @property
19294
19313
  * cdef inline char* data(self) nogil: # <<<<<<<<<<<<<<
@@ -19299,7 +19318,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
19299
19318
  static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self) {
19300
19319
  char *__pyx_r;
19301
19320
 
19302
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":291
19321
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":291
19303
19322
  * of `PyArray_DATA()` instead, which returns a 'void*'.
19304
19323
  * """
19305
19324
  * return PyArray_BYTES(self) # <<<<<<<<<<<<<<
@@ -19309,7 +19328,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
19309
19328
  __pyx_r = PyArray_BYTES(__pyx_v_self);
19310
19329
  goto __pyx_L0;
19311
19330
 
19312
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":285
19331
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":285
19313
19332
  *
19314
19333
  * @property
19315
19334
  * cdef inline char* data(self) nogil: # <<<<<<<<<<<<<<
@@ -19322,7 +19341,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
19322
19341
  return __pyx_r;
19323
19342
  }
19324
19343
 
19325
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":777
19344
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":777
19326
19345
  * ctypedef npy_cdouble complex_t
19327
19346
  *
19328
19347
  * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
@@ -19339,7 +19358,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
19339
19358
  int __pyx_clineno = 0;
19340
19359
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 1);
19341
19360
 
19342
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":778
19361
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":778
19343
19362
  *
19344
19363
  * cdef inline object PyArray_MultiIterNew1(a):
19345
19364
  * return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
@@ -19353,7 +19372,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
19353
19372
  __pyx_t_1 = 0;
19354
19373
  goto __pyx_L0;
19355
19374
 
19356
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":777
19375
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":777
19357
19376
  * ctypedef npy_cdouble complex_t
19358
19377
  *
19359
19378
  * cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
@@ -19372,7 +19391,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
19372
19391
  return __pyx_r;
19373
19392
  }
19374
19393
 
19375
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":780
19394
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":780
19376
19395
  * return PyArray_MultiIterNew(1, <void*>a)
19377
19396
  *
19378
19397
  * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
@@ -19389,7 +19408,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
19389
19408
  int __pyx_clineno = 0;
19390
19409
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 1);
19391
19410
 
19392
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":781
19411
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":781
19393
19412
  *
19394
19413
  * cdef inline object PyArray_MultiIterNew2(a, b):
19395
19414
  * return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
@@ -19403,7 +19422,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
19403
19422
  __pyx_t_1 = 0;
19404
19423
  goto __pyx_L0;
19405
19424
 
19406
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":780
19425
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":780
19407
19426
  * return PyArray_MultiIterNew(1, <void*>a)
19408
19427
  *
19409
19428
  * cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
@@ -19422,7 +19441,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
19422
19441
  return __pyx_r;
19423
19442
  }
19424
19443
 
19425
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":783
19444
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":783
19426
19445
  * return PyArray_MultiIterNew(2, <void*>a, <void*>b)
19427
19446
  *
19428
19447
  * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
@@ -19439,7 +19458,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
19439
19458
  int __pyx_clineno = 0;
19440
19459
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 1);
19441
19460
 
19442
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":784
19461
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":784
19443
19462
  *
19444
19463
  * cdef inline object PyArray_MultiIterNew3(a, b, c):
19445
19464
  * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
@@ -19453,7 +19472,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
19453
19472
  __pyx_t_1 = 0;
19454
19473
  goto __pyx_L0;
19455
19474
 
19456
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":783
19475
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":783
19457
19476
  * return PyArray_MultiIterNew(2, <void*>a, <void*>b)
19458
19477
  *
19459
19478
  * cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
@@ -19472,7 +19491,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
19472
19491
  return __pyx_r;
19473
19492
  }
19474
19493
 
19475
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":786
19494
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":786
19476
19495
  * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
19477
19496
  *
19478
19497
  * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
@@ -19489,7 +19508,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
19489
19508
  int __pyx_clineno = 0;
19490
19509
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 1);
19491
19510
 
19492
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":787
19511
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":787
19493
19512
  *
19494
19513
  * cdef inline object PyArray_MultiIterNew4(a, b, c, d):
19495
19514
  * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
@@ -19503,7 +19522,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
19503
19522
  __pyx_t_1 = 0;
19504
19523
  goto __pyx_L0;
19505
19524
 
19506
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":786
19525
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":786
19507
19526
  * return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
19508
19527
  *
19509
19528
  * cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
@@ -19522,7 +19541,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
19522
19541
  return __pyx_r;
19523
19542
  }
19524
19543
 
19525
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":789
19544
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":789
19526
19545
  * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
19527
19546
  *
19528
19547
  * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
@@ -19539,7 +19558,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
19539
19558
  int __pyx_clineno = 0;
19540
19559
  __Pyx_RefNannySetupContext("PyArray_MultiIterNew5", 1);
19541
19560
 
19542
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":790
19561
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":790
19543
19562
  *
19544
19563
  * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
19545
19564
  * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
@@ -19553,7 +19572,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
19553
19572
  __pyx_t_1 = 0;
19554
19573
  goto __pyx_L0;
19555
19574
 
19556
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":789
19575
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":789
19557
19576
  * return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
19558
19577
  *
19559
19578
  * cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
@@ -19572,7 +19591,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
19572
19591
  return __pyx_r;
19573
19592
  }
19574
19593
 
19575
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
19594
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
19576
19595
  * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
19577
19596
  *
19578
19597
  * cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
@@ -19586,7 +19605,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
19586
19605
  int __pyx_t_1;
19587
19606
  __Pyx_RefNannySetupContext("PyDataType_SHAPE", 1);
19588
19607
 
19589
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":793
19608
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":793
19590
19609
  *
19591
19610
  * cdef inline tuple PyDataType_SHAPE(dtype d):
19592
19611
  * if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
@@ -19596,7 +19615,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
19596
19615
  __pyx_t_1 = PyDataType_HASSUBARRAY(__pyx_v_d);
19597
19616
  if (__pyx_t_1) {
19598
19617
 
19599
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":794
19618
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":794
19600
19619
  * cdef inline tuple PyDataType_SHAPE(dtype d):
19601
19620
  * if PyDataType_HASSUBARRAY(d):
19602
19621
  * return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
@@ -19608,7 +19627,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
19608
19627
  __pyx_r = ((PyObject*)__pyx_v_d->subarray->shape);
19609
19628
  goto __pyx_L0;
19610
19629
 
19611
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":793
19630
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":793
19612
19631
  *
19613
19632
  * cdef inline tuple PyDataType_SHAPE(dtype d):
19614
19633
  * if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
@@ -19617,7 +19636,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
19617
19636
  */
19618
19637
  }
19619
19638
 
19620
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":796
19639
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":796
19621
19640
  * return <tuple>d.subarray.shape
19622
19641
  * else:
19623
19642
  * return () # <<<<<<<<<<<<<<
@@ -19631,7 +19650,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
19631
19650
  goto __pyx_L0;
19632
19651
  }
19633
19652
 
19634
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
19653
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
19635
19654
  * return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
19636
19655
  *
19637
19656
  * cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
@@ -19646,7 +19665,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
19646
19665
  return __pyx_r;
19647
19666
  }
19648
19667
 
19649
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":971
19668
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":971
19650
19669
  * int _import_umath() except -1
19651
19670
  *
19652
19671
  * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<<
@@ -19656,7 +19675,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
19656
19675
 
19657
19676
  static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_arr, PyObject *__pyx_v_base) {
19658
19677
 
19659
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":972
19678
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":972
19660
19679
  *
19661
19680
  * cdef inline void set_array_base(ndarray arr, object base):
19662
19681
  * Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
@@ -19665,7 +19684,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
19665
19684
  */
19666
19685
  Py_INCREF(__pyx_v_base);
19667
19686
 
19668
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":973
19687
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":973
19669
19688
  * cdef inline void set_array_base(ndarray arr, object base):
19670
19689
  * Py_INCREF(base) # important to do this before stealing the reference below!
19671
19690
  * PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
@@ -19674,7 +19693,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
19674
19693
  */
19675
19694
  (void)(PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base));
19676
19695
 
19677
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":971
19696
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":971
19678
19697
  * int _import_umath() except -1
19679
19698
  *
19680
19699
  * cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<<
@@ -19685,7 +19704,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
19685
19704
  /* function exit code */
19686
19705
  }
19687
19706
 
19688
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":975
19707
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":975
19689
19708
  * PyArray_SetBaseObject(arr, base)
19690
19709
  *
19691
19710
  * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
@@ -19700,7 +19719,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
19700
19719
  int __pyx_t_1;
19701
19720
  __Pyx_RefNannySetupContext("get_array_base", 1);
19702
19721
 
19703
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":976
19722
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":976
19704
19723
  *
19705
19724
  * cdef inline object get_array_base(ndarray arr):
19706
19725
  * base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
@@ -19709,7 +19728,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
19709
19728
  */
19710
19729
  __pyx_v_base = PyArray_BASE(__pyx_v_arr);
19711
19730
 
19712
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":977
19731
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":977
19713
19732
  * cdef inline object get_array_base(ndarray arr):
19714
19733
  * base = PyArray_BASE(arr)
19715
19734
  * if base is NULL: # <<<<<<<<<<<<<<
@@ -19719,7 +19738,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
19719
19738
  __pyx_t_1 = (__pyx_v_base == NULL);
19720
19739
  if (__pyx_t_1) {
19721
19740
 
19722
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":978
19741
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":978
19723
19742
  * base = PyArray_BASE(arr)
19724
19743
  * if base is NULL:
19725
19744
  * return None # <<<<<<<<<<<<<<
@@ -19730,7 +19749,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
19730
19749
  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
19731
19750
  goto __pyx_L0;
19732
19751
 
19733
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":977
19752
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":977
19734
19753
  * cdef inline object get_array_base(ndarray arr):
19735
19754
  * base = PyArray_BASE(arr)
19736
19755
  * if base is NULL: # <<<<<<<<<<<<<<
@@ -19739,7 +19758,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
19739
19758
  */
19740
19759
  }
19741
19760
 
19742
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":979
19761
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":979
19743
19762
  * if base is NULL:
19744
19763
  * return None
19745
19764
  * return <object>base # <<<<<<<<<<<<<<
@@ -19751,7 +19770,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
19751
19770
  __pyx_r = ((PyObject *)__pyx_v_base);
19752
19771
  goto __pyx_L0;
19753
19772
 
19754
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":975
19773
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":975
19755
19774
  * PyArray_SetBaseObject(arr, base)
19756
19775
  *
19757
19776
  * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
@@ -19766,7 +19785,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
19766
19785
  return __pyx_r;
19767
19786
  }
19768
19787
 
19769
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":983
19788
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":983
19770
19789
  * # Versions of the import_* functions which are more suitable for
19771
19790
  * # Cython code.
19772
19791
  * cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
@@ -19790,7 +19809,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
19790
19809
  int __pyx_clineno = 0;
19791
19810
  __Pyx_RefNannySetupContext("import_array", 1);
19792
19811
 
19793
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":984
19812
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":984
19794
19813
  * # Cython code.
19795
19814
  * cdef inline int import_array() except -1:
19796
19815
  * try: # <<<<<<<<<<<<<<
@@ -19806,7 +19825,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
19806
19825
  __Pyx_XGOTREF(__pyx_t_3);
19807
19826
  /*try:*/ {
19808
19827
 
19809
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":985
19828
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":985
19810
19829
  * cdef inline int import_array() except -1:
19811
19830
  * try:
19812
19831
  * __pyx_import_array() # <<<<<<<<<<<<<<
@@ -19815,7 +19834,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
19815
19834
  */
19816
19835
  __pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 985, __pyx_L3_error)
19817
19836
 
19818
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":984
19837
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":984
19819
19838
  * # Cython code.
19820
19839
  * cdef inline int import_array() except -1:
19821
19840
  * try: # <<<<<<<<<<<<<<
@@ -19829,7 +19848,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
19829
19848
  goto __pyx_L8_try_end;
19830
19849
  __pyx_L3_error:;
19831
19850
 
19832
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":986
19851
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":986
19833
19852
  * try:
19834
19853
  * __pyx_import_array()
19835
19854
  * except Exception: # <<<<<<<<<<<<<<
@@ -19844,7 +19863,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
19844
19863
  __Pyx_XGOTREF(__pyx_t_6);
19845
19864
  __Pyx_XGOTREF(__pyx_t_7);
19846
19865
 
19847
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":987
19866
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":987
19848
19867
  * __pyx_import_array()
19849
19868
  * except Exception:
19850
19869
  * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
@@ -19859,7 +19878,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
19859
19878
  }
19860
19879
  goto __pyx_L5_except_error;
19861
19880
 
19862
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":984
19881
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":984
19863
19882
  * # Cython code.
19864
19883
  * cdef inline int import_array() except -1:
19865
19884
  * try: # <<<<<<<<<<<<<<
@@ -19875,7 +19894,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
19875
19894
  __pyx_L8_try_end:;
19876
19895
  }
19877
19896
 
19878
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":983
19897
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":983
19879
19898
  * # Versions of the import_* functions which are more suitable for
19880
19899
  * # Cython code.
19881
19900
  * cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
@@ -19898,7 +19917,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
19898
19917
  return __pyx_r;
19899
19918
  }
19900
19919
 
19901
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":989
19920
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":989
19902
19921
  * raise ImportError("numpy.core.multiarray failed to import")
19903
19922
  *
19904
19923
  * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
@@ -19922,7 +19941,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
19922
19941
  int __pyx_clineno = 0;
19923
19942
  __Pyx_RefNannySetupContext("import_umath", 1);
19924
19943
 
19925
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":990
19944
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":990
19926
19945
  *
19927
19946
  * cdef inline int import_umath() except -1:
19928
19947
  * try: # <<<<<<<<<<<<<<
@@ -19938,7 +19957,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
19938
19957
  __Pyx_XGOTREF(__pyx_t_3);
19939
19958
  /*try:*/ {
19940
19959
 
19941
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":991
19960
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":991
19942
19961
  * cdef inline int import_umath() except -1:
19943
19962
  * try:
19944
19963
  * _import_umath() # <<<<<<<<<<<<<<
@@ -19947,7 +19966,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
19947
19966
  */
19948
19967
  __pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 991, __pyx_L3_error)
19949
19968
 
19950
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":990
19969
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":990
19951
19970
  *
19952
19971
  * cdef inline int import_umath() except -1:
19953
19972
  * try: # <<<<<<<<<<<<<<
@@ -19961,7 +19980,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
19961
19980
  goto __pyx_L8_try_end;
19962
19981
  __pyx_L3_error:;
19963
19982
 
19964
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":992
19983
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":992
19965
19984
  * try:
19966
19985
  * _import_umath()
19967
19986
  * except Exception: # <<<<<<<<<<<<<<
@@ -19976,7 +19995,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
19976
19995
  __Pyx_XGOTREF(__pyx_t_6);
19977
19996
  __Pyx_XGOTREF(__pyx_t_7);
19978
19997
 
19979
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":993
19998
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":993
19980
19999
  * _import_umath()
19981
20000
  * except Exception:
19982
20001
  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
@@ -19991,7 +20010,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
19991
20010
  }
19992
20011
  goto __pyx_L5_except_error;
19993
20012
 
19994
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":990
20013
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":990
19995
20014
  *
19996
20015
  * cdef inline int import_umath() except -1:
19997
20016
  * try: # <<<<<<<<<<<<<<
@@ -20007,7 +20026,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
20007
20026
  __pyx_L8_try_end:;
20008
20027
  }
20009
20028
 
20010
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":989
20029
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":989
20011
20030
  * raise ImportError("numpy.core.multiarray failed to import")
20012
20031
  *
20013
20032
  * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
@@ -20030,7 +20049,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
20030
20049
  return __pyx_r;
20031
20050
  }
20032
20051
 
20033
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
20052
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
20034
20053
  * raise ImportError("numpy.core.umath failed to import")
20035
20054
  *
20036
20055
  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
@@ -20054,7 +20073,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20054
20073
  int __pyx_clineno = 0;
20055
20074
  __Pyx_RefNannySetupContext("import_ufunc", 1);
20056
20075
 
20057
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
20076
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
20058
20077
  *
20059
20078
  * cdef inline int import_ufunc() except -1:
20060
20079
  * try: # <<<<<<<<<<<<<<
@@ -20070,7 +20089,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20070
20089
  __Pyx_XGOTREF(__pyx_t_3);
20071
20090
  /*try:*/ {
20072
20091
 
20073
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":997
20092
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":997
20074
20093
  * cdef inline int import_ufunc() except -1:
20075
20094
  * try:
20076
20095
  * _import_umath() # <<<<<<<<<<<<<<
@@ -20079,7 +20098,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20079
20098
  */
20080
20099
  __pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 997, __pyx_L3_error)
20081
20100
 
20082
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
20101
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
20083
20102
  *
20084
20103
  * cdef inline int import_ufunc() except -1:
20085
20104
  * try: # <<<<<<<<<<<<<<
@@ -20093,7 +20112,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20093
20112
  goto __pyx_L8_try_end;
20094
20113
  __pyx_L3_error:;
20095
20114
 
20096
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
20115
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
20097
20116
  * try:
20098
20117
  * _import_umath()
20099
20118
  * except Exception: # <<<<<<<<<<<<<<
@@ -20108,7 +20127,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20108
20127
  __Pyx_XGOTREF(__pyx_t_6);
20109
20128
  __Pyx_XGOTREF(__pyx_t_7);
20110
20129
 
20111
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":999
20130
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":999
20112
20131
  * _import_umath()
20113
20132
  * except Exception:
20114
20133
  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
@@ -20123,7 +20142,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20123
20142
  }
20124
20143
  goto __pyx_L5_except_error;
20125
20144
 
20126
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
20145
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
20127
20146
  *
20128
20147
  * cdef inline int import_ufunc() except -1:
20129
20148
  * try: # <<<<<<<<<<<<<<
@@ -20139,7 +20158,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20139
20158
  __pyx_L8_try_end:;
20140
20159
  }
20141
20160
 
20142
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
20161
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
20143
20162
  * raise ImportError("numpy.core.umath failed to import")
20144
20163
  *
20145
20164
  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
@@ -20162,7 +20181,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20162
20181
  return __pyx_r;
20163
20182
  }
20164
20183
 
20165
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1002
20184
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1002
20166
20185
  *
20167
20186
  *
20168
20187
  * cdef inline bint is_timedelta64_object(object obj): # <<<<<<<<<<<<<<
@@ -20173,7 +20192,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
20173
20192
  static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
20174
20193
  int __pyx_r;
20175
20194
 
20176
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1014
20195
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1014
20177
20196
  * bool
20178
20197
  * """
20179
20198
  * return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
@@ -20183,7 +20202,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
20183
20202
  __pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
20184
20203
  goto __pyx_L0;
20185
20204
 
20186
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1002
20205
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1002
20187
20206
  *
20188
20207
  *
20189
20208
  * cdef inline bint is_timedelta64_object(object obj): # <<<<<<<<<<<<<<
@@ -20196,7 +20215,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
20196
20215
  return __pyx_r;
20197
20216
  }
20198
20217
 
20199
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1017
20218
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1017
20200
20219
  *
20201
20220
  *
20202
20221
  * cdef inline bint is_datetime64_object(object obj): # <<<<<<<<<<<<<<
@@ -20207,7 +20226,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
20207
20226
  static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
20208
20227
  int __pyx_r;
20209
20228
 
20210
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1029
20229
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1029
20211
20230
  * bool
20212
20231
  * """
20213
20232
  * return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
@@ -20217,7 +20236,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
20217
20236
  __pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
20218
20237
  goto __pyx_L0;
20219
20238
 
20220
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1017
20239
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1017
20221
20240
  *
20222
20241
  *
20223
20242
  * cdef inline bint is_datetime64_object(object obj): # <<<<<<<<<<<<<<
@@ -20230,7 +20249,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
20230
20249
  return __pyx_r;
20231
20250
  }
20232
20251
 
20233
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1032
20252
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1032
20234
20253
  *
20235
20254
  *
20236
20255
  * cdef inline npy_datetime get_datetime64_value(object obj) nogil: # <<<<<<<<<<<<<<
@@ -20241,7 +20260,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
20241
20260
  static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
20242
20261
  npy_datetime __pyx_r;
20243
20262
 
20244
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1039
20263
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1039
20245
20264
  * also needed. That can be found using `get_datetime64_unit`.
20246
20265
  * """
20247
20266
  * return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
@@ -20251,7 +20270,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
20251
20270
  __pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
20252
20271
  goto __pyx_L0;
20253
20272
 
20254
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1032
20273
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1032
20255
20274
  *
20256
20275
  *
20257
20276
  * cdef inline npy_datetime get_datetime64_value(object obj) nogil: # <<<<<<<<<<<<<<
@@ -20264,7 +20283,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
20264
20283
  return __pyx_r;
20265
20284
  }
20266
20285
 
20267
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1042
20286
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1042
20268
20287
  *
20269
20288
  *
20270
20289
  * cdef inline npy_timedelta get_timedelta64_value(object obj) nogil: # <<<<<<<<<<<<<<
@@ -20275,7 +20294,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
20275
20294
  static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
20276
20295
  npy_timedelta __pyx_r;
20277
20296
 
20278
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1046
20297
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1046
20279
20298
  * returns the int64 value underlying scalar numpy timedelta64 object
20280
20299
  * """
20281
20300
  * return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
@@ -20285,7 +20304,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
20285
20304
  __pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
20286
20305
  goto __pyx_L0;
20287
20306
 
20288
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1042
20307
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1042
20289
20308
  *
20290
20309
  *
20291
20310
  * cdef inline npy_timedelta get_timedelta64_value(object obj) nogil: # <<<<<<<<<<<<<<
@@ -20298,7 +20317,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
20298
20317
  return __pyx_r;
20299
20318
  }
20300
20319
 
20301
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1049
20320
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1049
20302
20321
  *
20303
20322
  *
20304
20323
  * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
@@ -20309,7 +20328,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
20309
20328
  static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
20310
20329
  NPY_DATETIMEUNIT __pyx_r;
20311
20330
 
20312
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1053
20331
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1053
20313
20332
  * returns the unit part of the dtype for a numpy datetime64 object.
20314
20333
  * """
20315
20334
  * return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
@@ -20317,7 +20336,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
20317
20336
  __pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
20318
20337
  goto __pyx_L0;
20319
20338
 
20320
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1049
20339
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1049
20321
20340
  *
20322
20341
  *
20323
20342
  * cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
@@ -24696,10 +24715,10 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
24696
24715
  Py_ssize_t __pyx_v_itemsize;
24697
24716
  int __pyx_v_dtype_signed;
24698
24717
  Py_UCS4 __pyx_v_kind;
24699
- int __pyx_v____pyx_uint8_is_signed;
24700
- int __pyx_v____pyx_uint16_is_signed;
24701
- int __pyx_v____pyx_uint32_is_signed;
24702
- int __pyx_v____pyx_uint64_is_signed;
24718
+ int __pyx_v___pyx_fused_dtype_uint8_is_signed;
24719
+ int __pyx_v___pyx_fused_dtype_uint16_is_signed;
24720
+ int __pyx_v___pyx_fused_dtype_uint32_is_signed;
24721
+ int __pyx_v___pyx_fused_dtype_uint64_is_signed;
24703
24722
  PyObject *__pyx_v_arg = NULL;
24704
24723
  PyObject *__pyx_v_dtype = NULL;
24705
24724
  PyObject *__pyx_v_arg_base = NULL;
@@ -24771,10 +24790,10 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
24771
24790
  __pyx_v_ndarray = ((PyTypeObject*)__pyx_t_1);
24772
24791
  __pyx_t_1 = 0;
24773
24792
  __pyx_v_itemsize = -1L;
24774
- __pyx_v____pyx_uint8_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint8)-1L) > 0));
24775
- __pyx_v____pyx_uint16_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint16)-1L) > 0));
24776
- __pyx_v____pyx_uint32_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint32)-1L) > 0));
24777
- __pyx_v____pyx_uint64_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint64)-1L) > 0));
24793
+ __pyx_v___pyx_fused_dtype_uint8_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint8)-1L) > 0));
24794
+ __pyx_v___pyx_fused_dtype_uint16_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint16)-1L) > 0));
24795
+ __pyx_v___pyx_fused_dtype_uint32_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint32)-1L) > 0));
24796
+ __pyx_v___pyx_fused_dtype_uint64_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint64)-1L) > 0));
24778
24797
  if (unlikely(__pyx_v_args == Py_None)) {
24779
24798
  PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
24780
24799
  __PYX_ERR(0, 428, __pyx_L1_error)
@@ -24916,7 +24935,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
24916
24935
  __pyx_t_2 = __pyx_t_4;
24917
24936
  goto __pyx_L16_bool_binop_done;
24918
24937
  }
24919
- __pyx_t_4 = (!(__pyx_v____pyx_uint8_is_signed ^ __pyx_v_dtype_signed));
24938
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint8_is_signed ^ __pyx_v_dtype_signed));
24920
24939
  __pyx_t_2 = __pyx_t_4;
24921
24940
  __pyx_L16_bool_binop_done:;
24922
24941
  if (__pyx_t_2) {
@@ -24939,7 +24958,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
24939
24958
  __pyx_t_2 = __pyx_t_4;
24940
24959
  goto __pyx_L20_bool_binop_done;
24941
24960
  }
24942
- __pyx_t_4 = (!(__pyx_v____pyx_uint16_is_signed ^ __pyx_v_dtype_signed));
24961
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint16_is_signed ^ __pyx_v_dtype_signed));
24943
24962
  __pyx_t_2 = __pyx_t_4;
24944
24963
  __pyx_L20_bool_binop_done:;
24945
24964
  if (__pyx_t_2) {
@@ -24962,7 +24981,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
24962
24981
  __pyx_t_2 = __pyx_t_4;
24963
24982
  goto __pyx_L24_bool_binop_done;
24964
24983
  }
24965
- __pyx_t_4 = (!(__pyx_v____pyx_uint32_is_signed ^ __pyx_v_dtype_signed));
24984
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint32_is_signed ^ __pyx_v_dtype_signed));
24966
24985
  __pyx_t_2 = __pyx_t_4;
24967
24986
  __pyx_L24_bool_binop_done:;
24968
24987
  if (__pyx_t_2) {
@@ -24985,7 +25004,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
24985
25004
  __pyx_t_2 = __pyx_t_4;
24986
25005
  goto __pyx_L28_bool_binop_done;
24987
25006
  }
24988
- __pyx_t_4 = (!(__pyx_v____pyx_uint64_is_signed ^ __pyx_v_dtype_signed));
25007
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint64_is_signed ^ __pyx_v_dtype_signed));
24989
25008
  __pyx_t_2 = __pyx_t_4;
24990
25009
  __pyx_L28_bool_binop_done:;
24991
25010
  if (__pyx_t_2) {
@@ -25346,7 +25365,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
25346
25365
  __pyx_t_2 = __pyx_t_4;
25347
25366
  goto __pyx_L75_bool_binop_done;
25348
25367
  }
25349
- __pyx_t_4 = (!(__pyx_v____pyx_uint8_is_signed ^ __pyx_v_dtype_signed));
25368
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint8_is_signed ^ __pyx_v_dtype_signed));
25350
25369
  __pyx_t_2 = __pyx_t_4;
25351
25370
  __pyx_L75_bool_binop_done:;
25352
25371
  if (__pyx_t_2) {
@@ -25369,7 +25388,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
25369
25388
  __pyx_t_2 = __pyx_t_4;
25370
25389
  goto __pyx_L79_bool_binop_done;
25371
25390
  }
25372
- __pyx_t_4 = (!(__pyx_v____pyx_uint16_is_signed ^ __pyx_v_dtype_signed));
25391
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint16_is_signed ^ __pyx_v_dtype_signed));
25373
25392
  __pyx_t_2 = __pyx_t_4;
25374
25393
  __pyx_L79_bool_binop_done:;
25375
25394
  if (__pyx_t_2) {
@@ -25392,7 +25411,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
25392
25411
  __pyx_t_2 = __pyx_t_4;
25393
25412
  goto __pyx_L83_bool_binop_done;
25394
25413
  }
25395
- __pyx_t_4 = (!(__pyx_v____pyx_uint32_is_signed ^ __pyx_v_dtype_signed));
25414
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint32_is_signed ^ __pyx_v_dtype_signed));
25396
25415
  __pyx_t_2 = __pyx_t_4;
25397
25416
  __pyx_L83_bool_binop_done:;
25398
25417
  if (__pyx_t_2) {
@@ -25415,7 +25434,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_2_fill_align_table(C
25415
25434
  __pyx_t_2 = __pyx_t_4;
25416
25435
  goto __pyx_L87_bool_binop_done;
25417
25436
  }
25418
- __pyx_t_4 = (!(__pyx_v____pyx_uint64_is_signed ^ __pyx_v_dtype_signed));
25437
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint64_is_signed ^ __pyx_v_dtype_signed));
25419
25438
  __pyx_t_2 = __pyx_t_4;
25420
25439
  __pyx_L87_bool_binop_done:;
25421
25440
  if (__pyx_t_2) {
@@ -33856,10 +33875,10 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
33856
33875
  Py_ssize_t __pyx_v_itemsize;
33857
33876
  int __pyx_v_dtype_signed;
33858
33877
  Py_UCS4 __pyx_v_kind;
33859
- int __pyx_v____pyx_uint8_is_signed;
33860
- int __pyx_v____pyx_uint16_is_signed;
33861
- int __pyx_v____pyx_uint32_is_signed;
33862
- int __pyx_v____pyx_uint64_is_signed;
33878
+ int __pyx_v___pyx_fused_dtype_uint8_is_signed;
33879
+ int __pyx_v___pyx_fused_dtype_uint16_is_signed;
33880
+ int __pyx_v___pyx_fused_dtype_uint32_is_signed;
33881
+ int __pyx_v___pyx_fused_dtype_uint64_is_signed;
33863
33882
  PyObject *__pyx_v_arg = NULL;
33864
33883
  PyObject *__pyx_v_dtype = NULL;
33865
33884
  PyObject *__pyx_v_arg_base = NULL;
@@ -33931,10 +33950,10 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
33931
33950
  __pyx_v_ndarray = ((PyTypeObject*)__pyx_t_1);
33932
33951
  __pyx_t_1 = 0;
33933
33952
  __pyx_v_itemsize = -1L;
33934
- __pyx_v____pyx_uint8_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint8)-1L) > 0));
33935
- __pyx_v____pyx_uint16_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint16)-1L) > 0));
33936
- __pyx_v____pyx_uint32_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint32)-1L) > 0));
33937
- __pyx_v____pyx_uint64_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint64)-1L) > 0));
33953
+ __pyx_v___pyx_fused_dtype_uint8_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint8)-1L) > 0));
33954
+ __pyx_v___pyx_fused_dtype_uint16_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint16)-1L) > 0));
33955
+ __pyx_v___pyx_fused_dtype_uint32_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint32)-1L) > 0));
33956
+ __pyx_v___pyx_fused_dtype_uint64_is_signed = (!(((__pyx_t_7biotite_8sequence_5align_6banded_uint64)-1L) > 0));
33938
33957
  if (unlikely(__pyx_v_args == Py_None)) {
33939
33958
  PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
33940
33959
  __PYX_ERR(0, 502, __pyx_L1_error)
@@ -34076,7 +34095,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
34076
34095
  __pyx_t_2 = __pyx_t_4;
34077
34096
  goto __pyx_L16_bool_binop_done;
34078
34097
  }
34079
- __pyx_t_4 = (!(__pyx_v____pyx_uint8_is_signed ^ __pyx_v_dtype_signed));
34098
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint8_is_signed ^ __pyx_v_dtype_signed));
34080
34099
  __pyx_t_2 = __pyx_t_4;
34081
34100
  __pyx_L16_bool_binop_done:;
34082
34101
  if (__pyx_t_2) {
@@ -34099,7 +34118,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
34099
34118
  __pyx_t_2 = __pyx_t_4;
34100
34119
  goto __pyx_L20_bool_binop_done;
34101
34120
  }
34102
- __pyx_t_4 = (!(__pyx_v____pyx_uint16_is_signed ^ __pyx_v_dtype_signed));
34121
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint16_is_signed ^ __pyx_v_dtype_signed));
34103
34122
  __pyx_t_2 = __pyx_t_4;
34104
34123
  __pyx_L20_bool_binop_done:;
34105
34124
  if (__pyx_t_2) {
@@ -34122,7 +34141,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
34122
34141
  __pyx_t_2 = __pyx_t_4;
34123
34142
  goto __pyx_L24_bool_binop_done;
34124
34143
  }
34125
- __pyx_t_4 = (!(__pyx_v____pyx_uint32_is_signed ^ __pyx_v_dtype_signed));
34144
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint32_is_signed ^ __pyx_v_dtype_signed));
34126
34145
  __pyx_t_2 = __pyx_t_4;
34127
34146
  __pyx_L24_bool_binop_done:;
34128
34147
  if (__pyx_t_2) {
@@ -34145,7 +34164,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
34145
34164
  __pyx_t_2 = __pyx_t_4;
34146
34165
  goto __pyx_L28_bool_binop_done;
34147
34166
  }
34148
- __pyx_t_4 = (!(__pyx_v____pyx_uint64_is_signed ^ __pyx_v_dtype_signed));
34167
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint64_is_signed ^ __pyx_v_dtype_signed));
34149
34168
  __pyx_t_2 = __pyx_t_4;
34150
34169
  __pyx_L28_bool_binop_done:;
34151
34170
  if (__pyx_t_2) {
@@ -34506,7 +34525,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
34506
34525
  __pyx_t_2 = __pyx_t_4;
34507
34526
  goto __pyx_L75_bool_binop_done;
34508
34527
  }
34509
- __pyx_t_4 = (!(__pyx_v____pyx_uint8_is_signed ^ __pyx_v_dtype_signed));
34528
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint8_is_signed ^ __pyx_v_dtype_signed));
34510
34529
  __pyx_t_2 = __pyx_t_4;
34511
34530
  __pyx_L75_bool_binop_done:;
34512
34531
  if (__pyx_t_2) {
@@ -34529,7 +34548,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
34529
34548
  __pyx_t_2 = __pyx_t_4;
34530
34549
  goto __pyx_L79_bool_binop_done;
34531
34550
  }
34532
- __pyx_t_4 = (!(__pyx_v____pyx_uint16_is_signed ^ __pyx_v_dtype_signed));
34551
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint16_is_signed ^ __pyx_v_dtype_signed));
34533
34552
  __pyx_t_2 = __pyx_t_4;
34534
34553
  __pyx_L79_bool_binop_done:;
34535
34554
  if (__pyx_t_2) {
@@ -34552,7 +34571,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
34552
34571
  __pyx_t_2 = __pyx_t_4;
34553
34572
  goto __pyx_L83_bool_binop_done;
34554
34573
  }
34555
- __pyx_t_4 = (!(__pyx_v____pyx_uint32_is_signed ^ __pyx_v_dtype_signed));
34574
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint32_is_signed ^ __pyx_v_dtype_signed));
34556
34575
  __pyx_t_2 = __pyx_t_4;
34557
34576
  __pyx_L83_bool_binop_done:;
34558
34577
  if (__pyx_t_2) {
@@ -34575,7 +34594,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5align_6banded_4_fill_align_table_a
34575
34594
  __pyx_t_2 = __pyx_t_4;
34576
34595
  goto __pyx_L87_bool_binop_done;
34577
34596
  }
34578
- __pyx_t_4 = (!(__pyx_v____pyx_uint64_is_signed ^ __pyx_v_dtype_signed));
34597
+ __pyx_t_4 = (!(__pyx_v___pyx_fused_dtype_uint64_is_signed ^ __pyx_v_dtype_signed));
34579
34598
  __pyx_t_2 = __pyx_t_4;
34580
34599
  __pyx_L87_bool_binop_done:;
34581
34600
  if (__pyx_t_2) {
@@ -48456,7 +48475,7 @@ static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) {
48456
48475
  __Pyx_GOTREF(__pyx_tuple__8);
48457
48476
  __Pyx_GIVEREF(__pyx_tuple__8);
48458
48477
 
48459
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":987
48478
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":987
48460
48479
  * __pyx_import_array()
48461
48480
  * except Exception:
48462
48481
  * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
@@ -48467,7 +48486,7 @@ static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) {
48467
48486
  __Pyx_GOTREF(__pyx_tuple__9);
48468
48487
  __Pyx_GIVEREF(__pyx_tuple__9);
48469
48488
 
48470
- /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-n889v233/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":993
48489
+ /* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-tu_hrx72/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":993
48471
48490
  * _import_umath()
48472
48491
  * except Exception:
48473
48492
  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
@@ -49020,33 +49039,33 @@ static int __Pyx_modinit_type_import_code(void) {
49020
49039
  /*--- Type import code ---*/
49021
49040
  __pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 9, __pyx_L1_error)
49022
49041
  __Pyx_GOTREF(__pyx_t_1);
49023
- __pyx_ptype_7cpython_4type_type = __Pyx_ImportType_3_0_7(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type",
49042
+ __pyx_ptype_7cpython_4type_type = __Pyx_ImportType_3_0_10(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type",
49024
49043
  #if defined(PYPY_VERSION_NUM) && PYPY_VERSION_NUM < 0x050B0000
49025
- sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyTypeObject),
49044
+ sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyTypeObject),
49026
49045
  #elif CYTHON_COMPILING_IN_LIMITED_API
49027
- sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyTypeObject),
49046
+ sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyTypeObject),
49028
49047
  #else
49029
- sizeof(PyHeapTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyHeapTypeObject),
49048
+ sizeof(PyHeapTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyHeapTypeObject),
49030
49049
  #endif
49031
- __Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_7cpython_4type_type) __PYX_ERR(3, 9, __pyx_L1_error)
49050
+ __Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_7cpython_4type_type) __PYX_ERR(3, 9, __pyx_L1_error)
49032
49051
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
49033
49052
  __pyx_t_1 = PyImport_ImportModule("numpy"); if (unlikely(!__pyx_t_1)) __PYX_ERR(2, 203, __pyx_L1_error)
49034
49053
  __Pyx_GOTREF(__pyx_t_1);
49035
- __pyx_ptype_5numpy_dtype = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "dtype", sizeof(PyArray_Descr), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyArray_Descr),__Pyx_ImportType_CheckSize_Ignore_3_0_7); if (!__pyx_ptype_5numpy_dtype) __PYX_ERR(2, 203, __pyx_L1_error)
49036
- __pyx_ptype_5numpy_flatiter = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "flatiter", sizeof(PyArrayIterObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyArrayIterObject),__Pyx_ImportType_CheckSize_Ignore_3_0_7); if (!__pyx_ptype_5numpy_flatiter) __PYX_ERR(2, 226, __pyx_L1_error)
49037
- __pyx_ptype_5numpy_broadcast = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "broadcast", sizeof(PyArrayMultiIterObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyArrayMultiIterObject),__Pyx_ImportType_CheckSize_Ignore_3_0_7); if (!__pyx_ptype_5numpy_broadcast) __PYX_ERR(2, 230, __pyx_L1_error)
49038
- __pyx_ptype_5numpy_ndarray = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "ndarray", sizeof(PyArrayObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyArrayObject),__Pyx_ImportType_CheckSize_Ignore_3_0_7); if (!__pyx_ptype_5numpy_ndarray) __PYX_ERR(2, 239, __pyx_L1_error)
49039
- __pyx_ptype_5numpy_generic = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "generic", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_generic) __PYX_ERR(2, 813, __pyx_L1_error)
49040
- __pyx_ptype_5numpy_number = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "number", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_number) __PYX_ERR(2, 815, __pyx_L1_error)
49041
- __pyx_ptype_5numpy_integer = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "integer", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_integer) __PYX_ERR(2, 817, __pyx_L1_error)
49042
- __pyx_ptype_5numpy_signedinteger = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "signedinteger", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_signedinteger) __PYX_ERR(2, 819, __pyx_L1_error)
49043
- __pyx_ptype_5numpy_unsignedinteger = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "unsignedinteger", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_unsignedinteger) __PYX_ERR(2, 821, __pyx_L1_error)
49044
- __pyx_ptype_5numpy_inexact = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "inexact", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_inexact) __PYX_ERR(2, 823, __pyx_L1_error)
49045
- __pyx_ptype_5numpy_floating = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "floating", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_floating) __PYX_ERR(2, 825, __pyx_L1_error)
49046
- __pyx_ptype_5numpy_complexfloating = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "complexfloating", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_complexfloating) __PYX_ERR(2, 827, __pyx_L1_error)
49047
- __pyx_ptype_5numpy_flexible = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "flexible", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_flexible) __PYX_ERR(2, 829, __pyx_L1_error)
49048
- __pyx_ptype_5numpy_character = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "character", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_7); if (!__pyx_ptype_5numpy_character) __PYX_ERR(2, 831, __pyx_L1_error)
49049
- __pyx_ptype_5numpy_ufunc = __Pyx_ImportType_3_0_7(__pyx_t_1, "numpy", "ufunc", sizeof(PyUFuncObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_7(PyUFuncObject),__Pyx_ImportType_CheckSize_Ignore_3_0_7); if (!__pyx_ptype_5numpy_ufunc) __PYX_ERR(2, 869, __pyx_L1_error)
49054
+ __pyx_ptype_5numpy_dtype = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "dtype", sizeof(PyArray_Descr), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyArray_Descr),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_dtype) __PYX_ERR(2, 203, __pyx_L1_error)
49055
+ __pyx_ptype_5numpy_flatiter = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "flatiter", sizeof(PyArrayIterObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyArrayIterObject),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_flatiter) __PYX_ERR(2, 226, __pyx_L1_error)
49056
+ __pyx_ptype_5numpy_broadcast = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "broadcast", sizeof(PyArrayMultiIterObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyArrayMultiIterObject),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_broadcast) __PYX_ERR(2, 230, __pyx_L1_error)
49057
+ __pyx_ptype_5numpy_ndarray = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "ndarray", sizeof(PyArrayObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyArrayObject),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_ndarray) __PYX_ERR(2, 239, __pyx_L1_error)
49058
+ __pyx_ptype_5numpy_generic = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "generic", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_generic) __PYX_ERR(2, 813, __pyx_L1_error)
49059
+ __pyx_ptype_5numpy_number = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "number", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_number) __PYX_ERR(2, 815, __pyx_L1_error)
49060
+ __pyx_ptype_5numpy_integer = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "integer", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_integer) __PYX_ERR(2, 817, __pyx_L1_error)
49061
+ __pyx_ptype_5numpy_signedinteger = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "signedinteger", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_signedinteger) __PYX_ERR(2, 819, __pyx_L1_error)
49062
+ __pyx_ptype_5numpy_unsignedinteger = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "unsignedinteger", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_unsignedinteger) __PYX_ERR(2, 821, __pyx_L1_error)
49063
+ __pyx_ptype_5numpy_inexact = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "inexact", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_inexact) __PYX_ERR(2, 823, __pyx_L1_error)
49064
+ __pyx_ptype_5numpy_floating = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "floating", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_floating) __PYX_ERR(2, 825, __pyx_L1_error)
49065
+ __pyx_ptype_5numpy_complexfloating = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "complexfloating", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_complexfloating) __PYX_ERR(2, 827, __pyx_L1_error)
49066
+ __pyx_ptype_5numpy_flexible = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "flexible", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_flexible) __PYX_ERR(2, 829, __pyx_L1_error)
49067
+ __pyx_ptype_5numpy_character = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "character", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_character) __PYX_ERR(2, 831, __pyx_L1_error)
49068
+ __pyx_ptype_5numpy_ufunc = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "ufunc", sizeof(PyUFuncObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyUFuncObject),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_ufunc) __PYX_ERR(2, 869, __pyx_L1_error)
49050
49069
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
49051
49070
  __Pyx_RefNannyFinishContext();
49052
49071
  return 0;
@@ -49074,9 +49093,9 @@ static int __Pyx_modinit_function_import_code(void) {
49074
49093
  /*--- Function import code ---*/
49075
49094
  __pyx_t_1 = PyImport_ImportModule("biotite.sequence.align.tracetable"); if (!__pyx_t_1) __PYX_ERR(0, 1, __pyx_L1_error)
49076
49095
  __Pyx_GOTREF(__pyx_t_1);
49077
- if (__Pyx_ImportFunction_3_0_7(__pyx_t_1, "get_trace_linear", (void (**)(void))&__pyx_f_7biotite_8sequence_5align_10tracetable_get_trace_linear, "__pyx_t_5numpy_uint8_t (__pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t *)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
49078
- if (__Pyx_ImportFunction_3_0_7(__pyx_t_1, "get_trace_affine", (void (**)(void))&__pyx_f_7biotite_8sequence_5align_10tracetable_get_trace_affine, "__pyx_t_5numpy_uint8_t (__pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t *, __pyx_t_5numpy_int32_t *, __pyx_t_5numpy_int32_t *)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
49079
- if (__Pyx_ImportFunction_3_0_7(__pyx_t_1, "follow_trace", (void (**)(void))&__pyx_f_7biotite_8sequence_5align_10tracetable_follow_trace, "int (__Pyx_memviewslice, int, int, int, int, __Pyx_memviewslice, PyObject *, int, int *, int, int, int)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
49096
+ if (__Pyx_ImportFunction_3_0_10(__pyx_t_1, "get_trace_linear", (void (**)(void))&__pyx_f_7biotite_8sequence_5align_10tracetable_get_trace_linear, "__pyx_t_5numpy_uint8_t (__pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t *)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
49097
+ if (__Pyx_ImportFunction_3_0_10(__pyx_t_1, "get_trace_affine", (void (**)(void))&__pyx_f_7biotite_8sequence_5align_10tracetable_get_trace_affine, "__pyx_t_5numpy_uint8_t (__pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t, __pyx_t_5numpy_int32_t *, __pyx_t_5numpy_int32_t *, __pyx_t_5numpy_int32_t *)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
49098
+ if (__Pyx_ImportFunction_3_0_10(__pyx_t_1, "follow_trace", (void (**)(void))&__pyx_f_7biotite_8sequence_5align_10tracetable_follow_trace, "int (__Pyx_memviewslice, int, int, int, int, __Pyx_memviewslice, PyObject *, int, int *, int, int, int)") < 0) __PYX_ERR(0, 1, __pyx_L1_error)
49080
49099
  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
49081
49100
  __Pyx_RefNannyFinishContext();
49082
49101
  return 0;
@@ -50663,11 +50682,11 @@ static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyO
50663
50682
  {
50664
50683
  int eq = __Pyx_PyUnicode_Equals(s, PyTuple_GET_ITEM(kwnames, i), Py_EQ);
50665
50684
  if (unlikely(eq != 0)) {
50666
- if (unlikely(eq < 0)) return NULL; // error
50685
+ if (unlikely(eq < 0)) return NULL;
50667
50686
  return kwvalues[i];
50668
50687
  }
50669
50688
  }
50670
- return NULL; // not found (no exception set)
50689
+ return NULL;
50671
50690
  }
50672
50691
  #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000
50673
50692
  CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) {
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50780
50799
  if (*name) {
50781
50800
  values[name-argnames] = value;
50782
50801
  #if CYTHON_AVOID_BORROWED_REFS
50783
- Py_INCREF(value); // transfer ownership of value to values
50802
+ Py_INCREF(value);
50784
50803
  Py_DECREF(key);
50785
50804
  #endif
50786
50805
  key = NULL;
@@ -50799,7 +50818,7 @@ static int __Pyx_ParseOptionalKeywords(
50799
50818
  && _PyString_Eq(**name, key)) {
50800
50819
  values[name-argnames] = value;
50801
50820
  #if CYTHON_AVOID_BORROWED_REFS
50802
- value = NULL; // ownership transferred to values
50821
+ value = NULL;
50803
50822
  #endif
50804
50823
  break;
50805
50824
  }
@@ -50831,7 +50850,7 @@ static int __Pyx_ParseOptionalKeywords(
50831
50850
  if (cmp == 0) {
50832
50851
  values[name-argnames] = value;
50833
50852
  #if CYTHON_AVOID_BORROWED_REFS
50834
- value = NULL; // ownership transferred to values
50853
+ value = NULL;
50835
50854
  #endif
50836
50855
  break;
50837
50856
  }
@@ -52856,9 +52875,10 @@ static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval,
52856
52875
 
52857
52876
  /* IterFinish */
52858
52877
  static CYTHON_INLINE int __Pyx_IterFinish(void) {
52878
+ PyObject* exc_type;
52859
52879
  __Pyx_PyThreadState_declare
52860
52880
  __Pyx_PyThreadState_assign
52861
- PyObject* exc_type = __Pyx_PyErr_CurrentExceptionType();
52881
+ exc_type = __Pyx_PyErr_CurrentExceptionType();
52862
52882
  if (unlikely(exc_type)) {
52863
52883
  if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)))
52864
52884
  return -1;
@@ -53339,9 +53359,10 @@ static CYTHON_INLINE int __Pyx_dict_iter_next(
53339
53359
 
53340
53360
  /* UnpackUnboundCMethod */
53341
53361
  static PyObject *__Pyx_SelflessCall(PyObject *method, PyObject *args, PyObject *kwargs) {
53362
+ PyObject *result;
53342
53363
  PyObject *selfless_args = PyTuple_GetSlice(args, 1, PyTuple_Size(args));
53343
53364
  if (unlikely(!selfless_args)) return NULL;
53344
- PyObject *result = PyObject_Call(method, selfless_args, kwargs);
53365
+ result = PyObject_Call(method, selfless_args, kwargs);
53345
53366
  Py_DECREF(selfless_args);
53346
53367
  return result;
53347
53368
  }
@@ -54191,10 +54212,10 @@ __PYX_GOOD:
54191
54212
  #endif
54192
54213
 
54193
54214
  /* TypeImport */
54194
- #ifndef __PYX_HAVE_RT_ImportType_3_0_7
54195
- #define __PYX_HAVE_RT_ImportType_3_0_7
54196
- static PyTypeObject *__Pyx_ImportType_3_0_7(PyObject *module, const char *module_name, const char *class_name,
54197
- size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_7 check_size)
54215
+ #ifndef __PYX_HAVE_RT_ImportType_3_0_10
54216
+ #define __PYX_HAVE_RT_ImportType_3_0_10
54217
+ static PyTypeObject *__Pyx_ImportType_3_0_10(PyObject *module, const char *module_name, const char *class_name,
54218
+ size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_10 check_size)
54198
54219
  {
54199
54220
  PyObject *result = 0;
54200
54221
  char warning[200];
@@ -54248,7 +54269,7 @@ static PyTypeObject *__Pyx_ImportType_3_0_7(PyObject *module, const char *module
54248
54269
  module_name, class_name, size, basicsize+itemsize);
54249
54270
  goto bad;
54250
54271
  }
54251
- if (check_size == __Pyx_ImportType_CheckSize_Error_3_0_7 &&
54272
+ if (check_size == __Pyx_ImportType_CheckSize_Error_3_0_10 &&
54252
54273
  ((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) {
54253
54274
  PyErr_Format(PyExc_ValueError,
54254
54275
  "%.200s.%.200s size changed, may indicate binary incompatibility. "
@@ -54256,7 +54277,7 @@ static PyTypeObject *__Pyx_ImportType_3_0_7(PyObject *module, const char *module
54256
54277
  module_name, class_name, size, basicsize, basicsize+itemsize);
54257
54278
  goto bad;
54258
54279
  }
54259
- else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_0_7 && (size_t)basicsize > size) {
54280
+ else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_0_10 && (size_t)basicsize > size) {
54260
54281
  PyOS_snprintf(warning, sizeof(warning),
54261
54282
  "%s.%s size changed, may indicate binary incompatibility. "
54262
54283
  "Expected %zd from C header, got %zd from PyObject",
@@ -55256,7 +55277,7 @@ static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func,
55256
55277
  default:
55257
55278
  return NULL;
55258
55279
  }
55259
- return ((_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames);
55280
+ return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames);
55260
55281
  }
55261
55282
  static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames)
55262
55283
  {
@@ -56073,7 +56094,7 @@ static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
56073
56094
  #else
56074
56095
  py_code = PyCode_NewEmpty(filename, funcname, py_line);
56075
56096
  #endif
56076
- Py_XDECREF(py_funcname); // XDECREF since it's only set on Py3 if cline
56097
+ Py_XDECREF(py_funcname);
56077
56098
  return py_code;
56078
56099
  bad:
56079
56100
  Py_XDECREF(py_funcname);
@@ -58860,9 +58881,9 @@ static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt
58860
58881
  }
58861
58882
 
58862
58883
  /* FunctionImport */
58863
- #ifndef __PYX_HAVE_RT_ImportFunction_3_0_7
58864
- #define __PYX_HAVE_RT_ImportFunction_3_0_7
58865
- static int __Pyx_ImportFunction_3_0_7(PyObject *module, const char *funcname, void (**f)(void), const char *sig) {
58884
+ #ifndef __PYX_HAVE_RT_ImportFunction_3_0_10
58885
+ #define __PYX_HAVE_RT_ImportFunction_3_0_10
58886
+ static int __Pyx_ImportFunction_3_0_10(PyObject *module, const char *funcname, void (**f)(void), const char *sig) {
58866
58887
  PyObject *d = 0;
58867
58888
  PyObject *cobj = 0;
58868
58889
  union {