biotite 0.39.0__cp310-cp310-macosx_11_0_arm64.whl → 0.41.0__cp310-cp310-macosx_11_0_arm64.whl

{biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: biotite
-Version: 0.39.0
+Version: 0.41.0
 Summary: A comprehensive library for computational molecular biology
 Author: The Biotite contributors
 License: BSD 3-Clause License
@@ -48,11 +48,11 @@ Classifier: Operating System :: Microsoft :: Windows
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: Implementation :: CPython
 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
-Requires-Python: >=3.7
+Requires-Python: >=3.10
 Description-Content-Type: text/x-rst
 License-File: LICENSE.rst
 Requires-Dist: requests >=2.12
-Requires-Dist: numpy >=1.14.5
+Requires-Dist: numpy <=2.0,>=1.14.5
 Requires-Dist: msgpack >=0.5.6
 Requires-Dist: networkx >=2.0
 Provides-Extra: test

{biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/RECORD

@@ -1,12 +1,12 @@
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-biotite-0.39.0.dist-info/WHEEL,sha256=YryPFYalc7zt-wi82wLNxE5k4S4dtsQOnz0S1sKWvLs,110
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-biotite-0.39.0.dist-info/top_level.txt,sha256=Tvj5T6Zfz3AhevTRlDRVhNC1WgPlFk-wDtSkzTgFM8w,8
-biotite-0.39.0.dist-info/METADATA,sha256=-UBZ0t86SDwoIaX7_yt2-k1inbPtiKoesN0gFDVLfUg,7145
+biotite-0.41.0.dist-info/RECORD,,
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+biotite-0.41.0.dist-info/LICENSE.rst,sha256=ZuNQuB65Dxf0rDB_5LxvA4SVQJBWxRZyvbjbvE-APWY,1534
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 biotite/copyable.py,sha256=Rmsso_e9quxWc23SBQh2M45jTT36SerwSmt3ONng04M,1972
-biotite/__init__.py,sha256=klQIUDyC3zcaYzVSTUd5vQaB-eMx5WDCoEu4fdrvLzg,524
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 biotite/visualize.py,sha256=mLME6fOGwdcUZLUzDTbwUpZokC4D1cVE6ICdtJDc0yw,9842
-biotite/file.py,sha256=flQknYLaLSlbX38D8_I3fG9DAo4D3ExeoRzweMoZMno,7335
+biotite/file.py,sha256=te0tI2Qdh9JQlwe_FgkyWIU6RG6WYgWNbAj3GF3wzh0,7429
 biotite/temp.py,sha256=AenIC7m3rrezikJDKgTEnLZigACubfsw_UcmYMGyGa8,2045
 biotite/database/error.py,sha256=oEJGj28R9VRkLt_DcsqNsf-rwHe3E2ma5uduzqAgZ1w,408
 biotite/database/__init__.py,sha256=_C25CsDE8O_770Vmk6sCK4FKlQ0A1hUhWaMRPOvkDtM,724
@@ -21,12 +21,12 @@ biotite/database/uniprot/query.py,sha256=bzJenXwN3iKLxwJT9uaB19LBam8GRYWfeBzS_Py
 biotite/database/uniprot/download.py,sha256=rWrgLrDCnItLe5fU3_oSZvYJToqWmqfffN5JvBumdyM,4378
 biotite/database/uniprot/__init__.py,sha256=Lsk5Jd-qb5167VTgN48lWSSbqpjCM-fD0XKJyxaZb7o,334
 biotite/database/pubchem/error.py,sha256=5kLtd9r3KkR9PZfTEfaRA5LRIG2K-XQKqiEBZZ0pd4g,711
-biotite/database/pubchem/query.py,sha256=odzR1G-psQnMAcWL97pj_xc9BH6sUlgru1vg4SD00Vc,26440
-biotite/database/pubchem/download.py,sha256=rio_-ykW1xAZhhWcd-U88NYrwcI1lsJNrG75PEuGRfc,10117
+biotite/database/pubchem/query.py,sha256=PBXIMhxWxIsTZQDDsnConZbm3j7GZwYqgN_ldn9bZsk,26425
+biotite/database/pubchem/download.py,sha256=gRNWiHlMMWWCDBjgsAmtvygkM3Agc8yQeuwV2VKeJtQ,9997
 biotite/database/pubchem/__init__.py,sha256=Lnk0h85FzSFBu6KAG3P5ssbGfXE2lX-EMYXWCafPF0o,668
 biotite/database/pubchem/throttle.py,sha256=RzMFaBKJVWygH2QlLQEFO_EBcN7nGxj6Sq-sAB7njvY,3534
 biotite/database/rcsb/query.py,sha256=I5eAsdsW8FT-O0cKz_71dpS-HrEe0VtauliAPQMPBSo,33065
-biotite/database/rcsb/download.py,sha256=LcuB7UnjGyra6ERPrljnrNoWxfp15ZyD7SIiQ6FBQTg,5787
+biotite/database/rcsb/download.py,sha256=A34iNIVufjUu1b21hj3jhcxIlXmUWDLt5I5jCMBOW1I,5996
 biotite/database/rcsb/__init__.py,sha256=D0aWxH2qmDycBBNtSUUQQHusOYxS1sf_4P4rJI85kyU,331
 biotite/application/util.py,sha256=KmvdyozUayuvlmGZ2QYkXeJCkqayvEmpQJDSXPL8I7w,2104
 biotite/application/localapp.py,sha256=RA6MVIn5lSOhfv62H1QP6ymkiiMvzjK3swb9JSY6xAs,9450
@@ -35,7 +35,7 @@ biotite/application/__init__.py,sha256=ZsDk_A34W4W1jrA2zlHWhXXqe2uBKQVWDMa58d0IZ
 biotite/application/application.py,sha256=6-UfFW1ssAeU6Xfd17ovjOREoa6owFIYWWDDIHVNUgE,8129
 biotite/application/msaapp.py,sha256=tAXy8OKqHProreN4zDgNGcFFC7vFGoK6YFgNLeD9QxA,12346
 biotite/application/dssp/__init__.py,sha256=CdRcAe_Uc_kGl_I0_Cn1Qk_4RsFn_n-u8SbLrklvYEM,322
-biotite/application/dssp/app.py,sha256=PLSsCMi2EuxygpDJu-_QPUj_xxg0Vr6W7mvu3K5glqw,4929
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 biotite/application/viennarna/rnaalifold.py,sha256=4petrddQWumjtUzWxjVKqategejEczthqkwMIjkPvDE,10556
 biotite/application/viennarna/util.py,sha256=mmfX6uJjJfPyc4lNx4FvbhIP2PFxVvjwxWQrEm9P7MQ,2675
 biotite/application/viennarna/__init__.py,sha256=m2obwXBnkDzRDzjrffsGdnp7YxAFz6CctsSmmg03xVI,473
@@ -57,10 +57,10 @@ biotite/application/clustalo/app.py,sha256=tPZFZ5SP1jCE1OQlTz7WzFOmdZ5B6JHTTjaCU
 biotite/application/muscle/app3.py,sha256=tm51pw2zuDcuua-an5eaD_oBGh_PBL8vdlGdfUkXLF4,8450
 biotite/application/muscle/__init__.py,sha256=UZFXceMzefsY6Y1CokOpWC2ZgWeiM8NiCHqEzLJDeQ8,337
 biotite/application/muscle/app5.py,sha256=9tbw6XISmu9CEvFPDxoXW72HnrpAPf0MZY4jH7F8jK0,4799
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-biotite/sequence/annotation.py,sha256=h8e1IJhmHXoqs8yw1Y6QwFLrGcb5XF8ewDkkxPhThXo,29786
+biotite/sequence/codec.c,sha256=BqwdDRnnC55JOHV2BZ5YbV0KufDUl0evGHUgp9sNA6o,1534101
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 biotite/sequence/sequence.py,sha256=AbOf4a3ApXUBgflzYRux2nqpd6jDCXVAByUBkt9Jroo,11911
-biotite/sequence/codec.cpython-310-darwin.so,sha256=ekUjY4-R0Kk_6l65hdSEW8JVO8yeI26FYAcMrT0zvJ8,319096
+biotite/sequence/codec.cpython-310-darwin.so,sha256=pVP7LZNWTsIrFg-83lgaGZOwxUAw6BnIDflPMvgeIbA,319096
 biotite/sequence/profile.py,sha256=LkH-jcTmxOyWMmhTgjjF7ykmQ7KlKidAdGp3X5_Wm-4,16813
 biotite/sequence/codon_tables.txt,sha256=zZLT642H4qEkwUk5g-hWh-6ZWP_bgaz70fWcxwJDWJ0,10209
 biotite/sequence/__init__.py,sha256=jwkyw2DlOVCyeZAfT5V1P-q6lZN7c7kINhNbtF2tODs,3033
@@ -70,7 +70,7 @@ biotite/sequence/search.py,sha256=er8lqF2WM4rFG3gixxgEnJ8yNHiWae--02TjJCNRo1c,31
 biotite/sequence/alphabet.py,sha256=l4iggmKPNvfauKeRRGbJWmmrzkFldljxMBpFoRG8Uks,17785
 biotite/sequence/io/__init__.py,sha256=4K13uxFWe8IpNC8yuVxjDiI7-8lmXu7qT6iMmVSqPs4,314
 biotite/sequence/io/general.py,sha256=4HIIU6VNNfOLfVqAkg_mXzmNZZlOeJWzwsChu_dTVvc,6570
-biotite/sequence/io/fasta/convert.py,sha256=xNAq43nTSIpSVTOFbW1AwOvgQPZulvTmPD1eNWpyON8,9450
+biotite/sequence/io/fasta/convert.py,sha256=saQmgRHqnhqqTmbSf3rn4_m6RcVulGEFeVK7g928rdI,9433
 biotite/sequence/io/fasta/__init__.py,sha256=rq4Pze3xj0Yj4bvh6BgNe-ZVO4yTfchpDOtlz-EGzmo,719
 biotite/sequence/io/fasta/file.py,sha256=JYTeHugajnSJ9lwSwcVgsBBEei9pf9S4LWZrM2VH0Vs,9437
 biotite/sequence/io/gff/convert.py,sha256=BnAMkQl7mVO6b2vupznhDyd5-tpbhYKstCRMmhlEmOM,4699
@@ -84,35 +84,35 @@ biotite/sequence/io/genbank/file.py,sha256=lY5LPFJU7q1mGWkE_iF8XQgBzkY_3aOFCxI9n
 biotite/sequence/io/fastq/convert.py,sha256=eluwgaDZggVNaBmyNWYioxsvcajJfqWTqTU12BP__yo,3767
 biotite/sequence/io/fastq/__init__.py,sha256=B_X3WAWxlHkYWJAO7Aeb22RWtsx79y7s6TnmcIP4IGQ,587
 biotite/sequence/io/fastq/file.py,sha256=a_tk-RyqcJn0ioRe68V6ET3g8if3i5L_Dg0HAjrLw14,19115
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 biotite/sequence/align/matrix.py,sha256=fYfhqeuMZJEYJsaTFgbRLnu3BBFx97UANfIhGxHT7l0,13287
 biotite/sequence/align/primes.txt,sha256=7pKfLGN1vjYl_KJ3y5uuo8np_5DDUH52UAkhb3fJfWE,10140
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 biotite/sequence/align/alignment.py,sha256=MF_3R2MMjuwwvG7j4pybQjdPCTk2fAwg_4gW-muzKfA,21338
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 biotite/sequence/align/buckets.py,sha256=6vIIMRT3h3t8PWaJxT3TjtA_fKtYyalBv-E4OdDOy00,2422
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 biotite/sequence/align/matrix_data/PAM370.mat,sha256=ZD8BpkVrVK22_oLSXZb9d_kzNDfic_i0eVT1fUNkyBk,2068
 biotite/sequence/align/matrix_data/PAM210.mat,sha256=UfUmaJ09ID11GUzuNeK7aUzgZTW1iJLizADnD0qT2BI,2067
 biotite/sequence/align/matrix_data/BLOSUM30.mat,sha256=j6FWyeTXvfpSR0ZGecI18MCATcjM_FTJ2XGoEjWg3Qg,2122
@@ -228,106 +228,112 @@ biotite/sequence/graphics/color_schemes/jalview_prop_strand.json,sha256=83GsLW_L
 biotite/sequence/graphics/color_schemes/autumn.json,sha256=usp-Y70tk39LCJV64vi7t3wd0pcf7kOjEE8dZhAbryM,842
 biotite/sequence/graphics/color_schemes/jalview_zappo.json,sha256=V0IJ-GsT8G8-J9CILWaiY3QkB35wYEq2kbWEDqYjm-4,701
 biotite/sequence/graphics/color_schemes/clustalx_dna.json,sha256=xkNRgGj_ersYNx8eSDAnI1HQalGiAWHw97tO_pmfyNE,249
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 biotite/sequence/phylo/__init__.py,sha256=BNU2f9wzpkX2VngUFux7A7CvnBkzU78ziMXLLVNsJuA,1260
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-biotite/structure/info/bonds.py,sha256=ugZitgA4Ajj3RcUrum4H_ZuqVcotr2-Df5vxkdVdPvo,6089
-biotite/structure/info/masses.py,sha256=XKRyNxCZi4kESCXi3w5o1EYrhoPUSkIfkmR73lWL6v4,4546
-biotite/structure/info/carbohydrates.json,sha256=JfzMX_FwOBhzH3E0XEvJVjCP80d-bEjOiIFtgJpNd9U,8962
-biotite/structure/info/nucleotides.py,sha256=exs3qlk_CB65EXvoCzDtL2ZdF2s5QboT3lJuCuMabjU,1274
-biotite/structure/info/atoms.py,sha256=y_N-4O6QYDyU2FEFlEDjGSRQup6zByDgguBpbyoq8_E,3490
-biotite/structure/info/link_types.msgpack,sha256=EO5H3hQFNuLs1tHft9zZf3HpN0-3O_XM3QA3HIY73PA,582272
-biotite/structure/info/residue_names.msgpack,sha256=p8uLuHBVko6pbq-GDjqLIZMtc7_XEY1NUFZQt4YL-yA,2952002
-biotite/structure/info/intra_bonds.msgpack,sha256=gdf7MGumNkEg6ToZnyI2_zL6z6gLVyi6k0kP5eFaDIo,16338340
+biotite/structure/info/standardize.py,sha256=AaYn7mx6Y6NylkeOg1kIpyNoI-KrWbGSXXu_GEcSAZw,7772
+biotite/structure/info/bonds.py,sha256=YDcRf480_M_Sl7j3uoZ7aJZbpfAg4n6tyVoD3ijFtNk,4651
+biotite/structure/info/masses.py,sha256=dnZbg4k_89SuTwFUulyTKAL6Mnk4POPMIVhJLl5xswA,4489
+biotite/structure/info/atoms.py,sha256=qPCAgGF1Rd6e7mIzyBmXF1zMZy6pgX8E3wDeDvC1asU,2568
+biotite/structure/info/ccd.py,sha256=26BnKJEGH6Bhmvkll_ev6HSCIi0hNx_cs_N9hqNXP-4,2754
+biotite/structure/info/ccd/components.bcif,sha256=xgvErxils9GNg5s0sGI33B7w4lWeUBZRksPer3japnE,35649254
+biotite/structure/info/ccd/amino_acids.txt,sha256=RUyolncqbsplkY2hlajjOSciigyZEYL1GCx_f63jXx4,6669
+biotite/structure/info/ccd/README.rst,sha256=sfFRGesjpATIp5S8kiEV7cr-Jb51fWLGT4KypmzsoPM,342
+biotite/structure/info/ccd/carbohydrates.txt,sha256=bh5Vc84tETB-FKUm6H1brBN6zM5a2zzzwuWyb0MXaLA,4544
+biotite/structure/info/ccd/nucleotides.txt,sha256=Q7Zjz45BAO6c2QDAgvYdKtWAqmjQxy2NQ6r-bsZRqv4,3136
 biotite/structure/graphics/__init__.py,sha256=YwMT8-c2DjrkcwyK6jPeDtAKxQda0OhElnwk8J0y3Hc,353
 biotite/structure/graphics/rna.py,sha256=bhIHoB_9sFuZPrHQ8qQnToRiTCfgQ7JLVNIdsQVvkw8,11888
 biotite/structure/graphics/atoms.py,sha256=nMhbmnjytxEDkxTTm2wHM2dObSw3izjvRbqssCW876E,8171

{biotite-0.39.0.dist-info → biotite-0.41.0.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.42.0)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: false
 Tag: cp310-cp310-macosx_11_0_arm64