biotite 0.38.0__cp311-cp311-win_amd64.whl → 0.40.0__cp311-cp311-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- biotite/__init__.py +3 -3
- biotite/application/application.py +33 -28
- biotite/application/dssp/app.py +18 -18
- biotite/application/sra/__init__.py +5 -0
- biotite/application/sra/app.py +337 -55
- biotite/database/entrez/__init__.py +2 -1
- biotite/database/entrez/check.py +14 -3
- biotite/database/entrez/download.py +20 -13
- biotite/database/entrez/key.py +44 -0
- biotite/database/entrez/query.py +38 -34
- biotite/database/pubchem/query.py +44 -44
- biotite/database/rcsb/download.py +19 -14
- biotite/database/rcsb/query.py +46 -46
- biotite/sequence/align/__init__.py +5 -1
- biotite/sequence/align/banded.c +1408 -1025
- biotite/sequence/align/banded.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/buckets.py +69 -0
- biotite/sequence/align/cigar.py +389 -0
- biotite/sequence/align/kmeralphabet.c +3220 -2850
- biotite/sequence/align/kmeralphabet.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/kmersimilarity.c +713 -663
- biotite/sequence/align/kmersimilarity.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/kmertable.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/kmertable.cpp +68398 -0
- biotite/sequence/align/localgapped.c +1507 -1074
- biotite/sequence/align/localgapped.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/localungapped.c +1143 -833
- biotite/sequence/align/localungapped.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/multiple.c +1569 -1092
- biotite/sequence/align/multiple.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/pairwise.c +1612 -1212
- biotite/sequence/align/pairwise.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/permutation.c +33259 -0
- biotite/sequence/align/permutation.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/primes.txt +821 -0
- biotite/sequence/align/{kmertable.c → selector.c} +9129 -16497
- biotite/sequence/align/selector.cp311-win_amd64.pyd +0 -0
- biotite/sequence/align/tracetable.c +685 -646
- biotite/sequence/align/tracetable.cp311-win_amd64.pyd +0 -0
- biotite/sequence/codec.c +1159 -841
- biotite/sequence/codec.cp311-win_amd64.pyd +0 -0
- biotite/sequence/graphics/alignment.py +212 -2
- biotite/sequence/io/genbank/annotation.py +11 -11
- biotite/sequence/phylo/nj.c +684 -636
- biotite/sequence/phylo/nj.cp311-win_amd64.pyd +0 -0
- biotite/sequence/phylo/tree.c +970 -673
- biotite/sequence/phylo/tree.cp311-win_amd64.pyd +0 -0
- biotite/sequence/phylo/upgma.c +672 -626
- biotite/sequence/phylo/upgma.cp311-win_amd64.pyd +0 -0
- biotite/structure/__init__.py +1 -1
- biotite/structure/atoms.py +1 -1
- biotite/structure/basepairs.py +7 -12
- biotite/structure/bonds.c +3861 -3749
- biotite/structure/bonds.cp311-win_amd64.pyd +0 -0
- biotite/structure/celllist.c +727 -707
- biotite/structure/celllist.cp311-win_amd64.pyd +0 -0
- biotite/structure/charges.c +1561 -1560
- biotite/structure/charges.cp311-win_amd64.pyd +0 -0
- biotite/structure/filter.py +30 -37
- biotite/structure/info/__init__.py +5 -8
- biotite/structure/info/atoms.py +25 -67
- biotite/structure/info/bonds.py +46 -100
- biotite/structure/info/ccd/README.rst +8 -0
- biotite/structure/info/ccd/amino_acids.txt +1646 -0
- biotite/structure/info/ccd/carbohydrates.txt +1133 -0
- biotite/structure/info/ccd/components.bcif +0 -0
- biotite/structure/info/ccd/nucleotides.txt +797 -0
- biotite/structure/info/ccd.py +95 -0
- biotite/structure/info/groups.py +90 -0
- biotite/structure/info/masses.py +21 -20
- biotite/structure/info/misc.py +11 -22
- biotite/structure/info/standardize.py +17 -12
- biotite/structure/io/__init__.py +2 -4
- biotite/structure/io/ctab.py +1 -1
- biotite/structure/io/general.py +37 -43
- biotite/structure/io/mmtf/__init__.py +3 -0
- biotite/structure/io/mmtf/convertarray.c +528 -365
- biotite/structure/io/mmtf/convertarray.cp311-win_amd64.pyd +0 -0
- biotite/structure/io/mmtf/convertfile.c +725 -676
- biotite/structure/io/mmtf/convertfile.cp311-win_amd64.pyd +0 -0
- biotite/structure/io/mmtf/decode.c +1070 -754
- biotite/structure/io/mmtf/decode.cp311-win_amd64.pyd +0 -0
- biotite/structure/io/mmtf/encode.c +727 -677
- biotite/structure/io/mmtf/encode.cp311-win_amd64.pyd +0 -0
- biotite/structure/io/mmtf/file.py +34 -26
- biotite/structure/io/npz/__init__.py +3 -0
- biotite/structure/io/npz/file.py +21 -18
- biotite/structure/io/pdb/__init__.py +3 -3
- biotite/structure/io/pdb/file.py +72 -70
- biotite/structure/io/pdb/hybrid36.c +540 -478
- biotite/structure/io/pdb/hybrid36.cp311-win_amd64.pyd +0 -0
- biotite/structure/io/pdbqt/file.py +82 -68
- biotite/structure/io/pdbx/__init__.py +13 -6
- biotite/structure/io/pdbx/bcif.py +649 -0
- biotite/structure/io/pdbx/cif.py +1028 -0
- biotite/structure/io/pdbx/component.py +243 -0
- biotite/structure/io/pdbx/convert.py +707 -359
- biotite/structure/io/pdbx/encoding.c +112813 -0
- biotite/structure/io/pdbx/encoding.cp311-win_amd64.pyd +0 -0
- biotite/structure/io/pdbx/error.py +14 -0
- biotite/structure/io/pdbx/legacy.py +267 -0
- biotite/structure/molecules.py +151 -151
- biotite/structure/residues.py +40 -40
- biotite/structure/sasa.c +713 -644
- biotite/structure/sasa.cp311-win_amd64.pyd +0 -0
- biotite/structure/superimpose.py +158 -115
- biotite/visualize.py +9 -11
- {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/METADATA +2 -2
- {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/RECORD +112 -102
- {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/WHEEL +1 -1
- biotite/structure/info/amino_acids.json +0 -1556
- biotite/structure/info/amino_acids.py +0 -42
- biotite/structure/info/carbohydrates.json +0 -1122
- biotite/structure/info/carbohydrates.py +0 -39
- biotite/structure/info/intra_bonds.msgpack +0 -0
- biotite/structure/info/link_types.msgpack +0 -1
- biotite/structure/info/nucleotides.json +0 -772
- biotite/structure/info/nucleotides.py +0 -39
- biotite/structure/info/residue_masses.msgpack +0 -0
- biotite/structure/info/residue_names.msgpack +0 -3
- biotite/structure/info/residues.msgpack +0 -0
- biotite/structure/io/pdbx/file.py +0 -652
- {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/LICENSE.rst +0 -0
- {biotite-0.38.0.dist-info → biotite-0.40.0.dist-info}/top_level.txt +0 -0
biotite/sequence/phylo/tree.c
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@@ -756,6 +793,31 @@ END: Cython Metadata */
|
|
|
756
793
|
#define __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET 0
|
|
757
794
|
#define __Pyx_PyVectorcall_NARGS(n) ((Py_ssize_t)(n))
|
|
758
795
|
#endif
|
|
796
|
+
#if PY_MAJOR_VERSION >= 0x030900B1
|
|
797
|
+
#define __Pyx_PyCFunction_CheckExact(func) PyCFunction_CheckExact(func)
|
|
798
|
+
#else
|
|
799
|
+
#define __Pyx_PyCFunction_CheckExact(func) PyCFunction_Check(func)
|
|
800
|
+
#endif
|
|
801
|
+
#define __Pyx_CyOrPyCFunction_Check(func) PyCFunction_Check(func)
|
|
802
|
+
#if CYTHON_COMPILING_IN_CPYTHON
|
|
803
|
+
#define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) (((PyCFunctionObject*)(func))->m_ml->ml_meth)
|
|
804
|
+
#elif !CYTHON_COMPILING_IN_LIMITED_API
|
|
805
|
+
#define __Pyx_CyOrPyCFunction_GET_FUNCTION(func) PyCFunction_GET_FUNCTION(func)
|
|
806
|
+
#endif
|
|
807
|
+
#if CYTHON_COMPILING_IN_CPYTHON
|
|
808
|
+
#define __Pyx_CyOrPyCFunction_GET_FLAGS(func) (((PyCFunctionObject*)(func))->m_ml->ml_flags)
|
|
809
|
+
static CYTHON_INLINE PyObject* __Pyx_CyOrPyCFunction_GET_SELF(PyObject *func) {
|
|
810
|
+
return (__Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_STATIC) ? NULL : ((PyCFunctionObject*)func)->m_self;
|
|
811
|
+
}
|
|
812
|
+
#endif
|
|
813
|
+
static CYTHON_INLINE int __Pyx__IsSameCFunction(PyObject *func, void *cfunc) {
|
|
814
|
+
#if CYTHON_COMPILING_IN_LIMITED_API
|
|
815
|
+
return PyCFunction_Check(func) && PyCFunction_GetFunction(func) == (PyCFunction) cfunc;
|
|
816
|
+
#else
|
|
817
|
+
return PyCFunction_Check(func) && PyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc;
|
|
818
|
+
#endif
|
|
819
|
+
}
|
|
820
|
+
#define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCFunction(func, cfunc)
|
|
759
821
|
#if __PYX_LIMITED_VERSION_HEX < 0x030900B1
|
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760
822
|
#define __Pyx_PyType_FromModuleAndSpec(m, s, b) ((void)m, PyType_FromSpecWithBases(s, b))
|
|
761
823
|
typedef PyObject *(*__Pyx_PyCMethod)(PyObject *, PyTypeObject *, PyObject *const *, size_t, PyObject *);
|
|
@@ -782,6 +844,8 @@ END: Cython Metadata */
|
|
|
782
844
|
#define __Pyx_PyThreadState_Current PyThreadState_Get()
|
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783
845
|
#elif !CYTHON_FAST_THREAD_STATE
|
|
784
846
|
#define __Pyx_PyThreadState_Current PyThreadState_GET()
|
|
847
|
+
#elif PY_VERSION_HEX >= 0x030d00A1
|
|
848
|
+
#define __Pyx_PyThreadState_Current PyThreadState_GetUnchecked()
|
|
785
849
|
#elif PY_VERSION_HEX >= 0x03060000
|
|
786
850
|
#define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
|
|
787
851
|
#elif PY_VERSION_HEX >= 0x03000000
|
|
@@ -857,7 +921,7 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
|
|
|
857
921
|
}
|
|
858
922
|
#endif
|
|
859
923
|
#endif
|
|
860
|
-
#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
|
|
924
|
+
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030d0000 || defined(_PyDict_NewPresized)
|
|
861
925
|
#define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
|
|
862
926
|
#else
|
|
863
927
|
#define __Pyx_PyDict_NewPresized(n) PyDict_New()
|
|
@@ -869,7 +933,7 @@ static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
|
|
|
869
933
|
#define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
|
|
870
934
|
#define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
|
|
871
935
|
#endif
|
|
872
|
-
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B4 && CYTHON_USE_UNICODE_INTERNALS
|
|
936
|
+
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX > 0x030600B4 && PY_VERSION_HEX < 0x030d0000 && CYTHON_USE_UNICODE_INTERNALS
|
|
873
937
|
#define __Pyx_PyDict_GetItemStrWithError(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
|
|
874
938
|
static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStr(PyObject *dict, PyObject *name) {
|
|
875
939
|
PyObject *res = __Pyx_PyDict_GetItemStrWithError(dict, name);
|
|
@@ -913,7 +977,7 @@ static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict,
|
|
|
913
977
|
#endif
|
|
914
978
|
#if CYTHON_USE_TYPE_SPECS && PY_VERSION_HEX >= 0x03080000
|
|
915
979
|
#define __Pyx_PyHeapTypeObject_GC_Del(obj) {\
|
|
916
|
-
PyTypeObject *type = Py_TYPE(obj);\
|
|
980
|
+
PyTypeObject *type = Py_TYPE((PyObject*)obj);\
|
|
917
981
|
assert(__Pyx_PyType_HasFeature(type, Py_TPFLAGS_HEAPTYPE));\
|
|
918
982
|
PyObject_GC_Del(obj);\
|
|
919
983
|
Py_DECREF(type);\
|
|
@@ -1057,6 +1121,15 @@ static CYTHON_INLINE PyObject * __Pyx_PyDict_GetItemStrWithError(PyObject *dict,
|
|
|
1057
1121
|
#define __Pyx_PyBytes_GET_SIZE(o) PyBytes_Size(o)
|
|
1058
1122
|
#define __Pyx_PyByteArray_GET_SIZE(o) PyByteArray_Size(o)
|
|
1059
1123
|
#endif
|
|
1124
|
+
#if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1
|
|
1125
|
+
#define __Pyx_PyImport_AddModuleRef(name) PyImport_AddModuleRef(name)
|
|
1126
|
+
#else
|
|
1127
|
+
static CYTHON_INLINE PyObject *__Pyx_PyImport_AddModuleRef(const char *name) {
|
|
1128
|
+
PyObject *module = PyImport_AddModule(name);
|
|
1129
|
+
Py_XINCREF(module);
|
|
1130
|
+
return module;
|
|
1131
|
+
}
|
|
1132
|
+
#endif
|
|
1060
1133
|
#if PY_MAJOR_VERSION >= 3
|
|
1061
1134
|
#define PyIntObject PyLongObject
|
|
1062
1135
|
#define PyInt_Type PyLong_Type
|
|
@@ -1135,7 +1208,7 @@ static CYTHON_INLINE float __PYX_NAN() {
|
|
|
1135
1208
|
#endif
|
|
1136
1209
|
|
|
1137
1210
|
#define __PYX_MARK_ERR_POS(f_index, lineno) \
|
|
1138
|
-
{ __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__;
|
|
1211
|
+
{ __pyx_filename = __pyx_f[f_index]; (void)__pyx_filename; __pyx_lineno = lineno; (void)__pyx_lineno; __pyx_clineno = __LINE__; (void)__pyx_clineno; }
|
|
1139
1212
|
#define __PYX_ERR(f_index, lineno, Ln_error) \
|
|
1140
1213
|
{ __PYX_MARK_ERR_POS(f_index, lineno) goto Ln_error; }
|
|
1141
1214
|
|
|
@@ -1217,9 +1290,10 @@ static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
|
|
|
1217
1290
|
#else
|
|
1218
1291
|
#define __Pyx_sst_abs(value) ((value<0) ? -value : value)
|
|
1219
1292
|
#endif
|
|
1293
|
+
static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s);
|
|
1220
1294
|
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
|
|
1221
1295
|
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
|
|
1222
|
-
|
|
1296
|
+
static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char*);
|
|
1223
1297
|
#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
|
|
1224
1298
|
#define __Pyx_PyBytes_FromString PyBytes_FromString
|
|
1225
1299
|
#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
|
|
@@ -1247,24 +1321,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
|
|
|
1247
1321
|
#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
|
|
1248
1322
|
#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
|
|
1249
1323
|
#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
|
|
1250
|
-
#if CYTHON_COMPILING_IN_LIMITED_API
|
|
1251
|
-
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const wchar_t *u)
|
|
1252
|
-
{
|
|
1253
|
-
const wchar_t *u_end = u;
|
|
1254
|
-
while (*u_end++) ;
|
|
1255
|
-
return (size_t)(u_end - u - 1);
|
|
1256
|
-
}
|
|
1257
|
-
#else
|
|
1258
|
-
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
|
|
1259
|
-
{
|
|
1260
|
-
const Py_UNICODE *u_end = u;
|
|
1261
|
-
while (*u_end++) ;
|
|
1262
|
-
return (size_t)(u_end - u - 1);
|
|
1263
|
-
}
|
|
1264
|
-
#endif
|
|
1265
1324
|
#define __Pyx_PyUnicode_FromOrdinal(o) PyUnicode_FromOrdinal((int)o)
|
|
1266
|
-
#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
|
|
1267
|
-
#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
|
|
1268
1325
|
#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
|
|
1269
1326
|
#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
|
|
1270
1327
|
#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
|
|
@@ -1314,7 +1371,7 @@ static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*);
|
|
|
1314
1371
|
#endif
|
|
1315
1372
|
typedef Py_ssize_t __Pyx_compact_pylong;
|
|
1316
1373
|
typedef size_t __Pyx_compact_upylong;
|
|
1317
|
-
#else
|
|
1374
|
+
#else
|
|
1318
1375
|
#define __Pyx_PyLong_IsNeg(x) (Py_SIZE(x) < 0)
|
|
1319
1376
|
#define __Pyx_PyLong_IsNonNeg(x) (Py_SIZE(x) >= 0)
|
|
1320
1377
|
#define __Pyx_PyLong_IsZero(x) (Py_SIZE(x) == 0)
|
|
@@ -1335,6 +1392,7 @@ static CYTHON_INLINE Py_hash_t __Pyx_PyIndex_AsHash_t(PyObject*);
|
|
|
1335
1392
|
#endif
|
|
1336
1393
|
#endif
|
|
1337
1394
|
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
|
|
1395
|
+
#include <string.h>
|
|
1338
1396
|
static int __Pyx_sys_getdefaultencoding_not_ascii;
|
|
1339
1397
|
static int __Pyx_init_sys_getdefaultencoding_params(void) {
|
|
1340
1398
|
PyObject* sys;
|
|
@@ -1385,6 +1443,7 @@ bad:
|
|
|
1385
1443
|
#else
|
|
1386
1444
|
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
|
|
1387
1445
|
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
|
|
1446
|
+
#include <string.h>
|
|
1388
1447
|
static char* __PYX_DEFAULT_STRING_ENCODING;
|
|
1389
1448
|
static int __Pyx_init_sys_getdefaultencoding_params(void) {
|
|
1390
1449
|
PyObject* sys;
|
|
@@ -1432,7 +1491,7 @@ static const char *__pyx_filename;
|
|
|
1432
1491
|
#if !defined(CYTHON_CCOMPLEX)
|
|
1433
1492
|
#if defined(__cplusplus)
|
|
1434
1493
|
#define CYTHON_CCOMPLEX 1
|
|
1435
|
-
#elif (defined(_Complex_I) && !defined(_MSC_VER)) || ((defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) && !defined(__STDC_NO_COMPLEX__))
|
|
1494
|
+
#elif (defined(_Complex_I) && !defined(_MSC_VER)) || ((defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) && !defined(__STDC_NO_COMPLEX__) && !defined(_MSC_VER))
|
|
1436
1495
|
#define CYTHON_CCOMPLEX 1
|
|
1437
1496
|
#else
|
|
1438
1497
|
#define CYTHON_CCOMPLEX 0
|
|
@@ -1459,9 +1518,14 @@ static const char *__pyx_f[] = {
|
|
|
1459
1518
|
"type.pxd",
|
|
1460
1519
|
};
|
|
1461
1520
|
/* #### Code section: utility_code_proto_before_types ### */
|
|
1521
|
+
/* ForceInitThreads.proto */
|
|
1522
|
+
#ifndef __PYX_FORCE_INIT_THREADS
|
|
1523
|
+
#define __PYX_FORCE_INIT_THREADS 0
|
|
1524
|
+
#endif
|
|
1525
|
+
|
|
1462
1526
|
/* #### Code section: numeric_typedefs ### */
|
|
1463
1527
|
|
|
1464
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1528
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":731
|
|
1465
1529
|
* # in Cython to enable them only on the right systems.
|
|
1466
1530
|
*
|
|
1467
1531
|
* ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
|
|
@@ -1470,7 +1534,7 @@ static const char *__pyx_f[] = {
|
|
|
1470
1534
|
*/
|
|
1471
1535
|
typedef npy_int8 __pyx_t_5numpy_int8_t;
|
|
1472
1536
|
|
|
1473
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1537
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":732
|
|
1474
1538
|
*
|
|
1475
1539
|
* ctypedef npy_int8 int8_t
|
|
1476
1540
|
* ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
|
|
@@ -1479,7 +1543,7 @@ typedef npy_int8 __pyx_t_5numpy_int8_t;
|
|
|
1479
1543
|
*/
|
|
1480
1544
|
typedef npy_int16 __pyx_t_5numpy_int16_t;
|
|
1481
1545
|
|
|
1482
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1546
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":733
|
|
1483
1547
|
* ctypedef npy_int8 int8_t
|
|
1484
1548
|
* ctypedef npy_int16 int16_t
|
|
1485
1549
|
* ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
|
|
@@ -1488,7 +1552,7 @@ typedef npy_int16 __pyx_t_5numpy_int16_t;
|
|
|
1488
1552
|
*/
|
|
1489
1553
|
typedef npy_int32 __pyx_t_5numpy_int32_t;
|
|
1490
1554
|
|
|
1491
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1555
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":734
|
|
1492
1556
|
* ctypedef npy_int16 int16_t
|
|
1493
1557
|
* ctypedef npy_int32 int32_t
|
|
1494
1558
|
* ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
|
|
@@ -1497,7 +1561,7 @@ typedef npy_int32 __pyx_t_5numpy_int32_t;
|
|
|
1497
1561
|
*/
|
|
1498
1562
|
typedef npy_int64 __pyx_t_5numpy_int64_t;
|
|
1499
1563
|
|
|
1500
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1564
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":738
|
|
1501
1565
|
* #ctypedef npy_int128 int128_t
|
|
1502
1566
|
*
|
|
1503
1567
|
* ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
|
|
@@ -1506,7 +1570,7 @@ typedef npy_int64 __pyx_t_5numpy_int64_t;
|
|
|
1506
1570
|
*/
|
|
1507
1571
|
typedef npy_uint8 __pyx_t_5numpy_uint8_t;
|
|
1508
1572
|
|
|
1509
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1573
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":739
|
|
1510
1574
|
*
|
|
1511
1575
|
* ctypedef npy_uint8 uint8_t
|
|
1512
1576
|
* ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
|
|
@@ -1515,7 +1579,7 @@ typedef npy_uint8 __pyx_t_5numpy_uint8_t;
|
|
|
1515
1579
|
*/
|
|
1516
1580
|
typedef npy_uint16 __pyx_t_5numpy_uint16_t;
|
|
1517
1581
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":740
|
|
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|
* ctypedef npy_uint8 uint8_t
|
|
1520
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|
* ctypedef npy_uint16 uint16_t
|
|
1521
1585
|
* ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
|
|
@@ -1524,7 +1588,7 @@ typedef npy_uint16 __pyx_t_5numpy_uint16_t;
|
|
|
1524
1588
|
*/
|
|
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1589
|
typedef npy_uint32 __pyx_t_5numpy_uint32_t;
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":741
|
|
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|
* ctypedef npy_uint16 uint16_t
|
|
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|
* ctypedef npy_uint32 uint32_t
|
|
1530
1594
|
* ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
|
|
@@ -1533,7 +1597,7 @@ typedef npy_uint32 __pyx_t_5numpy_uint32_t;
|
|
|
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|
*/
|
|
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|
typedef npy_uint64 __pyx_t_5numpy_uint64_t;
|
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|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":745
|
|
1537
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|
* #ctypedef npy_uint128 uint128_t
|
|
1538
1602
|
*
|
|
1539
1603
|
* ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
|
|
@@ -1542,7 +1606,7 @@ typedef npy_uint64 __pyx_t_5numpy_uint64_t;
|
|
|
1542
1606
|
*/
|
|
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|
typedef npy_float32 __pyx_t_5numpy_float32_t;
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":746
|
|
1546
1610
|
*
|
|
1547
1611
|
* ctypedef npy_float32 float32_t
|
|
1548
1612
|
* ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
|
|
@@ -1551,7 +1615,7 @@ typedef npy_float32 __pyx_t_5numpy_float32_t;
|
|
|
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1615
|
*/
|
|
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|
typedef npy_float64 __pyx_t_5numpy_float64_t;
|
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|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":755
|
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1555
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|
* # The int types are mapped a bit surprising --
|
|
1556
1620
|
* # numpy.int corresponds to 'l' and numpy.long to 'q'
|
|
1557
1621
|
* ctypedef npy_long int_t # <<<<<<<<<<<<<<
|
|
@@ -1560,7 +1624,7 @@ typedef npy_float64 __pyx_t_5numpy_float64_t;
|
|
|
1560
1624
|
*/
|
|
1561
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|
typedef npy_long __pyx_t_5numpy_int_t;
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":756
|
|
1564
1628
|
* # numpy.int corresponds to 'l' and numpy.long to 'q'
|
|
1565
1629
|
* ctypedef npy_long int_t
|
|
1566
1630
|
* ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
|
|
@@ -1569,7 +1633,7 @@ typedef npy_long __pyx_t_5numpy_int_t;
|
|
|
1569
1633
|
*/
|
|
1570
1634
|
typedef npy_longlong __pyx_t_5numpy_long_t;
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":757
|
|
1573
1637
|
* ctypedef npy_long int_t
|
|
1574
1638
|
* ctypedef npy_longlong long_t
|
|
1575
1639
|
* ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
|
|
@@ -1578,7 +1642,7 @@ typedef npy_longlong __pyx_t_5numpy_long_t;
|
|
|
1578
1642
|
*/
|
|
1579
1643
|
typedef npy_longlong __pyx_t_5numpy_longlong_t;
|
|
1580
1644
|
|
|
1581
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1645
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":759
|
|
1582
1646
|
* ctypedef npy_longlong longlong_t
|
|
1583
1647
|
*
|
|
1584
1648
|
* ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
|
|
@@ -1587,7 +1651,7 @@ typedef npy_longlong __pyx_t_5numpy_longlong_t;
|
|
|
1587
1651
|
*/
|
|
1588
1652
|
typedef npy_ulong __pyx_t_5numpy_uint_t;
|
|
1589
1653
|
|
|
1590
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1654
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":760
|
|
1591
1655
|
*
|
|
1592
1656
|
* ctypedef npy_ulong uint_t
|
|
1593
1657
|
* ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
|
|
@@ -1596,7 +1660,7 @@ typedef npy_ulong __pyx_t_5numpy_uint_t;
|
|
|
1596
1660
|
*/
|
|
1597
1661
|
typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
|
|
1598
1662
|
|
|
1599
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1663
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":761
|
|
1600
1664
|
* ctypedef npy_ulong uint_t
|
|
1601
1665
|
* ctypedef npy_ulonglong ulong_t
|
|
1602
1666
|
* ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
|
|
@@ -1605,7 +1669,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
|
|
|
1605
1669
|
*/
|
|
1606
1670
|
typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
|
|
1607
1671
|
|
|
1608
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1672
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":763
|
|
1609
1673
|
* ctypedef npy_ulonglong ulonglong_t
|
|
1610
1674
|
*
|
|
1611
1675
|
* ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
|
|
@@ -1614,7 +1678,7 @@ typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
|
|
|
1614
1678
|
*/
|
|
1615
1679
|
typedef npy_intp __pyx_t_5numpy_intp_t;
|
|
1616
1680
|
|
|
1617
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1681
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":764
|
|
1618
1682
|
*
|
|
1619
1683
|
* ctypedef npy_intp intp_t
|
|
1620
1684
|
* ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
|
|
@@ -1623,7 +1687,7 @@ typedef npy_intp __pyx_t_5numpy_intp_t;
|
|
|
1623
1687
|
*/
|
|
1624
1688
|
typedef npy_uintp __pyx_t_5numpy_uintp_t;
|
|
1625
1689
|
|
|
1626
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1690
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":766
|
|
1627
1691
|
* ctypedef npy_uintp uintp_t
|
|
1628
1692
|
*
|
|
1629
1693
|
* ctypedef npy_double float_t # <<<<<<<<<<<<<<
|
|
@@ -1632,7 +1696,7 @@ typedef npy_uintp __pyx_t_5numpy_uintp_t;
|
|
|
1632
1696
|
*/
|
|
1633
1697
|
typedef npy_double __pyx_t_5numpy_float_t;
|
|
1634
1698
|
|
|
1635
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1699
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":767
|
|
1636
1700
|
*
|
|
1637
1701
|
* ctypedef npy_double float_t
|
|
1638
1702
|
* ctypedef npy_double double_t # <<<<<<<<<<<<<<
|
|
@@ -1641,7 +1705,7 @@ typedef npy_double __pyx_t_5numpy_float_t;
|
|
|
1641
1705
|
*/
|
|
1642
1706
|
typedef npy_double __pyx_t_5numpy_double_t;
|
|
1643
1707
|
|
|
1644
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1708
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":768
|
|
1645
1709
|
* ctypedef npy_double float_t
|
|
1646
1710
|
* ctypedef npy_double double_t
|
|
1647
1711
|
* ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
|
|
@@ -1681,7 +1745,7 @@ struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode;
|
|
|
1681
1745
|
struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph;
|
|
1682
1746
|
struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr;
|
|
1683
1747
|
|
|
1684
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1748
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":770
|
|
1685
1749
|
* ctypedef npy_longdouble longdouble_t
|
|
1686
1750
|
*
|
|
1687
1751
|
* ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
|
|
@@ -1690,7 +1754,7 @@ struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr;
|
|
|
1690
1754
|
*/
|
|
1691
1755
|
typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
|
|
1692
1756
|
|
|
1693
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1757
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":771
|
|
1694
1758
|
*
|
|
1695
1759
|
* ctypedef npy_cfloat cfloat_t
|
|
1696
1760
|
* ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
|
|
@@ -1699,7 +1763,7 @@ typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
|
|
|
1699
1763
|
*/
|
|
1700
1764
|
typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
|
|
1701
1765
|
|
|
1702
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1766
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":772
|
|
1703
1767
|
* ctypedef npy_cfloat cfloat_t
|
|
1704
1768
|
* ctypedef npy_cdouble cdouble_t
|
|
1705
1769
|
* ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
|
|
@@ -1708,7 +1772,7 @@ typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
|
|
|
1708
1772
|
*/
|
|
1709
1773
|
typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
|
|
1710
1774
|
|
|
1711
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
1775
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":774
|
|
1712
1776
|
* ctypedef npy_clongdouble clongdouble_t
|
|
1713
1777
|
*
|
|
1714
1778
|
* ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
|
|
@@ -1970,8 +2034,8 @@ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int
|
|
|
1970
2034
|
#define __Pyx_Arg_NewRef_VARARGS(arg) __Pyx_NewRef(arg)
|
|
1971
2035
|
#define __Pyx_Arg_XDECREF_VARARGS(arg) Py_XDECREF(arg)
|
|
1972
2036
|
#else
|
|
1973
|
-
#define __Pyx_Arg_NewRef_VARARGS(arg) arg
|
|
1974
|
-
#define __Pyx_Arg_XDECREF_VARARGS(arg)
|
|
2037
|
+
#define __Pyx_Arg_NewRef_VARARGS(arg) arg
|
|
2038
|
+
#define __Pyx_Arg_XDECREF_VARARGS(arg)
|
|
1975
2039
|
#endif
|
|
1976
2040
|
#define __Pyx_NumKwargs_VARARGS(kwds) PyDict_Size(kwds)
|
|
1977
2041
|
#define __Pyx_KwValues_VARARGS(args, nargs) NULL
|
|
@@ -1982,9 +2046,14 @@ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int
|
|
|
1982
2046
|
#define __Pyx_NumKwargs_FASTCALL(kwds) PyTuple_GET_SIZE(kwds)
|
|
1983
2047
|
#define __Pyx_KwValues_FASTCALL(args, nargs) ((args) + (nargs))
|
|
1984
2048
|
static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues, PyObject *s);
|
|
2049
|
+
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000
|
|
2050
|
+
CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues);
|
|
2051
|
+
#else
|
|
1985
2052
|
#define __Pyx_KwargsAsDict_FASTCALL(kw, kwvalues) _PyStack_AsDict(kwvalues, kw)
|
|
1986
|
-
|
|
1987
|
-
#define
|
|
2053
|
+
#endif
|
|
2054
|
+
#define __Pyx_Arg_NewRef_FASTCALL(arg) arg /* no-op, __Pyx_Arg_FASTCALL is direct and this needs
|
|
2055
|
+
to have the same reference counting */
|
|
2056
|
+
#define __Pyx_Arg_XDECREF_FASTCALL(arg)
|
|
1988
2057
|
#else
|
|
1989
2058
|
#define __Pyx_Arg_FASTCALL __Pyx_Arg_VARARGS
|
|
1990
2059
|
#define __Pyx_NumKwargs_FASTCALL __Pyx_NumKwargs_VARARGS
|
|
@@ -2131,7 +2200,11 @@ static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
|
|
|
2131
2200
|
Py_ssize_t len = Py_SIZE(list);
|
|
2132
2201
|
if (likely(L->allocated > len)) {
|
|
2133
2202
|
Py_INCREF(x);
|
|
2203
|
+
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000
|
|
2204
|
+
L->ob_item[len] = x;
|
|
2205
|
+
#else
|
|
2134
2206
|
PyList_SET_ITEM(list, len, x);
|
|
2207
|
+
#endif
|
|
2135
2208
|
__Pyx_SET_SIZE(list, len + 1);
|
|
2136
2209
|
return 0;
|
|
2137
2210
|
}
|
|
@@ -2244,7 +2317,11 @@ static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
|
|
|
2244
2317
|
Py_ssize_t len = Py_SIZE(list);
|
|
2245
2318
|
if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
|
|
2246
2319
|
Py_INCREF(x);
|
|
2320
|
+
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000
|
|
2321
|
+
L->ob_item[len] = x;
|
|
2322
|
+
#else
|
|
2247
2323
|
PyList_SET_ITEM(list, len, x);
|
|
2324
|
+
#endif
|
|
2248
2325
|
__Pyx_SET_SIZE(list, len + 1);
|
|
2249
2326
|
return 0;
|
|
2250
2327
|
}
|
|
@@ -2373,14 +2450,36 @@ static PyObject* __Pyx_PyObject_Format(PyObject* s, PyObject* f);
|
|
|
2373
2450
|
static double __Pyx_SlowPyString_AsDouble(PyObject *obj);
|
|
2374
2451
|
static double __Pyx__PyBytes_AsDouble(PyObject *obj, const char* start, Py_ssize_t length);
|
|
2375
2452
|
static CYTHON_INLINE double __Pyx_PyBytes_AsDouble(PyObject *obj) {
|
|
2376
|
-
|
|
2453
|
+
char* as_c_string;
|
|
2454
|
+
Py_ssize_t size;
|
|
2455
|
+
#if CYTHON_ASSUME_SAFE_MACROS
|
|
2456
|
+
as_c_string = PyBytes_AS_STRING(obj);
|
|
2457
|
+
size = PyBytes_GET_SIZE(obj);
|
|
2458
|
+
#else
|
|
2459
|
+
if (PyBytes_AsStringAndSize(obj, &as_c_string, &size) < 0) {
|
|
2460
|
+
return (double)-1;
|
|
2461
|
+
}
|
|
2462
|
+
#endif
|
|
2463
|
+
return __Pyx__PyBytes_AsDouble(obj, as_c_string, size);
|
|
2377
2464
|
}
|
|
2378
2465
|
static CYTHON_INLINE double __Pyx_PyByteArray_AsDouble(PyObject *obj) {
|
|
2379
|
-
|
|
2466
|
+
char* as_c_string;
|
|
2467
|
+
Py_ssize_t size;
|
|
2468
|
+
#if CYTHON_ASSUME_SAFE_MACROS
|
|
2469
|
+
as_c_string = PyByteArray_AS_STRING(obj);
|
|
2470
|
+
size = PyByteArray_GET_SIZE(obj);
|
|
2471
|
+
#else
|
|
2472
|
+
as_c_string = PyByteArray_AsString(obj);
|
|
2473
|
+
if (as_c_string == NULL) {
|
|
2474
|
+
return (double)-1;
|
|
2475
|
+
}
|
|
2476
|
+
size = PyByteArray_Size(obj);
|
|
2477
|
+
#endif
|
|
2478
|
+
return __Pyx__PyBytes_AsDouble(obj, as_c_string, size);
|
|
2380
2479
|
}
|
|
2381
2480
|
|
|
2382
2481
|
/* pyunicode_as_double.proto */
|
|
2383
|
-
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
|
|
2482
|
+
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY && CYTHON_ASSUME_SAFE_MACROS
|
|
2384
2483
|
static const char* __Pyx__PyUnicode_AsDouble_Copy(const void* data, const int kind, char* buffer, Py_ssize_t start, Py_ssize_t end) {
|
|
2385
2484
|
int last_was_punctuation;
|
|
2386
2485
|
Py_ssize_t i;
|
|
@@ -2491,7 +2590,7 @@ fallback:
|
|
|
2491
2590
|
}
|
|
2492
2591
|
#endif
|
|
2493
2592
|
static CYTHON_INLINE double __Pyx_PyUnicode_AsDouble(PyObject *obj) {
|
|
2494
|
-
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
|
|
2593
|
+
#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY && CYTHON_ASSUME_SAFE_MACROS
|
|
2495
2594
|
if (unlikely(__Pyx_PyUnicode_READY(obj) == -1))
|
|
2496
2595
|
return (double)-1;
|
|
2497
2596
|
if (likely(PyUnicode_IS_ASCII(obj))) {
|
|
@@ -2581,22 +2680,22 @@ static int __Pyx_setup_reduce(PyObject* type_obj);
|
|
|
2581
2680
|
#endif
|
|
2582
2681
|
|
|
2583
2682
|
/* TypeImport.proto */
|
|
2584
|
-
#ifndef
|
|
2585
|
-
#define
|
|
2683
|
+
#ifndef __PYX_HAVE_RT_ImportType_proto_3_0_10
|
|
2684
|
+
#define __PYX_HAVE_RT_ImportType_proto_3_0_10
|
|
2586
2685
|
#if defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L
|
|
2587
2686
|
#include <stdalign.h>
|
|
2588
2687
|
#endif
|
|
2589
2688
|
#if (defined (__STDC_VERSION__) && __STDC_VERSION__ >= 201112L) || __cplusplus >= 201103L
|
|
2590
|
-
#define
|
|
2689
|
+
#define __PYX_GET_STRUCT_ALIGNMENT_3_0_10(s) alignof(s)
|
|
2591
2690
|
#else
|
|
2592
|
-
#define
|
|
2691
|
+
#define __PYX_GET_STRUCT_ALIGNMENT_3_0_10(s) sizeof(void*)
|
|
2593
2692
|
#endif
|
|
2594
|
-
enum
|
|
2595
|
-
|
|
2596
|
-
|
|
2597
|
-
|
|
2693
|
+
enum __Pyx_ImportType_CheckSize_3_0_10 {
|
|
2694
|
+
__Pyx_ImportType_CheckSize_Error_3_0_10 = 0,
|
|
2695
|
+
__Pyx_ImportType_CheckSize_Warn_3_0_10 = 1,
|
|
2696
|
+
__Pyx_ImportType_CheckSize_Ignore_3_0_10 = 2
|
|
2598
2697
|
};
|
|
2599
|
-
static PyTypeObject *
|
|
2698
|
+
static PyTypeObject *__Pyx_ImportType_3_0_10(PyObject* module, const char *module_name, const char *class_name, size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_10 check_size);
|
|
2600
2699
|
#endif
|
|
2601
2700
|
|
|
2602
2701
|
/* Import.proto */
|
|
@@ -2707,7 +2806,7 @@ typedef struct {
|
|
|
2707
2806
|
#endif
|
|
2708
2807
|
void *defaults;
|
|
2709
2808
|
int defaults_pyobjects;
|
|
2710
|
-
size_t defaults_size;
|
|
2809
|
+
size_t defaults_size;
|
|
2711
2810
|
int flags;
|
|
2712
2811
|
PyObject *defaults_tuple;
|
|
2713
2812
|
PyObject *defaults_kwdict;
|
|
@@ -2715,9 +2814,13 @@ typedef struct {
|
|
|
2715
2814
|
PyObject *func_annotations;
|
|
2716
2815
|
PyObject *func_is_coroutine;
|
|
2717
2816
|
} __pyx_CyFunctionObject;
|
|
2817
|
+
#undef __Pyx_CyOrPyCFunction_Check
|
|
2718
2818
|
#define __Pyx_CyFunction_Check(obj) __Pyx_TypeCheck(obj, __pyx_CyFunctionType)
|
|
2719
|
-
#define
|
|
2819
|
+
#define __Pyx_CyOrPyCFunction_Check(obj) __Pyx_TypeCheck2(obj, __pyx_CyFunctionType, &PyCFunction_Type)
|
|
2720
2820
|
#define __Pyx_CyFunction_CheckExact(obj) __Pyx_IS_TYPE(obj, __pyx_CyFunctionType)
|
|
2821
|
+
static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc);
|
|
2822
|
+
#undef __Pyx_IsSameCFunction
|
|
2823
|
+
#define __Pyx_IsSameCFunction(func, cfunc) __Pyx__IsSameCyOrCFunction(func, cfunc)
|
|
2721
2824
|
static PyObject *__Pyx_CyFunction_Init(__pyx_CyFunctionObject* op, PyMethodDef *ml,
|
|
2722
2825
|
int flags, PyObject* qualname,
|
|
2723
2826
|
PyObject *closure,
|
|
@@ -2754,7 +2857,7 @@ static PyObject *__Pyx_CyFunction_New(PyMethodDef *ml,
|
|
|
2754
2857
|
PyObject* code);
|
|
2755
2858
|
|
|
2756
2859
|
/* SetNameInClass.proto */
|
|
2757
|
-
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
|
|
2860
|
+
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000
|
|
2758
2861
|
#define __Pyx_SetNameInClass(ns, name, value)\
|
|
2759
2862
|
(likely(PyDict_CheckExact(ns)) ? _PyDict_SetItem_KnownHash(ns, name, value, ((PyASCIIObject *) name)->hash) : PyObject_SetItem(ns, name, value))
|
|
2760
2863
|
#elif CYTHON_COMPILING_IN_CPYTHON
|
|
@@ -3042,7 +3145,8 @@ static PyObject *__Pyx_Generator_Next(PyObject *self);
|
|
|
3042
3145
|
static int __pyx_Generator_init(PyObject *module);
|
|
3043
3146
|
|
|
3044
3147
|
/* CheckBinaryVersion.proto */
|
|
3045
|
-
static
|
|
3148
|
+
static unsigned long __Pyx_get_runtime_version(void);
|
|
3149
|
+
static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer);
|
|
3046
3150
|
|
|
3047
3151
|
/* InitStrings.proto */
|
|
3048
3152
|
static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
|
|
@@ -4728,7 +4832,7 @@ static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
|
|
|
4728
4832
|
#define __pyx_codeobj__64 __pyx_mstate_global->__pyx_codeobj__64
|
|
4729
4833
|
/* #### Code section: module_code ### */
|
|
4730
4834
|
|
|
4731
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4835
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":245
|
|
4732
4836
|
*
|
|
4733
4837
|
* @property
|
|
4734
4838
|
* cdef inline PyObject* base(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -4739,7 +4843,7 @@ static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
|
|
|
4739
4843
|
static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self) {
|
|
4740
4844
|
PyObject *__pyx_r;
|
|
4741
4845
|
|
|
4742
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4846
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":248
|
|
4743
4847
|
* """Returns a borrowed reference to the object owning the data/memory.
|
|
4744
4848
|
* """
|
|
4745
4849
|
* return PyArray_BASE(self) # <<<<<<<<<<<<<<
|
|
@@ -4749,7 +4853,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
4749
4853
|
__pyx_r = PyArray_BASE(__pyx_v_self);
|
|
4750
4854
|
goto __pyx_L0;
|
|
4751
4855
|
|
|
4752
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4856
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":245
|
|
4753
4857
|
*
|
|
4754
4858
|
* @property
|
|
4755
4859
|
* cdef inline PyObject* base(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -4762,7 +4866,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
4762
4866
|
return __pyx_r;
|
|
4763
4867
|
}
|
|
4764
4868
|
|
|
4765
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4869
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":251
|
|
4766
4870
|
*
|
|
4767
4871
|
* @property
|
|
4768
4872
|
* cdef inline dtype descr(self): # <<<<<<<<<<<<<<
|
|
@@ -4774,9 +4878,9 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
4774
4878
|
PyArray_Descr *__pyx_r = NULL;
|
|
4775
4879
|
__Pyx_RefNannyDeclarations
|
|
4776
4880
|
PyArray_Descr *__pyx_t_1;
|
|
4777
|
-
__Pyx_RefNannySetupContext("descr",
|
|
4881
|
+
__Pyx_RefNannySetupContext("descr", 1);
|
|
4778
4882
|
|
|
4779
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4883
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":254
|
|
4780
4884
|
* """Returns an owned reference to the dtype of the array.
|
|
4781
4885
|
* """
|
|
4782
4886
|
* return <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
|
|
@@ -4789,7 +4893,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
4789
4893
|
__pyx_r = ((PyArray_Descr *)__pyx_t_1);
|
|
4790
4894
|
goto __pyx_L0;
|
|
4791
4895
|
|
|
4792
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4896
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":251
|
|
4793
4897
|
*
|
|
4794
4898
|
* @property
|
|
4795
4899
|
* cdef inline dtype descr(self): # <<<<<<<<<<<<<<
|
|
@@ -4804,7 +4908,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
4804
4908
|
return __pyx_r;
|
|
4805
4909
|
}
|
|
4806
4910
|
|
|
4807
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4911
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":257
|
|
4808
4912
|
*
|
|
4809
4913
|
* @property
|
|
4810
4914
|
* cdef inline int ndim(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -4815,7 +4919,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
4815
4919
|
static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self) {
|
|
4816
4920
|
int __pyx_r;
|
|
4817
4921
|
|
|
4818
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4922
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":260
|
|
4819
4923
|
* """Returns the number of dimensions in the array.
|
|
4820
4924
|
* """
|
|
4821
4925
|
* return PyArray_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -4825,7 +4929,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
4825
4929
|
__pyx_r = PyArray_NDIM(__pyx_v_self);
|
|
4826
4930
|
goto __pyx_L0;
|
|
4827
4931
|
|
|
4828
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4932
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":257
|
|
4829
4933
|
*
|
|
4830
4934
|
* @property
|
|
4831
4935
|
* cdef inline int ndim(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -4838,7 +4942,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
4838
4942
|
return __pyx_r;
|
|
4839
4943
|
}
|
|
4840
4944
|
|
|
4841
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4945
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":263
|
|
4842
4946
|
*
|
|
4843
4947
|
* @property
|
|
4844
4948
|
* cdef inline npy_intp *shape(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -4849,7 +4953,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
4849
4953
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self) {
|
|
4850
4954
|
npy_intp *__pyx_r;
|
|
4851
4955
|
|
|
4852
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4956
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":268
|
|
4853
4957
|
* Can return NULL for 0-dimensional arrays.
|
|
4854
4958
|
* """
|
|
4855
4959
|
* return PyArray_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -4859,7 +4963,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
4859
4963
|
__pyx_r = PyArray_DIMS(__pyx_v_self);
|
|
4860
4964
|
goto __pyx_L0;
|
|
4861
4965
|
|
|
4862
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4966
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":263
|
|
4863
4967
|
*
|
|
4864
4968
|
* @property
|
|
4865
4969
|
* cdef inline npy_intp *shape(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -4872,7 +4976,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
4872
4976
|
return __pyx_r;
|
|
4873
4977
|
}
|
|
4874
4978
|
|
|
4875
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4979
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":271
|
|
4876
4980
|
*
|
|
4877
4981
|
* @property
|
|
4878
4982
|
* cdef inline npy_intp *strides(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -4883,7 +4987,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
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static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self) {
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npy_intp *__pyx_r;
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":275
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* The number of elements matches the number of dimensions of the array (ndim).
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* """
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* return PyArray_STRIDES(self) # <<<<<<<<<<<<<<
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@@ -4893,7 +4997,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
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__pyx_r = PyArray_STRIDES(__pyx_v_self);
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goto __pyx_L0;
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":271
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*
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* @property
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* cdef inline npy_intp *strides(self) nogil: # <<<<<<<<<<<<<<
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@@ -4906,7 +5010,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
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return __pyx_r;
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}
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":278
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*
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* @property
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* cdef inline npy_intp size(self) nogil: # <<<<<<<<<<<<<<
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@@ -4917,7 +5021,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
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static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self) {
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npy_intp __pyx_r;
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* """Returns the total size (in number of elements) of the array.
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* """
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* return PyArray_SIZE(self) # <<<<<<<<<<<<<<
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@@ -4927,7 +5031,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
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__pyx_r = PyArray_SIZE(__pyx_v_self);
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goto __pyx_L0;
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*
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* @property
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* cdef inline npy_intp size(self) nogil: # <<<<<<<<<<<<<<
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@@ -4940,7 +5044,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
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return __pyx_r;
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}
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*
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* cdef inline char* data(self) nogil: # <<<<<<<<<<<<<<
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@@ -4951,7 +5055,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
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static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self) {
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char *__pyx_r;
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* of `PyArray_DATA()` instead, which returns a 'void*'.
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* """
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* return PyArray_BYTES(self) # <<<<<<<<<<<<<<
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@@ -4961,7 +5065,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
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__pyx_r = PyArray_BYTES(__pyx_v_self);
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goto __pyx_L0;
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*
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* @property
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* cdef inline char* data(self) nogil: # <<<<<<<<<<<<<<
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@@ -4974,7 +5078,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
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return __pyx_r;
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}
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* ctypedef npy_cdouble complex_t
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*
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* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
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@@ -4989,9 +5093,9 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
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int __pyx_lineno = 0;
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*
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* cdef inline object PyArray_MultiIterNew1(a):
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* return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
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@@ -5005,7 +5109,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
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* ctypedef npy_cdouble complex_t
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*
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* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
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@@ -5024,7 +5128,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
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* return PyArray_MultiIterNew(1, <void*>a)
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*
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* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
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@@ -5039,9 +5143,9 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
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int __pyx_lineno = 0;
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*
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* cdef inline object PyArray_MultiIterNew2(a, b):
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* return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
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@@ -5055,7 +5159,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
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* return PyArray_MultiIterNew(1, <void*>a)
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*
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* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
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@@ -5074,7 +5178,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
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* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
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*
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* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
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@@ -5089,9 +5193,9 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
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*
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* cdef inline object PyArray_MultiIterNew3(a, b, c):
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* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
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@@ -5105,7 +5209,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":782
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* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
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*
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* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
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@@ -5124,7 +5228,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
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* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
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*
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* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
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@@ -5139,9 +5243,9 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":786
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*
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* cdef inline object PyArray_MultiIterNew4(a, b, c, d):
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* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
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@@ -5155,7 +5259,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":785
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* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
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*
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* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
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@@ -5174,7 +5278,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
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* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
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* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
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@@ -5189,9 +5293,9 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
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*
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* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
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* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
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__pyx_t_1 = 0;
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|
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* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
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|
*
|
|
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5315
|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -5224,7 +5328,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
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|
return __pyx_r;
|
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|
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* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -5236,9 +5340,9 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
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|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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5348
|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -5248,7 +5352,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
__pyx_t_1 = PyDataType_HASSUBARRAY(__pyx_v_d);
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":793
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d):
|
|
5254
5358
|
* return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
|
|
@@ -5260,7 +5364,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
__pyx_r = ((PyObject*)__pyx_v_d->subarray->shape);
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":792
|
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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5370
|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -5269,7 +5373,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
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|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":795
|
|
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|
* return <tuple>d.subarray.shape
|
|
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|
* else:
|
|
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|
* return () # <<<<<<<<<<<<<<
|
|
@@ -5283,7 +5387,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
goto __pyx_L0;
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -5298,7 +5402,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
return __pyx_r;
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":970
|
|
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|
* int _import_umath() except -1
|
|
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|
*
|
|
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5408
|
* cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<<
|
|
@@ -5307,10 +5411,8 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
5307
5411
|
*/
|
|
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|
|
|
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|
static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_arr, PyObject *__pyx_v_base) {
|
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|
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__Pyx_RefNannySetupContext("set_array_base", 0);
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":971
|
|
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|
*
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base):
|
|
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|
* Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
|
|
@@ -5319,7 +5421,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
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|
|
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|
Py_INCREF(__pyx_v_base);
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":972
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base):
|
|
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|
* Py_INCREF(base) # important to do this before stealing the reference below!
|
|
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5427
|
* PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
|
|
@@ -5328,7 +5430,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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5430
|
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|
|
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|
(void)(PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base));
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":970
|
|
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|
* int _import_umath() except -1
|
|
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|
*
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<<
|
|
@@ -5337,10 +5439,9 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
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|
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|
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|
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|
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":974
|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
5345
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|
*
|
|
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5447
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -5353,9 +5454,9 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
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|
|
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|
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|
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|
|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":975
|
|
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|
*
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
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5462
|
* base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
|
|
@@ -5364,7 +5465,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
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|
|
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|
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|
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|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":976
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
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|
* base = PyArray_BASE(arr)
|
|
5370
5471
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -5374,7 +5475,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
__pyx_t_1 = (__pyx_v_base == NULL);
|
|
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|
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|
|
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|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":977
|
|
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5479
|
* base = PyArray_BASE(arr)
|
|
5379
5480
|
* if base is NULL:
|
|
5380
5481
|
* return None # <<<<<<<<<<<<<<
|
|
@@ -5385,7 +5486,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
5385
5486
|
__pyx_r = Py_None; __Pyx_INCREF(Py_None);
|
|
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|
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|
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|
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|
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|
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|
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|
+
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|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
5390
5491
|
* base = PyArray_BASE(arr)
|
|
5391
5492
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -5394,7 +5495,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
5394
5495
|
*/
|
|
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5496
|
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|
|
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5497
|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":978
|
|
5398
5499
|
* if base is NULL:
|
|
5399
5500
|
* return None
|
|
5400
5501
|
* return <object>base # <<<<<<<<<<<<<<
|
|
@@ -5406,7 +5507,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
5406
5507
|
__pyx_r = ((PyObject *)__pyx_v_base);
|
|
5407
5508
|
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|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":974
|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
5411
5512
|
*
|
|
5412
5513
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -5421,7 +5522,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
5421
5522
|
return __pyx_r;
|
|
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|
}
|
|
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5524
|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":982
|
|
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|
* # Versions of the import_* functions which are more suitable for
|
|
5426
5527
|
* # Cython code.
|
|
5427
5528
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -5443,9 +5544,9 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
5443
5544
|
int __pyx_lineno = 0;
|
|
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|
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|
|
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|
int __pyx_clineno = 0;
|
|
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|
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__Pyx_RefNannySetupContext("import_array",
|
|
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|
+
__Pyx_RefNannySetupContext("import_array", 1);
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":983
|
|
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5550
|
* # Cython code.
|
|
5450
5551
|
* cdef inline int import_array() except -1:
|
|
5451
5552
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5461,7 +5562,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
5461
5562
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
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5563
|
/*try:*/ {
|
|
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5564
|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
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|
|
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|
* cdef inline int import_array() except -1:
|
|
5466
5567
|
* try:
|
|
5467
5568
|
* __pyx_import_array() # <<<<<<<<<<<<<<
|
|
@@ -5470,7 +5571,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
5470
5571
|
*/
|
|
5471
5572
|
__pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 984, __pyx_L3_error)
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":983
|
|
5474
5575
|
* # Cython code.
|
|
5475
5576
|
* cdef inline int import_array() except -1:
|
|
5476
5577
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5484,7 +5585,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
5484
5585
|
goto __pyx_L8_try_end;
|
|
5485
5586
|
__pyx_L3_error:;
|
|
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5587
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5588
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":985
|
|
5488
5589
|
* try:
|
|
5489
5590
|
* __pyx_import_array()
|
|
5490
5591
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -5499,7 +5600,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
5499
5600
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
5500
5601
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
5501
5602
|
|
|
5502
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5603
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":986
|
|
5503
5604
|
* __pyx_import_array()
|
|
5504
5605
|
* except Exception:
|
|
5505
5606
|
* raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
|
|
@@ -5514,7 +5615,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
5514
5615
|
}
|
|
5515
5616
|
goto __pyx_L5_except_error;
|
|
5516
5617
|
|
|
5517
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5618
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":983
|
|
5518
5619
|
* # Cython code.
|
|
5519
5620
|
* cdef inline int import_array() except -1:
|
|
5520
5621
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5530,7 +5631,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
5530
5631
|
__pyx_L8_try_end:;
|
|
5531
5632
|
}
|
|
5532
5633
|
|
|
5533
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5634
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":982
|
|
5534
5635
|
* # Versions of the import_* functions which are more suitable for
|
|
5535
5636
|
* # Cython code.
|
|
5536
5637
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -5553,7 +5654,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
5553
5654
|
return __pyx_r;
|
|
5554
5655
|
}
|
|
5555
5656
|
|
|
5556
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5657
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":988
|
|
5557
5658
|
* raise ImportError("numpy.core.multiarray failed to import")
|
|
5558
5659
|
*
|
|
5559
5660
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -5575,9 +5676,9 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
5575
5676
|
int __pyx_lineno = 0;
|
|
5576
5677
|
const char *__pyx_filename = NULL;
|
|
5577
5678
|
int __pyx_clineno = 0;
|
|
5578
|
-
__Pyx_RefNannySetupContext("import_umath",
|
|
5679
|
+
__Pyx_RefNannySetupContext("import_umath", 1);
|
|
5579
5680
|
|
|
5580
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5681
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":989
|
|
5581
5682
|
*
|
|
5582
5683
|
* cdef inline int import_umath() except -1:
|
|
5583
5684
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5593,7 +5694,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
5593
5694
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
5594
5695
|
/*try:*/ {
|
|
5595
5696
|
|
|
5596
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5697
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":990
|
|
5597
5698
|
* cdef inline int import_umath() except -1:
|
|
5598
5699
|
* try:
|
|
5599
5700
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -5602,7 +5703,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
5602
5703
|
*/
|
|
5603
5704
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 990, __pyx_L3_error)
|
|
5604
5705
|
|
|
5605
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5706
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":989
|
|
5606
5707
|
*
|
|
5607
5708
|
* cdef inline int import_umath() except -1:
|
|
5608
5709
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5616,7 +5717,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
5616
5717
|
goto __pyx_L8_try_end;
|
|
5617
5718
|
__pyx_L3_error:;
|
|
5618
5719
|
|
|
5619
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5720
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":991
|
|
5620
5721
|
* try:
|
|
5621
5722
|
* _import_umath()
|
|
5622
5723
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -5631,7 +5732,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
5631
5732
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
5632
5733
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
5633
5734
|
|
|
5634
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5735
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":992
|
|
5635
5736
|
* _import_umath()
|
|
5636
5737
|
* except Exception:
|
|
5637
5738
|
* raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -5646,7 +5747,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
5646
5747
|
}
|
|
5647
5748
|
goto __pyx_L5_except_error;
|
|
5648
5749
|
|
|
5649
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5750
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":989
|
|
5650
5751
|
*
|
|
5651
5752
|
* cdef inline int import_umath() except -1:
|
|
5652
5753
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5662,7 +5763,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
5662
5763
|
__pyx_L8_try_end:;
|
|
5663
5764
|
}
|
|
5664
5765
|
|
|
5665
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5766
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":988
|
|
5666
5767
|
* raise ImportError("numpy.core.multiarray failed to import")
|
|
5667
5768
|
*
|
|
5668
5769
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -5685,7 +5786,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
5685
5786
|
return __pyx_r;
|
|
5686
5787
|
}
|
|
5687
5788
|
|
|
5688
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5789
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":994
|
|
5689
5790
|
* raise ImportError("numpy.core.umath failed to import")
|
|
5690
5791
|
*
|
|
5691
5792
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -5707,9 +5808,9 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5707
5808
|
int __pyx_lineno = 0;
|
|
5708
5809
|
const char *__pyx_filename = NULL;
|
|
5709
5810
|
int __pyx_clineno = 0;
|
|
5710
|
-
__Pyx_RefNannySetupContext("import_ufunc",
|
|
5811
|
+
__Pyx_RefNannySetupContext("import_ufunc", 1);
|
|
5711
5812
|
|
|
5712
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5813
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
|
|
5713
5814
|
*
|
|
5714
5815
|
* cdef inline int import_ufunc() except -1:
|
|
5715
5816
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5725,7 +5826,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5725
5826
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
5726
5827
|
/*try:*/ {
|
|
5727
5828
|
|
|
5728
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5829
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":996
|
|
5729
5830
|
* cdef inline int import_ufunc() except -1:
|
|
5730
5831
|
* try:
|
|
5731
5832
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -5734,7 +5835,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5734
5835
|
*/
|
|
5735
5836
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 996, __pyx_L3_error)
|
|
5736
5837
|
|
|
5737
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5838
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
|
|
5738
5839
|
*
|
|
5739
5840
|
* cdef inline int import_ufunc() except -1:
|
|
5740
5841
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5748,7 +5849,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5748
5849
|
goto __pyx_L8_try_end;
|
|
5749
5850
|
__pyx_L3_error:;
|
|
5750
5851
|
|
|
5751
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5852
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":997
|
|
5752
5853
|
* try:
|
|
5753
5854
|
* _import_umath()
|
|
5754
5855
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -5763,7 +5864,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5763
5864
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
5764
5865
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
5765
5866
|
|
|
5766
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5867
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":998
|
|
5767
5868
|
* _import_umath()
|
|
5768
5869
|
* except Exception:
|
|
5769
5870
|
* raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -5778,7 +5879,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5778
5879
|
}
|
|
5779
5880
|
goto __pyx_L5_except_error;
|
|
5780
5881
|
|
|
5781
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5882
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":995
|
|
5782
5883
|
*
|
|
5783
5884
|
* cdef inline int import_ufunc() except -1:
|
|
5784
5885
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -5794,7 +5895,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5794
5895
|
__pyx_L8_try_end:;
|
|
5795
5896
|
}
|
|
5796
5897
|
|
|
5797
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5898
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":994
|
|
5798
5899
|
* raise ImportError("numpy.core.umath failed to import")
|
|
5799
5900
|
*
|
|
5800
5901
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -5817,7 +5918,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5817
5918
|
return __pyx_r;
|
|
5818
5919
|
}
|
|
5819
5920
|
|
|
5820
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5921
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1001
|
|
5821
5922
|
*
|
|
5822
5923
|
*
|
|
5823
5924
|
* cdef inline bint is_timedelta64_object(object obj): # <<<<<<<<<<<<<<
|
|
@@ -5827,10 +5928,8 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
5827
5928
|
|
|
5828
5929
|
static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
|
|
5829
5930
|
int __pyx_r;
|
|
5830
|
-
__Pyx_RefNannyDeclarations
|
|
5831
|
-
__Pyx_RefNannySetupContext("is_timedelta64_object", 0);
|
|
5832
5931
|
|
|
5833
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5932
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1013
|
|
5834
5933
|
* bool
|
|
5835
5934
|
* """
|
|
5836
5935
|
* return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -5840,7 +5939,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
5840
5939
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
|
|
5841
5940
|
goto __pyx_L0;
|
|
5842
5941
|
|
|
5843
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5942
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1001
|
|
5844
5943
|
*
|
|
5845
5944
|
*
|
|
5846
5945
|
* cdef inline bint is_timedelta64_object(object obj): # <<<<<<<<<<<<<<
|
|
@@ -5850,11 +5949,10 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
5850
5949
|
|
|
5851
5950
|
/* function exit code */
|
|
5852
5951
|
__pyx_L0:;
|
|
5853
|
-
__Pyx_RefNannyFinishContext();
|
|
5854
5952
|
return __pyx_r;
|
|
5855
5953
|
}
|
|
5856
5954
|
|
|
5857
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5955
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1016
|
|
5858
5956
|
*
|
|
5859
5957
|
*
|
|
5860
5958
|
* cdef inline bint is_datetime64_object(object obj): # <<<<<<<<<<<<<<
|
|
@@ -5864,10 +5962,8 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
5864
5962
|
|
|
5865
5963
|
static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
|
|
5866
5964
|
int __pyx_r;
|
|
5867
|
-
__Pyx_RefNannyDeclarations
|
|
5868
|
-
__Pyx_RefNannySetupContext("is_datetime64_object", 0);
|
|
5869
5965
|
|
|
5870
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
5966
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1028
|
|
5871
5967
|
* bool
|
|
5872
5968
|
* """
|
|
5873
5969
|
* return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -5877,7 +5973,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
5877
5973
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
|
|
5878
5974
|
goto __pyx_L0;
|
|
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5975
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1016
|
|
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|
*
|
|
5882
5978
|
*
|
|
5883
5979
|
* cdef inline bint is_datetime64_object(object obj): # <<<<<<<<<<<<<<
|
|
@@ -5887,11 +5983,10 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
5887
5983
|
|
|
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5984
|
/* function exit code */
|
|
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|
__pyx_L0:;
|
|
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|
-
__Pyx_RefNannyFinishContext();
|
|
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|
return __pyx_r;
|
|
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|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1031
|
|
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|
*
|
|
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5991
|
*
|
|
5897
5992
|
* cdef inline npy_datetime get_datetime64_value(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -5902,7 +5997,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
5902
5997
|
static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
|
|
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5998
|
npy_datetime __pyx_r;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1038
|
|
5906
6001
|
* also needed. That can be found using `get_datetime64_unit`.
|
|
5907
6002
|
* """
|
|
5908
6003
|
* return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -5912,7 +6007,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
5912
6007
|
__pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
|
|
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6008
|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1031
|
|
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6011
|
*
|
|
5917
6012
|
*
|
|
5918
6013
|
* cdef inline npy_datetime get_datetime64_value(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -5925,7 +6020,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
5925
6020
|
return __pyx_r;
|
|
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6021
|
}
|
|
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6022
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1041
|
|
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6024
|
*
|
|
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6025
|
*
|
|
5931
6026
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -5936,7 +6031,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
5936
6031
|
static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
|
|
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6032
|
npy_timedelta __pyx_r;
|
|
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6033
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1045
|
|
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6035
|
* returns the int64 value underlying scalar numpy timedelta64 object
|
|
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6036
|
* """
|
|
5942
6037
|
* return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -5946,7 +6041,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
5946
6041
|
__pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
|
|
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6042
|
goto __pyx_L0;
|
|
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6043
|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1041
|
|
5950
6045
|
*
|
|
5951
6046
|
*
|
|
5952
6047
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -5959,7 +6054,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
5959
6054
|
return __pyx_r;
|
|
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6055
|
}
|
|
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6056
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1048
|
|
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6058
|
*
|
|
5964
6059
|
*
|
|
5965
6060
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -5970,7 +6065,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
5970
6065
|
static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
|
|
5971
6066
|
NPY_DATETIMEUNIT __pyx_r;
|
|
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6067
|
|
|
5973
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1052
|
|
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6069
|
* returns the unit part of the dtype for a numpy datetime64 object.
|
|
5975
6070
|
* """
|
|
5976
6071
|
* return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
|
|
@@ -5978,7 +6073,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
5978
6073
|
__pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
|
|
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6074
|
goto __pyx_L0;
|
|
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6075
|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1048
|
|
5982
6077
|
*
|
|
5983
6078
|
*
|
|
5984
6079
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -6032,8 +6127,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
6032
6127
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
6033
6128
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
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6129
|
#else
|
|
6035
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
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|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 79, __pyx_L3_error)
|
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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6131
|
#endif
|
|
6038
6132
|
#endif
|
|
6039
6133
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -6082,10 +6176,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
6082
6176
|
__pyx_v_self = values[0];
|
|
6083
6177
|
__pyx_v_root = ((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)values[1]);
|
|
6084
6178
|
}
|
|
6085
|
-
goto
|
|
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|
+
goto __pyx_L6_skip;
|
|
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6180
|
__pyx_L5_argtuple_error:;
|
|
6087
6181
|
__Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, __pyx_nargs); __PYX_ERR(0, 79, __pyx_L3_error)
|
|
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|
-
|
|
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|
+
__pyx_L6_skip:;
|
|
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|
+
goto __pyx_L4_argument_unpacking_done;
|
|
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6184
|
__pyx_L3_error:;
|
|
6090
6185
|
{
|
|
6091
6186
|
Py_ssize_t __pyx_temp;
|
|
@@ -6138,7 +6233,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree___init__(CYTHON_
|
|
|
6138
6233
|
int __pyx_lineno = 0;
|
|
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6234
|
const char *__pyx_filename = NULL;
|
|
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|
int __pyx_clineno = 0;
|
|
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|
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__Pyx_RefNannySetupContext("__init__",
|
|
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|
+
__Pyx_RefNannySetupContext("__init__", 1);
|
|
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|
|
|
6143
6238
|
/* "biotite/sequence/phylo/tree.pyx":80
|
|
6144
6239
|
*
|
|
@@ -6164,7 +6259,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree___init__(CYTHON_
|
|
|
6164
6259
|
}
|
|
6165
6260
|
#endif
|
|
6166
6261
|
{
|
|
6167
|
-
PyObject *__pyx_callargs[
|
|
6262
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL};
|
|
6168
6263
|
__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
|
6169
6264
|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
6170
6265
|
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 80, __pyx_L1_error)
|
|
@@ -6209,7 +6304,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree___init__(CYTHON_
|
|
|
6209
6304
|
}
|
|
6210
6305
|
#endif
|
|
6211
6306
|
{
|
|
6212
|
-
PyObject *__pyx_callargs[
|
|
6307
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_2, NULL};
|
|
6213
6308
|
__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_3, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
|
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6309
|
__Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
6215
6310
|
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 83, __pyx_L1_error)
|
|
@@ -6261,13 +6356,20 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree___init__(CYTHON_
|
|
|
6261
6356
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
|
6262
6357
|
__PYX_ERR(0, 86, __pyx_L5_error)
|
|
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6358
|
}
|
|
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|
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__pyx_t_6 = __pyx_v_leaves_unsorted; __Pyx_INCREF(__pyx_t_6);
|
|
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|
+
__pyx_t_6 = __pyx_v_leaves_unsorted; __Pyx_INCREF(__pyx_t_6);
|
|
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|
+
__pyx_t_5 = 0;
|
|
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6361
|
for (;;) {
|
|
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|
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|
|
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|
+
{
|
|
6363
|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_6);
|
|
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|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 86, __pyx_L5_error)
|
|
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|
+
#endif
|
|
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|
+
if (__pyx_t_5 >= __pyx_temp) break;
|
|
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|
+
}
|
|
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6369
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
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6370
|
__pyx_t_7 = PyList_GET_ITEM(__pyx_t_6, __pyx_t_5); __Pyx_INCREF(__pyx_t_7); __pyx_t_5++; if (unlikely((0 < 0))) __PYX_ERR(0, 86, __pyx_L5_error)
|
|
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6371
|
#else
|
|
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|
-
__pyx_t_7 =
|
|
6372
|
+
__pyx_t_7 = __Pyx_PySequence_ITEM(__pyx_t_6, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 86, __pyx_L5_error)
|
|
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6373
|
__Pyx_GOTREF(__pyx_t_7);
|
|
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6374
|
#endif
|
|
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6375
|
__Pyx_XDECREF_SET(__pyx_7genexpr__pyx_v_leaf, __pyx_t_7);
|
|
@@ -6514,8 +6616,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
6514
6616
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
6515
6617
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
6516
6618
|
#else
|
|
6517
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
6518
|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 97, __pyx_L3_error)
|
|
6619
|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
6519
6620
|
#endif
|
|
6520
6621
|
#endif
|
|
6521
6622
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -6550,10 +6651,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
6550
6651
|
}
|
|
6551
6652
|
__pyx_v_self = values[0];
|
|
6552
6653
|
}
|
|
6553
|
-
goto
|
|
6654
|
+
goto __pyx_L6_skip;
|
|
6554
6655
|
__pyx_L5_argtuple_error:;
|
|
6555
6656
|
__Pyx_RaiseArgtupleInvalid("__copy_create__", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 97, __pyx_L3_error)
|
|
6556
|
-
|
|
6657
|
+
__pyx_L6_skip:;
|
|
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|
+
goto __pyx_L4_argument_unpacking_done;
|
|
6557
6659
|
__pyx_L3_error:;
|
|
6558
6660
|
{
|
|
6559
6661
|
Py_ssize_t __pyx_temp;
|
|
@@ -6590,7 +6692,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_2__copy_create__
|
|
|
6590
6692
|
int __pyx_lineno = 0;
|
|
6591
6693
|
const char *__pyx_filename = NULL;
|
|
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6694
|
int __pyx_clineno = 0;
|
|
6593
|
-
__Pyx_RefNannySetupContext("__copy_create__",
|
|
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|
+
__Pyx_RefNannySetupContext("__copy_create__", 1);
|
|
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6696
|
|
|
6595
6697
|
/* "biotite/sequence/phylo/tree.pyx":98
|
|
6596
6698
|
*
|
|
@@ -6622,7 +6724,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_2__copy_create__
|
|
|
6622
6724
|
}
|
|
6623
6725
|
#endif
|
|
6624
6726
|
{
|
|
6625
|
-
PyObject *__pyx_callargs[
|
|
6727
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_4, NULL};
|
|
6626
6728
|
__pyx_t_3 = __Pyx_PyObject_FastCall(__pyx_t_5, __pyx_callargs+1-__pyx_t_6, 0+__pyx_t_6);
|
|
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6729
|
__Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
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6730
|
if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 98, __pyx_L1_error)
|
|
@@ -6719,8 +6821,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
6719
6821
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
6720
6822
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
6721
6823
|
#else
|
|
6722
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
6723
|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 100, __pyx_L3_error)
|
|
6824
|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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6825
|
#endif
|
|
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6826
|
#endif
|
|
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6827
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -6755,10 +6856,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
6755
6856
|
}
|
|
6756
6857
|
__pyx_v_self = values[0];
|
|
6757
6858
|
}
|
|
6758
|
-
goto
|
|
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|
+
goto __pyx_L6_skip;
|
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|
__pyx_L5_argtuple_error:;
|
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6861
|
__Pyx_RaiseArgtupleInvalid("root", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 100, __pyx_L3_error)
|
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|
-
|
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|
+
__pyx_L6_skip:;
|
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|
+
goto __pyx_L4_argument_unpacking_done;
|
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6864
|
__pyx_L3_error:;
|
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6763
6865
|
{
|
|
6764
6866
|
Py_ssize_t __pyx_temp;
|
|
@@ -6790,7 +6892,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_4root(CYTHON_UNU
|
|
|
6790
6892
|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
|
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6792
6894
|
int __pyx_clineno = 0;
|
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6793
|
-
__Pyx_RefNannySetupContext("root",
|
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6895
|
+
__Pyx_RefNannySetupContext("root", 1);
|
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6896
|
|
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6795
6897
|
/* "biotite/sequence/phylo/tree.pyx":102
|
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6898
|
* @property
|
|
@@ -6865,8 +6967,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
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6865
6967
|
#if CYTHON_ASSUME_SAFE_MACROS
|
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6968
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
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6969
|
#else
|
|
6868
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
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|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 104, __pyx_L3_error)
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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6971
|
#endif
|
|
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6972
|
#endif
|
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6973
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -6901,10 +7002,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
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6901
7002
|
}
|
|
6902
7003
|
__pyx_v_self = values[0];
|
|
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|
}
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-
goto
|
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|
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goto __pyx_L6_skip;
|
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|
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|
__Pyx_RaiseArgtupleInvalid("leaves", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 104, __pyx_L3_error)
|
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-
|
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|
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goto __pyx_L4_argument_unpacking_done;
|
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|
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|
{
|
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|
Py_ssize_t __pyx_temp;
|
|
@@ -6940,7 +7042,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_6leaves(CYTHON_U
|
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|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
|
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|
int __pyx_clineno = 0;
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-
__Pyx_RefNannySetupContext("leaves",
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+
__Pyx_RefNannySetupContext("leaves", 1);
|
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/* "biotite/sequence/phylo/tree.pyx":106
|
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* @property
|
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@@ -7047,8 +7149,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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|
#if CYTHON_ASSUME_SAFE_MACROS
|
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__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
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|
#else
|
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-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
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-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 108, __pyx_L3_error)
|
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+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
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|
#endif
|
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|
#endif
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -7083,10 +7184,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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}
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|
__pyx_v_self = values[0];
|
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}
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-
goto
|
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+
goto __pyx_L6_skip;
|
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|
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-
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goto __pyx_L4_argument_unpacking_done;
|
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|
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|
{
|
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|
Py_ssize_t __pyx_temp;
|
|
@@ -7185,13 +7287,20 @@ static PyObject *__pyx_gb_7biotite_8sequence_5phylo_4tree_4Tree_8as_graph_2gener
|
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|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
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__PYX_ERR(0, 173, __pyx_L1_error)
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}
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__pyx_t_1 = __pyx_cur_scope->__pyx_genexpr_arg_0; __Pyx_INCREF(__pyx_t_1);
|
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__pyx_t_1 = __pyx_cur_scope->__pyx_genexpr_arg_0; __Pyx_INCREF(__pyx_t_1);
|
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for (;;) {
|
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-
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{
|
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+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_1);
|
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#if !CYTHON_ASSUME_SAFE_MACROS
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 173, __pyx_L1_error)
|
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#endif
|
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+
if (__pyx_t_2 >= __pyx_temp) break;
|
|
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}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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__pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_2); __Pyx_INCREF(__pyx_t_3); __pyx_t_2++; if (unlikely((0 < 0))) __PYX_ERR(0, 173, __pyx_L1_error)
|
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#else
|
|
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__pyx_t_3 =
|
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+
__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_1, __pyx_t_2); __pyx_t_2++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 173, __pyx_L1_error)
|
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|
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__Pyx_XGOTREF(__pyx_cur_scope->__pyx_v_child);
|
|
@@ -7317,7 +7426,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_8as_graph(CYTHON
|
|
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}
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#endif
|
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{
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PyObject *__pyx_callargs[
|
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+
PyObject *__pyx_callargs[2] = {__pyx_t_2, NULL};
|
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__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_3, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
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__Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
|
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|
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 144, __pyx_L1_error)
|
|
@@ -7453,7 +7562,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_8as_graph(CYTHON
|
|
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|
}
|
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|
#endif
|
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|
{
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PyObject *__pyx_callargs[
|
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+
PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL};
|
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__pyx_t_2 = __Pyx_PyObject_FastCall(__pyx_t_1, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
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__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
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if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 158, __pyx_L1_error)
|
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@@ -7520,13 +7629,20 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_8as_graph(CYTHON
|
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PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
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__pyx_t_2 = __pyx_v_children; __Pyx_INCREF(__pyx_t_2);
|
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__pyx_t_2 = __pyx_v_children; __Pyx_INCREF(__pyx_t_2);
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__pyx_t_6 = 0;
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|
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{
|
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Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_2);
|
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+
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 163, __pyx_L1_error)
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#endif
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+
if (__pyx_t_6 >= __pyx_temp) break;
|
|
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|
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}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
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|
__pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_6); __Pyx_INCREF(__pyx_t_1); __pyx_t_6++; if (unlikely((0 < 0))) __PYX_ERR(0, 163, __pyx_L1_error)
|
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|
#else
|
|
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|
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__pyx_t_1 =
|
|
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|
+
__pyx_t_1 = __Pyx_PySequence_ITEM(__pyx_t_2, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 163, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_1);
|
|
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#endif
|
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|
if (!(likely(((__pyx_t_1) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_1, __pyx_ptype_7biotite_8sequence_5phylo_4tree_TreeNode))))) __PYX_ERR(0, 163, __pyx_L1_error)
|
|
@@ -7648,13 +7764,20 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_8as_graph(CYTHON
|
|
|
7648
7764
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
|
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7765
|
__PYX_ERR(0, 176, __pyx_L1_error)
|
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7766
|
}
|
|
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|
-
__pyx_t_1 = __pyx_v_children; __Pyx_INCREF(__pyx_t_1);
|
|
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|
+
__pyx_t_1 = __pyx_v_children; __Pyx_INCREF(__pyx_t_1);
|
|
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|
+
__pyx_t_6 = 0;
|
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|
for (;;) {
|
|
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|
-
|
|
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|
+
{
|
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_1);
|
|
7772
|
+
#if !CYTHON_ASSUME_SAFE_MACROS
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|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 176, __pyx_L1_error)
|
|
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|
+
#endif
|
|
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|
+
if (__pyx_t_6 >= __pyx_temp) break;
|
|
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|
+
}
|
|
7654
7777
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
7655
7778
|
__pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_6); __Pyx_INCREF(__pyx_t_2); __pyx_t_6++; if (unlikely((0 < 0))) __PYX_ERR(0, 176, __pyx_L1_error)
|
|
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7779
|
#else
|
|
7657
|
-
__pyx_t_2 =
|
|
7780
|
+
__pyx_t_2 = __Pyx_PySequence_ITEM(__pyx_t_1, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 176, __pyx_L1_error)
|
|
7658
7781
|
__Pyx_GOTREF(__pyx_t_2);
|
|
7659
7782
|
#endif
|
|
7660
7783
|
if (!(likely(((__pyx_t_2) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_2, __pyx_ptype_7biotite_8sequence_5phylo_4tree_TreeNode))))) __PYX_ERR(0, 176, __pyx_L1_error)
|
|
@@ -7762,7 +7885,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_8as_graph(CYTHON
|
|
|
7762
7885
|
}
|
|
7763
7886
|
#endif
|
|
7764
7887
|
{
|
|
7765
|
-
PyObject *__pyx_callargs[
|
|
7888
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL};
|
|
7766
7889
|
__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_9, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
|
7767
7890
|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
7768
7891
|
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 184, __pyx_L1_error)
|
|
@@ -7937,8 +8060,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
7937
8060
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
7938
8061
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
7939
8062
|
#else
|
|
7940
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
7941
|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 201, __pyx_L3_error)
|
|
8063
|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
7942
8064
|
#endif
|
|
7943
8065
|
#endif
|
|
7944
8066
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -8019,10 +8141,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
8019
8141
|
__pyx_v_topological = ((int)((int)0));
|
|
8020
8142
|
}
|
|
8021
8143
|
}
|
|
8022
|
-
goto
|
|
8144
|
+
goto __pyx_L6_skip;
|
|
8023
8145
|
__pyx_L5_argtuple_error:;
|
|
8024
8146
|
__Pyx_RaiseArgtupleInvalid("get_distance", 0, 3, 4, __pyx_nargs); __PYX_ERR(0, 201, __pyx_L3_error)
|
|
8025
|
-
|
|
8147
|
+
__pyx_L6_skip:;
|
|
8148
|
+
goto __pyx_L4_argument_unpacking_done;
|
|
8026
8149
|
__pyx_L3_error:;
|
|
8027
8150
|
{
|
|
8028
8151
|
Py_ssize_t __pyx_temp;
|
|
@@ -8059,7 +8182,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_10get_distance(C
|
|
|
8059
8182
|
int __pyx_lineno = 0;
|
|
8060
8183
|
const char *__pyx_filename = NULL;
|
|
8061
8184
|
int __pyx_clineno = 0;
|
|
8062
|
-
__Pyx_RefNannySetupContext("get_distance",
|
|
8185
|
+
__Pyx_RefNannySetupContext("get_distance", 1);
|
|
8063
8186
|
|
|
8064
8187
|
/* "biotite/sequence/phylo/tree.pyx":242
|
|
8065
8188
|
* 20.0
|
|
@@ -8187,8 +8310,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
8187
8310
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
8188
8311
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
8189
8312
|
#else
|
|
8190
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
8191
|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 246, __pyx_L3_error)
|
|
8313
|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
8192
8314
|
#endif
|
|
8193
8315
|
#endif
|
|
8194
8316
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -8283,10 +8405,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
8283
8405
|
}
|
|
8284
8406
|
__pyx_v_round_distance = values[3];
|
|
8285
8407
|
}
|
|
8286
|
-
goto
|
|
8408
|
+
goto __pyx_L6_skip;
|
|
8287
8409
|
__pyx_L5_argtuple_error:;
|
|
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|
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|
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|
{
|
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|
Py_ssize_t __pyx_temp;
|
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@@ -8322,7 +8445,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_12to_newick(CYTH
|
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|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
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__Pyx_RefNannySetupContext("to_newick",
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/* "biotite/sequence/phylo/tree.pyx":286
|
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|
* ((foo,bar),foobar);
|
|
@@ -8449,8 +8572,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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8449
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|
#if CYTHON_ASSUME_SAFE_MACROS
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|
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|
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|
|
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|
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__pyx_nargs = PyTuple_Size(__pyx_args);
|
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 290, __pyx_L3_error)
|
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
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|
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|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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@@ -8508,10 +8630,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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__pyx_v_newick = ((PyObject*)values[0]);
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}
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goto
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|
{
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#if CYTHON_ASSUME_SAFE_MACROS
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__pyx_nargs = PyTuple_Size(__pyx_args);
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 332, __pyx_L3_error)
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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@@ -8897,10 +9019,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
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goto
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goto __pyx_L4_argument_unpacking_done;
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{
|
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Py_ssize_t __pyx_temp;
|
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@@ -8935,7 +9058,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_16__str__(CYTHON
|
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int __pyx_lineno = 0;
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/* "biotite/sequence/phylo/tree.pyx":333
|
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*
|
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@@ -8962,7 +9085,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_16__str__(CYTHON
|
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{
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PyObject *__pyx_callargs[
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+
PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL};
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__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
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__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
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@@ -9034,8 +9157,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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__pyx_nargs = PyTuple_Size(__pyx_args);
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 335, __pyx_L3_error)
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
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__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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@@ -9070,10 +9192,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
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goto
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{
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@@ -9106,7 +9229,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_18__len__(CYTHON
|
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int __pyx_lineno = 0;
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__Pyx_RefNannySetupContext("__len__",
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/* "biotite/sequence/phylo/tree.pyx":336
|
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|
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@@ -9186,8 +9309,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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|
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|
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__pyx_nargs = PyTuple_Size(__pyx_args);
|
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 338, __pyx_L3_error)
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
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|
#endif
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__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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@@ -9236,10 +9358,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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__pyx_v_self = values[0];
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goto
|
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+
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|
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|
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{
|
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Py_ssize_t __pyx_temp;
|
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@@ -9275,7 +9398,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_20__eq__(CYTHON_
|
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|
int __pyx_lineno = 0;
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/* "biotite/sequence/phylo/tree.pyx":339
|
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|
*
|
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@@ -9392,8 +9515,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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|
#if CYTHON_ASSUME_SAFE_MACROS
|
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|
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|
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|
|
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__pyx_nargs = PyTuple_Size(__pyx_args);
|
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 343, __pyx_L3_error)
|
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
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|
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|
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|
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|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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@@ -9428,10 +9550,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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|
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|
}
|
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|
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|
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|
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|
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goto
|
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|
+
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|
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|
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|
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|
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|
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+
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|
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+
goto __pyx_L4_argument_unpacking_done;
|
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|
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|
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|
{
|
|
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|
Py_ssize_t __pyx_temp;
|
|
@@ -9464,7 +9587,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_4Tree_22__hash__(CYTHO
|
|
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|
int __pyx_lineno = 0;
|
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__Pyx_RefNannySetupContext("__hash__",
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|
|
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|
*
|
|
@@ -9529,8 +9652,7 @@ static int __pyx_pw_7biotite_8sequence_5phylo_4tree_8TreeNode_1__cinit__(PyObjec
|
|
|
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|
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|
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|
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|
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|
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|
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__pyx_nargs = PyTuple_Size(__pyx_args);
|
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 430, __pyx_L3_error)
|
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+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return -1;
|
|
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|
#endif
|
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|
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|
|
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|
{
|
|
@@ -9593,10 +9715,11 @@ static int __pyx_pw_7biotite_8sequence_5phylo_4tree_8TreeNode_1__cinit__(PyObjec
|
|
|
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|
__pyx_v_distances = values[1];
|
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|
__pyx_v_index = values[2];
|
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|
}
|
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goto
|
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|
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|
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|
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|
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|
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|
{
|
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|
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|
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@@ -9651,7 +9774,7 @@ static int __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode___cinit__(struct _
|
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|
int __pyx_lineno = 0;
|
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|
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__Pyx_RefNannySetupContext("__cinit__",
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|
/* "biotite/sequence/phylo/tree.pyx":431
|
|
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|
*
|
|
@@ -9742,7 +9865,8 @@ static int __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode___cinit__(struct _
|
|
|
9742
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|
* raise TypeError(
|
|
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|
*/
|
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|
if (likely(PyList_CheckExact(__pyx_v_children)) || PyTuple_CheckExact(__pyx_v_children)) {
|
|
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|
-
__pyx_t_3 = __pyx_v_children; __Pyx_INCREF(__pyx_t_3);
|
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|
+
__pyx_t_3 = __pyx_v_children; __Pyx_INCREF(__pyx_t_3);
|
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__pyx_t_4 = 0;
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|
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|
} else {
|
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|
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|
|
@@ -9752,19 +9876,31 @@ static int __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode___cinit__(struct _
|
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|
for (;;) {
|
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|
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|
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|
if (likely(PyList_CheckExact(__pyx_t_3))) {
|
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|
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|
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|
+
{
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_3);
|
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|
+
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 444, __pyx_L1_error)
|
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#endif
|
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|
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if (__pyx_t_4 >= __pyx_temp) break;
|
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|
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}
|
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|
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|
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|
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|
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|
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|
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__pyx_t_6 =
|
|
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|
+
__pyx_t_6 = __Pyx_PySequence_ITEM(__pyx_t_3, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 444, __pyx_L1_error)
|
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__Pyx_GOTREF(__pyx_t_6);
|
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} else {
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|
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+
{
|
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Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_3);
|
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#if !CYTHON_ASSUME_SAFE_MACROS
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 444, __pyx_L1_error)
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+
#endif
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|
+
if (__pyx_t_4 >= __pyx_temp) break;
|
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+
}
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#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_4); __Pyx_INCREF(__pyx_t_6); __pyx_t_4++; if (unlikely((0 < 0))) __PYX_ERR(0, 444, __pyx_L1_error)
|
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#else
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__pyx_t_6 =
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+
__pyx_t_6 = __Pyx_PySequence_ITEM(__pyx_t_3, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 444, __pyx_L1_error)
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#endif
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|
}
|
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@@ -9868,7 +10004,8 @@ static int __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode___cinit__(struct _
|
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|
* raise TypeError(
|
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|
*/
|
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|
if (likely(PyList_CheckExact(__pyx_v_distances)) || PyTuple_CheckExact(__pyx_v_distances)) {
|
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-
__pyx_t_3 = __pyx_v_distances; __Pyx_INCREF(__pyx_t_3);
|
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+
__pyx_t_3 = __pyx_v_distances; __Pyx_INCREF(__pyx_t_3);
|
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+
__pyx_t_4 = 0;
|
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__pyx_t_5 = NULL;
|
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} else {
|
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|
__pyx_t_4 = -1; __pyx_t_3 = PyObject_GetIter(__pyx_v_distances); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 449, __pyx_L1_error)
|
|
@@ -9878,19 +10015,31 @@ static int __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode___cinit__(struct _
|
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|
for (;;) {
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if (likely(!__pyx_t_5)) {
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if (likely(PyList_CheckExact(__pyx_t_3))) {
|
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|
-
|
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+
{
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_3);
|
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|
+
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+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 449, __pyx_L1_error)
|
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+
#endif
|
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|
+
if (__pyx_t_4 >= __pyx_temp) break;
|
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|
+
}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_6 = PyList_GET_ITEM(__pyx_t_3, __pyx_t_4); __Pyx_INCREF(__pyx_t_6); __pyx_t_4++; if (unlikely((0 < 0))) __PYX_ERR(0, 449, __pyx_L1_error)
|
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#else
|
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-
__pyx_t_6 =
|
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+
__pyx_t_6 = __Pyx_PySequence_ITEM(__pyx_t_3, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 449, __pyx_L1_error)
|
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} else {
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-
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+
{
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+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_3);
|
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 449, __pyx_L1_error)
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#endif
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+
if (__pyx_t_4 >= __pyx_temp) break;
|
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|
+
}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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9891
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|
__pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_4); __Pyx_INCREF(__pyx_t_6); __pyx_t_4++; if (unlikely((0 < 0))) __PYX_ERR(0, 449, __pyx_L1_error)
|
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|
#else
|
|
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|
-
__pyx_t_6 =
|
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|
+
__pyx_t_6 = __Pyx_PySequence_ITEM(__pyx_t_3, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 449, __pyx_L1_error)
|
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|
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|
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|
#endif
|
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10045
|
}
|
|
@@ -10237,7 +10386,8 @@ static int __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode___cinit__(struct _
|
|
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10237
10386
|
__Pyx_GOTREF(__pyx_t_3);
|
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|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
|
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|
if (likely(PyList_CheckExact(__pyx_t_3)) || PyTuple_CheckExact(__pyx_t_3)) {
|
|
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|
-
__pyx_t_6 = __pyx_t_3; __Pyx_INCREF(__pyx_t_6);
|
|
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|
+
__pyx_t_6 = __pyx_t_3; __Pyx_INCREF(__pyx_t_6);
|
|
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|
+
__pyx_t_7 = 0;
|
|
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10391
|
__pyx_t_5 = NULL;
|
|
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|
} else {
|
|
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|
__pyx_t_7 = -1; __pyx_t_6 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 471, __pyx_L1_error)
|
|
@@ -10248,19 +10398,31 @@ static int __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode___cinit__(struct _
|
|
|
10248
10398
|
for (;;) {
|
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|
if (likely(!__pyx_t_5)) {
|
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|
if (likely(PyList_CheckExact(__pyx_t_6))) {
|
|
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|
-
|
|
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|
+
{
|
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_6);
|
|
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|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 471, __pyx_L1_error)
|
|
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|
+
#endif
|
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|
+
if (__pyx_t_7 >= __pyx_temp) break;
|
|
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|
+
}
|
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
10253
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|
__pyx_t_3 = PyList_GET_ITEM(__pyx_t_6, __pyx_t_7); __Pyx_INCREF(__pyx_t_3); __pyx_t_7++; if (unlikely((0 < 0))) __PYX_ERR(0, 471, __pyx_L1_error)
|
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|
#else
|
|
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|
-
__pyx_t_3 =
|
|
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|
+
__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_6, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 471, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_3);
|
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|
#endif
|
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|
} else {
|
|
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|
-
|
|
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|
+
{
|
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_6);
|
|
10417
|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 471, __pyx_L1_error)
|
|
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|
+
#endif
|
|
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|
+
if (__pyx_t_7 >= __pyx_temp) break;
|
|
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|
+
}
|
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
10261
10423
|
__pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_6, __pyx_t_7); __Pyx_INCREF(__pyx_t_3); __pyx_t_7++; if (unlikely((0 < 0))) __PYX_ERR(0, 471, __pyx_L1_error)
|
|
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10424
|
#else
|
|
10263
|
-
__pyx_t_3 =
|
|
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|
+
__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_6, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 471, __pyx_L1_error)
|
|
10264
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|
__Pyx_GOTREF(__pyx_t_3);
|
|
10265
10427
|
#endif
|
|
10266
10428
|
}
|
|
@@ -10552,8 +10714,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
10552
10714
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
10553
10715
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
10554
10716
|
#else
|
|
10555
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
10556
|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 484, __pyx_L3_error)
|
|
10717
|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
10557
10718
|
#endif
|
|
10558
10719
|
#endif
|
|
10559
10720
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -10602,10 +10763,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
10602
10763
|
__pyx_v_parent = ((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)values[0]);
|
|
10603
10764
|
__pyx_v_distance = __pyx_PyFloat_AsFloat(values[1]); if (unlikely((__pyx_v_distance == (float)-1) && PyErr_Occurred())) __PYX_ERR(0, 484, __pyx_L3_error)
|
|
10604
10765
|
}
|
|
10605
|
-
goto
|
|
10766
|
+
goto __pyx_L6_skip;
|
|
10606
10767
|
__pyx_L5_argtuple_error:;
|
|
10607
10768
|
__Pyx_RaiseArgtupleInvalid("_set_parent", 1, 2, 2, __pyx_nargs); __PYX_ERR(0, 484, __pyx_L3_error)
|
|
10608
|
-
|
|
10769
|
+
__pyx_L6_skip:;
|
|
10770
|
+
goto __pyx_L4_argument_unpacking_done;
|
|
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10771
|
__pyx_L3_error:;
|
|
10610
10772
|
{
|
|
10611
10773
|
Py_ssize_t __pyx_temp;
|
|
@@ -10647,7 +10809,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_2_set_parent
|
|
|
10647
10809
|
int __pyx_lineno = 0;
|
|
10648
10810
|
const char *__pyx_filename = NULL;
|
|
10649
10811
|
int __pyx_clineno = 0;
|
|
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|
-
__Pyx_RefNannySetupContext("_set_parent",
|
|
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|
+
__Pyx_RefNannySetupContext("_set_parent", 1);
|
|
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10813
|
|
|
10652
10814
|
/* "biotite/sequence/phylo/tree.pyx":485
|
|
10653
10815
|
*
|
|
@@ -10784,9 +10946,6 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
10784
10946
|
CYTHON_UNUSED Py_ssize_t __pyx_nargs;
|
|
10785
10947
|
#endif
|
|
10786
10948
|
CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
|
|
10787
|
-
int __pyx_lineno = 0;
|
|
10788
|
-
const char *__pyx_filename = NULL;
|
|
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|
-
int __pyx_clineno = 0;
|
|
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|
PyObject *__pyx_r = 0;
|
|
10791
10950
|
__Pyx_RefNannyDeclarations
|
|
10792
10951
|
__Pyx_RefNannySetupContext("copy (wrapper)", 0);
|
|
@@ -10794,21 +10953,13 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
10794
10953
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
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10954
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
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10955
|
#else
|
|
10797
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
10798
|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 490, __pyx_L3_error)
|
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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10957
|
#endif
|
|
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10958
|
#endif
|
|
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10959
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
10802
10960
|
if (unlikely(__pyx_nargs > 0)) {
|
|
10803
10961
|
__Pyx_RaiseArgtupleInvalid("copy", 1, 0, 0, __pyx_nargs); return NULL;}
|
|
10804
10962
|
if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "copy", 0))) return NULL;
|
|
10805
|
-
goto __pyx_L4_argument_unpacking_done;
|
|
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|
-
goto __pyx_L3_error;
|
|
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|
-
__pyx_L3_error:;
|
|
10808
|
-
__Pyx_AddTraceback("biotite.sequence.phylo.tree.TreeNode.copy", __pyx_clineno, __pyx_lineno, __pyx_filename);
|
|
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|
-
__Pyx_RefNannyFinishContext();
|
|
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|
-
return NULL;
|
|
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|
-
__pyx_L4_argument_unpacking_done:;
|
|
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|
__pyx_r = __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_4copy(((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)__pyx_v_self));
|
|
10813
10964
|
|
|
10814
10965
|
/* function exit code */
|
|
@@ -10834,7 +10985,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_4copy(struct
|
|
|
10834
10985
|
int __pyx_lineno = 0;
|
|
10835
10986
|
const char *__pyx_filename = NULL;
|
|
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|
int __pyx_clineno = 0;
|
|
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|
-
__Pyx_RefNannySetupContext("copy",
|
|
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|
+
__Pyx_RefNannySetupContext("copy", 1);
|
|
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|
|
|
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|
/* "biotite/sequence/phylo/tree.pyx":500
|
|
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10991
|
* The parent node and the distance to it is not included.
|
|
@@ -10860,7 +11011,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_4copy(struct
|
|
|
10860
11011
|
}
|
|
10861
11012
|
#endif
|
|
10862
11013
|
{
|
|
10863
|
-
PyObject *__pyx_callargs[
|
|
11014
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL};
|
|
10864
11015
|
__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
|
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|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
10866
11017
|
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 500, __pyx_L1_error)
|
|
@@ -10916,13 +11067,20 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_4copy(struct
|
|
|
10916
11067
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
|
10917
11068
|
__PYX_ERR(0, 503, __pyx_L6_error)
|
|
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|
}
|
|
10919
|
-
__pyx_t_1 = __pyx_v_self->_children; __Pyx_INCREF(__pyx_t_1);
|
|
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|
+
__pyx_t_1 = __pyx_v_self->_children; __Pyx_INCREF(__pyx_t_1);
|
|
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|
+
__pyx_t_6 = 0;
|
|
10920
11072
|
for (;;) {
|
|
10921
|
-
|
|
11073
|
+
{
|
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_1);
|
|
11075
|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 503, __pyx_L6_error)
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|
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|
+
if (__pyx_t_6 >= __pyx_temp) break;
|
|
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|
+
}
|
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
10923
11081
|
__pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_6); __Pyx_INCREF(__pyx_t_3); __pyx_t_6++; if (unlikely((0 < 0))) __PYX_ERR(0, 503, __pyx_L6_error)
|
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10924
11082
|
#else
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10925
|
-
__pyx_t_3 =
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|
11083
|
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__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_1, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 503, __pyx_L6_error)
|
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10926
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|
__Pyx_GOTREF(__pyx_t_3);
|
|
10927
11085
|
#endif
|
|
10928
11086
|
__Pyx_XDECREF_SET(__pyx_8genexpr2__pyx_v_child, __pyx_t_3);
|
|
@@ -10957,13 +11115,20 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_4copy(struct
|
|
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|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
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|
__PYX_ERR(0, 504, __pyx_L13_error)
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}
|
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|
-
__pyx_t_1 = __pyx_v_self->_children; __Pyx_INCREF(__pyx_t_1);
|
|
11118
|
+
__pyx_t_1 = __pyx_v_self->_children; __Pyx_INCREF(__pyx_t_1);
|
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__pyx_t_6 = 0;
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|
for (;;) {
|
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|
+
{
|
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|
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Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_1);
|
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|
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#if !CYTHON_ASSUME_SAFE_MACROS
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 504, __pyx_L13_error)
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|
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#endif
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|
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if (__pyx_t_6 >= __pyx_temp) break;
|
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|
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}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_6); __Pyx_INCREF(__pyx_t_3); __pyx_t_6++; if (unlikely((0 < 0))) __PYX_ERR(0, 504, __pyx_L13_error)
|
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|
#else
|
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|
-
__pyx_t_3 =
|
|
11131
|
+
__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_1, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 504, __pyx_L13_error)
|
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|
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|
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|
#endif
|
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|
__Pyx_XDECREF_SET(__pyx_8genexpr3__pyx_v_child, __pyx_t_3);
|
|
@@ -10985,7 +11150,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_4copy(struct
|
|
|
10985
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|
}
|
|
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|
#endif
|
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|
{
|
|
10988
|
-
PyObject *__pyx_callargs[
|
|
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|
+
PyObject *__pyx_callargs[2] = {__pyx_t_8, NULL};
|
|
10989
11154
|
__pyx_t_3 = __Pyx_PyObject_FastCall(__pyx_t_7, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
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|
__Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0;
|
|
10991
11156
|
if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 504, __pyx_L13_error)
|
|
@@ -11089,7 +11254,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_5index___get
|
|
|
11089
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|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
|
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|
int __pyx_clineno = 0;
|
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|
-
__Pyx_RefNannySetupContext("__get__",
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|
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__Pyx_RefNannySetupContext("__get__", 1);
|
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|
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|
/* "biotite/sequence/phylo/tree.pyx":509
|
|
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11260
|
* @property
|
|
@@ -11159,7 +11324,7 @@ static PyObject *__pyx_pw_7biotite_8sequence_5phylo_4tree_8TreeNode_8children_1_
|
|
|
11159
11324
|
static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_8children___get__(struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *__pyx_v_self) {
|
|
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11325
|
PyObject *__pyx_r = NULL;
|
|
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|
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|
|
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|
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__Pyx_RefNannySetupContext("__get__",
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|
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|
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|
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|
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|
/* "biotite/sequence/phylo/tree.pyx":513
|
|
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11330
|
* @property
|
|
@@ -11214,7 +11379,7 @@ static PyObject *__pyx_pw_7biotite_8sequence_5phylo_4tree_8TreeNode_6parent_1__g
|
|
|
11214
11379
|
static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_6parent___get__(struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *__pyx_v_self) {
|
|
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|
PyObject *__pyx_r = NULL;
|
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|
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|
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__Pyx_RefNannySetupContext("__get__",
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|
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|
/* "biotite/sequence/phylo/tree.pyx":517
|
|
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11385
|
* @property
|
|
@@ -11275,7 +11440,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_8distance___
|
|
|
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11440
|
int __pyx_lineno = 0;
|
|
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|
const char *__pyx_filename = NULL;
|
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|
int __pyx_clineno = 0;
|
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|
-
__Pyx_RefNannySetupContext("__get__",
|
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|
+
__Pyx_RefNannySetupContext("__get__", 1);
|
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|
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|
/* "biotite/sequence/phylo/tree.pyx":521
|
|
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11446
|
* @property
|
|
@@ -11348,9 +11513,6 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
11348
11513
|
CYTHON_UNUSED Py_ssize_t __pyx_nargs;
|
|
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|
#endif
|
|
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11515
|
CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
|
|
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|
-
int __pyx_lineno = 0;
|
|
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|
-
const char *__pyx_filename = NULL;
|
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|
-
int __pyx_clineno = 0;
|
|
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|
PyObject *__pyx_r = 0;
|
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|
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|
__Pyx_RefNannySetupContext("is_leaf (wrapper)", 0);
|
|
@@ -11358,21 +11520,13 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
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|
#if CYTHON_ASSUME_SAFE_MACROS
|
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|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
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|
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|
|
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|
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__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
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|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 523, __pyx_L3_error)
|
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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|
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|
|
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|
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|
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
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|
if (unlikely(__pyx_nargs > 0)) {
|
|
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|
__Pyx_RaiseArgtupleInvalid("is_leaf", 1, 0, 0, __pyx_nargs); return NULL;}
|
|
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|
if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "is_leaf", 0))) return NULL;
|
|
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|
-
goto __pyx_L4_argument_unpacking_done;
|
|
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|
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goto __pyx_L3_error;
|
|
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|
-
__pyx_L3_error:;
|
|
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|
-
__Pyx_AddTraceback("biotite.sequence.phylo.tree.TreeNode.is_leaf", __pyx_clineno, __pyx_lineno, __pyx_filename);
|
|
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|
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__Pyx_RefNannyFinishContext();
|
|
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|
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return NULL;
|
|
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|
-
__pyx_L4_argument_unpacking_done:;
|
|
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|
__pyx_r = __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_6is_leaf(((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)__pyx_v_self));
|
|
11377
11531
|
|
|
11378
11532
|
/* function exit code */
|
|
@@ -11385,7 +11539,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_6is_leaf(str
|
|
|
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|
__Pyx_RefNannyDeclarations
|
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|
PyObject *__pyx_t_1 = NULL;
|
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|
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|
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|
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__Pyx_RefNannySetupContext("is_leaf",
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|
+
__Pyx_RefNannySetupContext("is_leaf", 1);
|
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|
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|
/* "biotite/sequence/phylo/tree.pyx":534
|
|
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11545
|
* True if the node is a leaf node, false otherwise.
|
|
@@ -11451,9 +11605,6 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
11451
11605
|
CYTHON_UNUSED Py_ssize_t __pyx_nargs;
|
|
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11606
|
#endif
|
|
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11607
|
CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
|
|
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|
-
int __pyx_lineno = 0;
|
|
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|
-
const char *__pyx_filename = NULL;
|
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|
-
int __pyx_clineno = 0;
|
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|
PyObject *__pyx_r = 0;
|
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|
__Pyx_RefNannyDeclarations
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|
__Pyx_RefNannySetupContext("is_root (wrapper)", 0);
|
|
@@ -11461,21 +11612,13 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
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|
#if CYTHON_ASSUME_SAFE_MACROS
|
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|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
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|
#else
|
|
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|
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__pyx_nargs = PyTuple_Size(__pyx_args);
|
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|
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 536, __pyx_L3_error)
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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|
#endif
|
|
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|
#endif
|
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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|
if (unlikely(__pyx_nargs > 0)) {
|
|
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|
__Pyx_RaiseArgtupleInvalid("is_root", 1, 0, 0, __pyx_nargs); return NULL;}
|
|
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11621
|
if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "is_root", 0))) return NULL;
|
|
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|
-
goto __pyx_L4_argument_unpacking_done;
|
|
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|
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goto __pyx_L3_error;
|
|
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|
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__pyx_L3_error:;
|
|
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|
-
__Pyx_AddTraceback("biotite.sequence.phylo.tree.TreeNode.is_root", __pyx_clineno, __pyx_lineno, __pyx_filename);
|
|
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|
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__Pyx_RefNannyFinishContext();
|
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|
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return NULL;
|
|
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|
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__pyx_L4_argument_unpacking_done:;
|
|
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|
__pyx_r = __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_8is_root(((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)__pyx_v_self));
|
|
11480
11623
|
|
|
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11624
|
/* function exit code */
|
|
@@ -11491,7 +11634,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_8is_root(str
|
|
|
11491
11634
|
int __pyx_lineno = 0;
|
|
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|
const char *__pyx_filename = NULL;
|
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|
int __pyx_clineno = 0;
|
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|
-
__Pyx_RefNannySetupContext("is_root",
|
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|
+
__Pyx_RefNannySetupContext("is_root", 1);
|
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|
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|
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|
/* "biotite/sequence/phylo/tree.pyx":547
|
|
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11640
|
* True if the node is a root node, false otherwise.
|
|
@@ -11556,9 +11699,6 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
11556
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|
CYTHON_UNUSED Py_ssize_t __pyx_nargs;
|
|
11557
11700
|
#endif
|
|
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11701
|
CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
|
|
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|
-
int __pyx_lineno = 0;
|
|
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|
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const char *__pyx_filename = NULL;
|
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|
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int __pyx_clineno = 0;
|
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|
PyObject *__pyx_r = 0;
|
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|
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|
|
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|
__Pyx_RefNannySetupContext("as_root (wrapper)", 0);
|
|
@@ -11566,21 +11706,13 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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|
#if CYTHON_ASSUME_SAFE_MACROS
|
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|
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|
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|
#else
|
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|
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__pyx_nargs = PyTuple_Size(__pyx_args);
|
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|
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 549, __pyx_L3_error)
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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|
#endif
|
|
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|
#endif
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
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11713
|
if (unlikely(__pyx_nargs > 0)) {
|
|
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|
__Pyx_RaiseArgtupleInvalid("as_root", 1, 0, 0, __pyx_nargs); return NULL;}
|
|
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11715
|
if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "as_root", 0))) return NULL;
|
|
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|
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goto __pyx_L4_argument_unpacking_done;
|
|
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|
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goto __pyx_L3_error;
|
|
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|
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__pyx_L3_error:;
|
|
11580
|
-
__Pyx_AddTraceback("biotite.sequence.phylo.tree.TreeNode.as_root", __pyx_clineno, __pyx_lineno, __pyx_filename);
|
|
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|
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__Pyx_RefNannyFinishContext();
|
|
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|
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return NULL;
|
|
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|
-
__pyx_L4_argument_unpacking_done:;
|
|
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|
__pyx_r = __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_10as_root(((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)__pyx_v_self));
|
|
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11717
|
|
|
11586
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|
/* function exit code */
|
|
@@ -11599,7 +11731,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_10as_root(st
|
|
|
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|
int __pyx_lineno = 0;
|
|
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|
const char *__pyx_filename = NULL;
|
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|
int __pyx_clineno = 0;
|
|
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|
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__Pyx_RefNannySetupContext("as_root",
|
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|
+
__Pyx_RefNannySetupContext("as_root", 1);
|
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|
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|
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|
/* "biotite/sequence/phylo/tree.pyx":559
|
|
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11737
|
* raised.
|
|
@@ -11729,8 +11861,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
11729
11861
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
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11862
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
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11863
|
#else
|
|
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|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
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|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 563, __pyx_L3_error)
|
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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|
#endif
|
|
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|
#endif
|
|
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11867
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -11783,10 +11914,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
11783
11914
|
__pyx_v_topological = ((int)0);
|
|
11784
11915
|
}
|
|
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11916
|
}
|
|
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|
-
goto
|
|
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|
+
goto __pyx_L6_skip;
|
|
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11918
|
__pyx_L5_argtuple_error:;
|
|
11788
11919
|
__Pyx_RaiseArgtupleInvalid("distance_to", 0, 1, 2, __pyx_nargs); __PYX_ERR(0, 563, __pyx_L3_error)
|
|
11789
|
-
|
|
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|
+
__pyx_L6_skip:;
|
|
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|
+
goto __pyx_L4_argument_unpacking_done;
|
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11922
|
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|
|
11791
11923
|
{
|
|
11792
11924
|
Py_ssize_t __pyx_temp;
|
|
@@ -11830,7 +11962,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_12distance_t
|
|
|
11830
11962
|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
|
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|
int __pyx_clineno = 0;
|
|
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|
-
__Pyx_RefNannySetupContext("distance_to",
|
|
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|
+
__Pyx_RefNannySetupContext("distance_to", 1);
|
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|
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|
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|
/* "biotite/sequence/phylo/tree.pyx":602
|
|
11836
11968
|
* """
|
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@@ -12166,8 +12298,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
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__pyx_nargs = PyTuple_Size(__pyx_args);
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 623, __pyx_L3_error)
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
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__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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@@ -12202,10 +12333,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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}
|
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|
__pyx_v_node = ((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)values[0]);
|
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|
}
|
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goto
|
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goto __pyx_L6_skip;
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goto __pyx_L4_argument_unpacking_done;
|
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{
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|
Py_ssize_t __pyx_temp;
|
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@@ -12252,7 +12384,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_14lowest_com
|
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|
int __pyx_lineno = 0;
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|
const char *__pyx_filename = NULL;
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int __pyx_clineno = 0;
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__Pyx_RefNannySetupContext("lowest_common_ancestor",
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__Pyx_RefNannySetupContext("lowest_common_ancestor", 1);
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/* "biotite/sequence/phylo/tree.pyx":641
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* """
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@@ -12445,9 +12577,6 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
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CYTHON_UNUSED Py_ssize_t __pyx_nargs;
|
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CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
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int __pyx_lineno = 0;
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const char *__pyx_filename = NULL;
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int __pyx_clineno = 0;
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__Pyx_RefNannyDeclarations
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__Pyx_RefNannySetupContext("get_indices (wrapper)", 0);
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@@ -12455,21 +12584,13 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
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if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 657, __pyx_L3_error)
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
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__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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if (unlikely(__pyx_nargs > 0)) {
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__Pyx_RaiseArgtupleInvalid("get_indices", 1, 0, 0, __pyx_nargs); return NULL;}
|
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if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "get_indices", 0))) return NULL;
|
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goto __pyx_L4_argument_unpacking_done;
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goto __pyx_L3_error;
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__Pyx_AddTraceback("biotite.sequence.phylo.tree.TreeNode.get_indices", __pyx_clineno, __pyx_lineno, __pyx_filename);
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__pyx_r = __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_16get_indices(((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)__pyx_v_self));
|
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/* function exit code */
|
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@@ -12492,7 +12613,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_16get_indice
|
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int __pyx_lineno = 0;
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int __pyx_clineno = 0;
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__Pyx_RefNannySetupContext("get_indices",
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/* "biotite/sequence/phylo/tree.pyx":695
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* """
|
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@@ -12535,7 +12656,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_16get_indice
|
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PyObject *__pyx_callargs[
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|
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@@ -12543,7 +12664,8 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_16get_indice
|
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__pyx_t_4 = __pyx_t_3; __Pyx_INCREF(__pyx_t_4);
|
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} else {
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@@ -12554,19 +12676,31 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_16get_indice
|
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for (;;) {
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-
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{
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Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_4);
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__pyx_t_3 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_7); __Pyx_INCREF(__pyx_t_3); __pyx_t_7++; if (unlikely((0 < 0))) __PYX_ERR(0, 696, __pyx_L5_error)
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__pyx_t_3 =
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__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_4, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 696, __pyx_L5_error)
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|
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+
{
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_4);
|
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|
+
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 696, __pyx_L5_error)
|
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+
#endif
|
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|
+
if (__pyx_t_7 >= __pyx_temp) break;
|
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+
}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_7); __Pyx_INCREF(__pyx_t_3); __pyx_t_7++; if (unlikely((0 < 0))) __PYX_ERR(0, 696, __pyx_L5_error)
|
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|
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|
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__pyx_t_3 =
|
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|
+
__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_4, __pyx_t_7); __pyx_t_7++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 696, __pyx_L5_error)
|
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|
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|
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|
#endif
|
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|
}
|
|
@@ -12698,9 +12832,6 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
12698
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|
CYTHON_UNUSED Py_ssize_t __pyx_nargs;
|
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|
#endif
|
|
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|
CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
|
|
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|
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int __pyx_lineno = 0;
|
|
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|
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const char *__pyx_filename = NULL;
|
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|
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int __pyx_clineno = 0;
|
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|
PyObject *__pyx_r = 0;
|
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|
__Pyx_RefNannyDeclarations
|
|
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12837
|
__Pyx_RefNannySetupContext("get_leaves (wrapper)", 0);
|
|
@@ -12708,21 +12839,13 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
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12839
|
#if CYTHON_ASSUME_SAFE_MACROS
|
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12840
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
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12841
|
#else
|
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12711
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
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|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 699, __pyx_L3_error)
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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|
#endif
|
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|
#endif
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
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12846
|
if (unlikely(__pyx_nargs > 0)) {
|
|
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|
__Pyx_RaiseArgtupleInvalid("get_leaves", 1, 0, 0, __pyx_nargs); return NULL;}
|
|
12718
12848
|
if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "get_leaves", 0))) return NULL;
|
|
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|
-
goto __pyx_L4_argument_unpacking_done;
|
|
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|
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goto __pyx_L3_error;
|
|
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|
-
__pyx_L3_error:;
|
|
12722
|
-
__Pyx_AddTraceback("biotite.sequence.phylo.tree.TreeNode.get_leaves", __pyx_clineno, __pyx_lineno, __pyx_filename);
|
|
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|
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__Pyx_RefNannyFinishContext();
|
|
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|
-
return NULL;
|
|
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|
-
__pyx_L4_argument_unpacking_done:;
|
|
12726
12849
|
__pyx_r = __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_18get_leaves(((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)__pyx_v_self));
|
|
12727
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|
|
|
12728
12851
|
/* function exit code */
|
|
@@ -12738,7 +12861,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_18get_leaves
|
|
|
12738
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|
int __pyx_lineno = 0;
|
|
12739
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|
const char *__pyx_filename = NULL;
|
|
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|
int __pyx_clineno = 0;
|
|
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|
-
__Pyx_RefNannySetupContext("get_leaves",
|
|
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|
+
__Pyx_RefNannySetupContext("get_leaves", 1);
|
|
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|
|
|
12743
12866
|
/* "biotite/sequence/phylo/tree.pyx":717
|
|
12744
12867
|
* of this node.
|
|
@@ -12824,9 +12947,6 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
12824
12947
|
CYTHON_UNUSED Py_ssize_t __pyx_nargs;
|
|
12825
12948
|
#endif
|
|
12826
12949
|
CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
|
|
12827
|
-
int __pyx_lineno = 0;
|
|
12828
|
-
const char *__pyx_filename = NULL;
|
|
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|
-
int __pyx_clineno = 0;
|
|
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|
PyObject *__pyx_r = 0;
|
|
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12951
|
__Pyx_RefNannyDeclarations
|
|
12832
12952
|
__Pyx_RefNannySetupContext("get_leaf_count (wrapper)", 0);
|
|
@@ -12834,21 +12954,13 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
12834
12954
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
12835
12955
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
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|
#else
|
|
12837
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
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|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 723, __pyx_L3_error)
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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|
#endif
|
|
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|
#endif
|
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
12842
12961
|
if (unlikely(__pyx_nargs > 0)) {
|
|
12843
12962
|
__Pyx_RaiseArgtupleInvalid("get_leaf_count", 1, 0, 0, __pyx_nargs); return NULL;}
|
|
12844
12963
|
if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "get_leaf_count", 0))) return NULL;
|
|
12845
|
-
goto __pyx_L4_argument_unpacking_done;
|
|
12846
|
-
goto __pyx_L3_error;
|
|
12847
|
-
__pyx_L3_error:;
|
|
12848
|
-
__Pyx_AddTraceback("biotite.sequence.phylo.tree.TreeNode.get_leaf_count", __pyx_clineno, __pyx_lineno, __pyx_filename);
|
|
12849
|
-
__Pyx_RefNannyFinishContext();
|
|
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|
-
return NULL;
|
|
12851
|
-
__pyx_L4_argument_unpacking_done:;
|
|
12852
12964
|
__pyx_r = __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_20get_leaf_count(((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)__pyx_v_self));
|
|
12853
12965
|
|
|
12854
12966
|
/* function exit code */
|
|
@@ -12864,7 +12976,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_20get_leaf_c
|
|
|
12864
12976
|
int __pyx_lineno = 0;
|
|
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|
const char *__pyx_filename = NULL;
|
|
12866
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|
int __pyx_clineno = 0;
|
|
12867
|
-
__Pyx_RefNannySetupContext("get_leaf_count",
|
|
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|
+
__Pyx_RefNannySetupContext("get_leaf_count", 1);
|
|
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|
|
|
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|
/* "biotite/sequence/phylo/tree.pyx":733
|
|
12870
12982
|
* If this node is a leaf node itself, 1 is returned.
|
|
@@ -12943,8 +13055,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
12943
13055
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
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13056
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
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13057
|
#else
|
|
12946
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
12947
|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 735, __pyx_L3_error)
|
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
12948
13059
|
#endif
|
|
12949
13060
|
#endif
|
|
12950
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -13027,10 +13138,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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13027
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|
}
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13028
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|
__pyx_v_round_distance = values[2];
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13140
|
}
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-
goto
|
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+
goto __pyx_L6_skip;
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|
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__Pyx_RaiseArgtupleInvalid("to_newick", 0, 0, 3, __pyx_nargs); __PYX_ERR(0, 735, __pyx_L3_error)
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-
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+
__pyx_L6_skip:;
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+
goto __pyx_L4_argument_unpacking_done;
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|
{
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|
Py_ssize_t __pyx_temp;
|
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@@ -13080,7 +13192,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_22to_newick(
|
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13192
|
int __pyx_lineno = 0;
|
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13081
13193
|
const char *__pyx_filename = NULL;
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int __pyx_clineno = 0;
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-
__Pyx_RefNannySetupContext("to_newick",
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__Pyx_RefNannySetupContext("to_newick", 1);
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|
/* "biotite/sequence/phylo/tree.pyx":776
|
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13198
|
* ((foo,bar),foobar)
|
|
@@ -13106,7 +13218,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_22to_newick(
|
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13106
13218
|
}
|
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|
#endif
|
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|
{
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-
PyObject *__pyx_callargs[
|
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|
+
PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL};
|
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13222
|
__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
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|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
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|
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 776, __pyx_L1_error)
|
|
@@ -13135,7 +13247,8 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_22to_newick(
|
|
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13135
13247
|
* # Characters that are part of the Newick syntax
|
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|
*/
|
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|
if (likely(PyList_CheckExact(__pyx_v_labels)) || PyTuple_CheckExact(__pyx_v_labels)) {
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-
__pyx_t_1 = __pyx_v_labels; __Pyx_INCREF(__pyx_t_1);
|
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+
__pyx_t_1 = __pyx_v_labels; __Pyx_INCREF(__pyx_t_1);
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__pyx_t_6 = 0;
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|
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|
} else {
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|
__pyx_t_6 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_v_labels); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 778, __pyx_L1_error)
|
|
@@ -13145,19 +13258,31 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_22to_newick(
|
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|
for (;;) {
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|
if (likely(!__pyx_t_7)) {
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|
if (likely(PyList_CheckExact(__pyx_t_1))) {
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-
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+
{
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+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_1);
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#if !CYTHON_ASSUME_SAFE_MACROS
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 778, __pyx_L1_error)
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#endif
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+
if (__pyx_t_6 >= __pyx_temp) break;
|
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|
+
}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
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|
__pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_6); __Pyx_INCREF(__pyx_t_2); __pyx_t_6++; if (unlikely((0 < 0))) __PYX_ERR(0, 778, __pyx_L1_error)
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#else
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__pyx_t_2 =
|
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+
__pyx_t_2 = __Pyx_PySequence_ITEM(__pyx_t_1, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 778, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_2);
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|
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|
} else {
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-
|
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+
{
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_1);
|
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+
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 778, __pyx_L1_error)
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|
+
#endif
|
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|
+
if (__pyx_t_6 >= __pyx_temp) break;
|
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|
+
}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_6); __Pyx_INCREF(__pyx_t_2); __pyx_t_6++; if (unlikely((0 < 0))) __PYX_ERR(0, 778, __pyx_L1_error)
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|
#else
|
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-
__pyx_t_2 =
|
|
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|
+
__pyx_t_2 = __Pyx_PySequence_ITEM(__pyx_t_1, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 778, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_2);
|
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|
#endif
|
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|
}
|
|
@@ -13222,13 +13347,20 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_22to_newick(
|
|
|
13222
13347
|
* if char in label:
|
|
13223
13348
|
* raise ValueError(
|
|
13224
13349
|
*/
|
|
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|
-
__pyx_t_2 = __pyx_v_illegal_chars; __Pyx_INCREF(__pyx_t_2);
|
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|
+
__pyx_t_2 = __pyx_v_illegal_chars; __Pyx_INCREF(__pyx_t_2);
|
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|
+
__pyx_t_8 = 0;
|
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|
for (;;) {
|
|
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|
-
|
|
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|
+
{
|
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_2);
|
|
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|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 783, __pyx_L1_error)
|
|
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|
+
#endif
|
|
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|
+
if (__pyx_t_8 >= __pyx_temp) break;
|
|
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|
+
}
|
|
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13360
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
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|
__pyx_t_3 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_8); __Pyx_INCREF(__pyx_t_3); __pyx_t_8++; if (unlikely((0 < 0))) __PYX_ERR(0, 783, __pyx_L1_error)
|
|
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13362
|
#else
|
|
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|
-
__pyx_t_3 =
|
|
13363
|
+
__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_2, __pyx_t_8); __pyx_t_8++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 783, __pyx_L1_error)
|
|
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13364
|
__Pyx_GOTREF(__pyx_t_3);
|
|
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13365
|
#endif
|
|
13234
13366
|
__Pyx_XDECREF_SET(__pyx_v_char, __pyx_t_3);
|
|
@@ -13565,13 +13697,20 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_22to_newick(
|
|
|
13565
13697
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
|
13566
13698
|
__PYX_ERR(0, 802, __pyx_L16_error)
|
|
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13699
|
}
|
|
13568
|
-
__pyx_t_3 = __pyx_v_self->_children; __Pyx_INCREF(__pyx_t_3);
|
|
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|
+
__pyx_t_3 = __pyx_v_self->_children; __Pyx_INCREF(__pyx_t_3);
|
|
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|
+
__pyx_t_6 = 0;
|
|
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13702
|
for (;;) {
|
|
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|
-
|
|
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|
+
{
|
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_3);
|
|
13705
|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 802, __pyx_L16_error)
|
|
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|
+
#endif
|
|
13708
|
+
if (__pyx_t_6 >= __pyx_temp) break;
|
|
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|
+
}
|
|
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13710
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
13572
13711
|
__pyx_t_11 = PyTuple_GET_ITEM(__pyx_t_3, __pyx_t_6); __Pyx_INCREF(__pyx_t_11); __pyx_t_6++; if (unlikely((0 < 0))) __PYX_ERR(0, 802, __pyx_L16_error)
|
|
13573
13712
|
#else
|
|
13574
|
-
__pyx_t_11 =
|
|
13713
|
+
__pyx_t_11 = __Pyx_PySequence_ITEM(__pyx_t_3, __pyx_t_6); __pyx_t_6++; if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 802, __pyx_L16_error)
|
|
13575
13714
|
__Pyx_GOTREF(__pyx_t_11);
|
|
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13715
|
#endif
|
|
13577
13716
|
__Pyx_XDECREF_SET(__pyx_8genexpr5__pyx_v_child, __pyx_t_11);
|
|
@@ -13923,8 +14062,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
13923
14062
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
13924
14063
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
13925
14064
|
#else
|
|
13926
|
-
__pyx_nargs = PyTuple_Size(__pyx_args);
|
|
13927
|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 814, __pyx_L3_error)
|
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
13928
14066
|
#endif
|
|
13929
14067
|
#endif
|
|
13930
14068
|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -13982,10 +14120,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
13982
14120
|
__pyx_v_newick = ((PyObject*)values[0]);
|
|
13983
14121
|
__pyx_v_labels = ((PyObject*)values[1]);
|
|
13984
14122
|
}
|
|
13985
|
-
goto
|
|
14123
|
+
goto __pyx_L6_skip;
|
|
13986
14124
|
__pyx_L5_argtuple_error:;
|
|
13987
14125
|
__Pyx_RaiseArgtupleInvalid("from_newick", 0, 1, 2, __pyx_nargs); __PYX_ERR(0, 814, __pyx_L3_error)
|
|
13988
|
-
|
|
14126
|
+
__pyx_L6_skip:;
|
|
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|
+
goto __pyx_L4_argument_unpacking_done;
|
|
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14128
|
__pyx_L3_error:;
|
|
13990
14129
|
{
|
|
13991
14130
|
Py_ssize_t __pyx_temp;
|
|
@@ -15127,13 +15266,20 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_24from_newic
|
|
|
15127
15266
|
* # (A,B),(C,D),(E,F)
|
|
15128
15267
|
*/
|
|
15129
15268
|
__pyx_t_5 = 0;
|
|
15130
|
-
__pyx_t_8 = __pyx_v_comma_pos; __Pyx_INCREF(__pyx_t_8);
|
|
15269
|
+
__pyx_t_8 = __pyx_v_comma_pos; __Pyx_INCREF(__pyx_t_8);
|
|
15270
|
+
__pyx_t_4 = 0;
|
|
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|
for (;;) {
|
|
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|
-
|
|
15272
|
+
{
|
|
15273
|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_8);
|
|
15274
|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
15275
|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 937, __pyx_L1_error)
|
|
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|
+
#endif
|
|
15277
|
+
if (__pyx_t_4 >= __pyx_temp) break;
|
|
15278
|
+
}
|
|
15133
15279
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
15134
15280
|
__pyx_t_2 = PyList_GET_ITEM(__pyx_t_8, __pyx_t_4); __Pyx_INCREF(__pyx_t_2); __pyx_t_4++; if (unlikely((0 < 0))) __PYX_ERR(0, 937, __pyx_L1_error)
|
|
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15281
|
#else
|
|
15136
|
-
__pyx_t_2 =
|
|
15282
|
+
__pyx_t_2 = __Pyx_PySequence_ITEM(__pyx_t_8, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 937, __pyx_L1_error)
|
|
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|
__Pyx_GOTREF(__pyx_t_2);
|
|
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15284
|
#endif
|
|
15139
15285
|
__pyx_t_9 = __Pyx_PyInt_As_int(__pyx_t_2); if (unlikely((__pyx_t_9 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 937, __pyx_L1_error)
|
|
@@ -15783,7 +15929,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_26__str__(st
|
|
|
15783
15929
|
int __pyx_lineno = 0;
|
|
15784
15930
|
const char *__pyx_filename = NULL;
|
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15931
|
int __pyx_clineno = 0;
|
|
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|
-
__Pyx_RefNannySetupContext("__str__",
|
|
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|
+
__Pyx_RefNannySetupContext("__str__", 1);
|
|
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|
|
|
15788
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|
/* "biotite/sequence/phylo/tree.pyx":970
|
|
15789
15935
|
*
|
|
@@ -15810,7 +15956,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_26__str__(st
|
|
|
15810
15956
|
}
|
|
15811
15957
|
#endif
|
|
15812
15958
|
{
|
|
15813
|
-
PyObject *__pyx_callargs[
|
|
15959
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_3, NULL};
|
|
15814
15960
|
__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
|
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15961
|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
15816
15962
|
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 970, __pyx_L1_error)
|
|
@@ -15877,7 +16023,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_28__eq__(str
|
|
|
15877
16023
|
int __pyx_lineno = 0;
|
|
15878
16024
|
const char *__pyx_filename = NULL;
|
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|
int __pyx_clineno = 0;
|
|
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|
-
__Pyx_RefNannySetupContext("__eq__",
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|
+
__Pyx_RefNannySetupContext("__eq__", 1);
|
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|
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|
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16028
|
/* "biotite/sequence/phylo/tree.pyx":973
|
|
15883
16029
|
*
|
|
@@ -16117,7 +16263,7 @@ static Py_hash_t __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_30__hash__(s
|
|
|
16117
16263
|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
|
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|
int __pyx_clineno = 0;
|
|
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|
-
__Pyx_RefNannySetupContext("__hash__",
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|
+
__Pyx_RefNannySetupContext("__hash__", 1);
|
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|
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|
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16268
|
/* "biotite/sequence/phylo/tree.pyx":989
|
|
16123
16269
|
* # Order of children is not important -> set
|
|
@@ -16230,9 +16376,6 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
16230
16376
|
CYTHON_UNUSED Py_ssize_t __pyx_nargs;
|
|
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16377
|
#endif
|
|
16232
16378
|
CYTHON_UNUSED PyObject *const *__pyx_kwvalues;
|
|
16233
|
-
int __pyx_lineno = 0;
|
|
16234
|
-
const char *__pyx_filename = NULL;
|
|
16235
|
-
int __pyx_clineno = 0;
|
|
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16379
|
PyObject *__pyx_r = 0;
|
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|
__Pyx_RefNannyDeclarations
|
|
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16381
|
__Pyx_RefNannySetupContext("__reduce_cython__ (wrapper)", 0);
|
|
@@ -16240,21 +16383,13 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
16240
16383
|
#if CYTHON_ASSUME_SAFE_MACROS
|
|
16241
16384
|
__pyx_nargs = PyTuple_GET_SIZE(__pyx_args);
|
|
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16385
|
#else
|
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-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(2, 1, __pyx_L3_error)
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|
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
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|
#endif
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|
#endif
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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16390
|
if (unlikely(__pyx_nargs > 0)) {
|
|
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|
__Pyx_RaiseArgtupleInvalid("__reduce_cython__", 1, 0, 0, __pyx_nargs); return NULL;}
|
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|
if (unlikely(__pyx_kwds) && __Pyx_NumKwargs_FASTCALL(__pyx_kwds) && unlikely(!__Pyx_CheckKeywordStrings(__pyx_kwds, "__reduce_cython__", 0))) return NULL;
|
|
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|
-
goto __pyx_L4_argument_unpacking_done;
|
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|
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goto __pyx_L3_error;
|
|
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|
-
__pyx_L3_error:;
|
|
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|
-
__Pyx_AddTraceback("biotite.sequence.phylo.tree.TreeNode.__reduce_cython__", __pyx_clineno, __pyx_lineno, __pyx_filename);
|
|
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|
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__Pyx_RefNannyFinishContext();
|
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|
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return NULL;
|
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|
-
__pyx_L4_argument_unpacking_done:;
|
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|
__pyx_r = __pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_32__reduce_cython__(((struct __pyx_obj_7biotite_8sequence_5phylo_4tree_TreeNode *)__pyx_v_self));
|
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16394
|
|
|
16260
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|
/* function exit code */
|
|
@@ -16268,7 +16403,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_32__reduce_c
|
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|
int __pyx_lineno = 0;
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const char *__pyx_filename = NULL;
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|
int __pyx_clineno = 0;
|
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-
__Pyx_RefNannySetupContext("__reduce_cython__",
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+
__Pyx_RefNannySetupContext("__reduce_cython__", 1);
|
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|
/* "(tree fragment)":2
|
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|
* def __reduce_cython__(self):
|
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@@ -16333,8 +16468,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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16333
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|
#if CYTHON_ASSUME_SAFE_MACROS
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|
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__pyx_nargs = PyTuple_Size(__pyx_args);
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-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(2, 3, __pyx_L3_error)
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__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
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|
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|
#endif
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__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
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@@ -16369,10 +16503,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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|
}
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|
__pyx_v___pyx_state = values[0];
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|
}
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|
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goto
|
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goto __pyx_L6_skip;
|
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|
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|
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__Pyx_RaiseArgtupleInvalid("__setstate_cython__", 1, 1, 1, __pyx_nargs); __PYX_ERR(2, 3, __pyx_L3_error)
|
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|
-
|
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goto __pyx_L4_argument_unpacking_done;
|
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|
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|
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|
{
|
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|
Py_ssize_t __pyx_temp;
|
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@@ -16403,7 +16538,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_8TreeNode_34__setstate
|
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|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
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int __pyx_clineno = 0;
|
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-
__Pyx_RefNannySetupContext("__setstate_cython__",
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+
__Pyx_RefNannySetupContext("__setstate_cython__", 1);
|
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|
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|
/* "(tree fragment)":4
|
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|
* raise TypeError, "no default __reduce__ due to non-trivial __cinit__"
|
|
@@ -16449,7 +16584,7 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__get_leaves(struct __py
|
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|
int __pyx_lineno = 0;
|
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const char *__pyx_filename = NULL;
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__Pyx_RefNannySetupContext("_get_leaves",
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__Pyx_RefNannySetupContext("_get_leaves", 1);
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|
/* "biotite/sequence/phylo/tree.pyx":995
|
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|
* cdef _get_leaves(TreeNode node, list leaf_list):
|
|
@@ -16472,13 +16607,20 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__get_leaves(struct __py
|
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|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
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|
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}
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__pyx_t_2 = __pyx_v_node->_children; __Pyx_INCREF(__pyx_t_2);
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__pyx_t_2 = __pyx_v_node->_children; __Pyx_INCREF(__pyx_t_2);
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{
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Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_2);
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 997, __pyx_L1_error)
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+
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|
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|
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}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_4); __pyx_t_3++; if (unlikely((0 < 0))) __PYX_ERR(0, 997, __pyx_L1_error)
|
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|
#else
|
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__pyx_t_4 =
|
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+
__pyx_t_4 = __Pyx_PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 997, __pyx_L1_error)
|
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|
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#endif
|
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|
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_ptype_7biotite_8sequence_5phylo_4tree_TreeNode))))) __PYX_ERR(0, 997, __pyx_L1_error)
|
|
@@ -16576,7 +16718,7 @@ static int __pyx_f_7biotite_8sequence_5phylo_4tree__get_leaf_count(struct __pyx_
|
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|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
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__Pyx_RefNannySetupContext("_get_leaf_count",
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+
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/* "biotite/sequence/phylo/tree.pyx":1006
|
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|
* cdef int _get_leaf_count(TreeNode node):
|
|
@@ -16608,13 +16750,20 @@ static int __pyx_f_7biotite_8sequence_5phylo_4tree__get_leaf_count(struct __pyx_
|
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|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
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|
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|
}
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__pyx_t_2 = __pyx_v_node->_children; __Pyx_INCREF(__pyx_t_2);
|
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|
+
__pyx_t_2 = __pyx_v_node->_children; __Pyx_INCREF(__pyx_t_2);
|
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+
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|
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+
{
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_2);
|
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|
+
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 1009, __pyx_L1_error)
|
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|
+
#endif
|
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|
+
if (__pyx_t_3 >= __pyx_temp) break;
|
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|
+
}
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_4 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_4); __pyx_t_3++; if (unlikely((0 < 0))) __PYX_ERR(0, 1009, __pyx_L1_error)
|
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|
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|
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__pyx_t_4 =
|
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|
+
__pyx_t_4 = __Pyx_PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 1009, __pyx_L1_error)
|
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|
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|
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_ptype_7biotite_8sequence_5phylo_4tree_TreeNode))))) __PYX_ERR(0, 1009, __pyx_L1_error)
|
|
@@ -16711,7 +16860,7 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__create_path_to_root(st
|
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|
int __pyx_lineno = 0;
|
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const char *__pyx_filename = NULL;
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int __pyx_clineno = 0;
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__Pyx_RefNannySetupContext("_create_path_to_root",
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|
+
__Pyx_RefNannySetupContext("_create_path_to_root", 1);
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/* "biotite/sequence/phylo/tree.pyx":1022
|
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|
* specified node
|
|
@@ -16842,8 +16991,7 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
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|
#if CYTHON_ASSUME_SAFE_MACROS
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|
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|
#else
|
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__pyx_nargs = PyTuple_Size(__pyx_args);
|
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|
-
if (unlikely((__pyx_nargs < 0))) __PYX_ERR(0, 1031, __pyx_L3_error)
|
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|
+
__pyx_nargs = PyTuple_Size(__pyx_args); if (unlikely(__pyx_nargs < 0)) return NULL;
|
|
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|
#endif
|
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|
#endif
|
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|
__pyx_kwvalues = __Pyx_KwValues_FASTCALL(__pyx_args, __pyx_nargs);
|
|
@@ -16878,10 +17026,11 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
16878
17026
|
}
|
|
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17027
|
__pyx_v_tree_or_node = values[0];
|
|
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|
}
|
|
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|
-
goto
|
|
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|
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goto __pyx_L6_skip;
|
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|
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|
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|
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|
-
|
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+
__pyx_L6_skip:;
|
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goto __pyx_L4_argument_unpacking_done;
|
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|
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|
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|
{
|
|
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|
Py_ssize_t __pyx_temp;
|
|
@@ -16921,7 +17070,7 @@ static PyObject *__pyx_pf_7biotite_8sequence_5phylo_4tree_as_binary(CYTHON_UNUSE
|
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|
int __pyx_lineno = 0;
|
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|
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|
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__Pyx_RefNannySetupContext("as_binary",
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+
__Pyx_RefNannySetupContext("as_binary", 1);
|
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|
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17075
|
/* "biotite/sequence/phylo/tree.pyx":1058
|
|
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|
* The converted tree or node.
|
|
@@ -17239,7 +17388,7 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__as_binary(struct __pyx
|
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|
int __pyx_lineno = 0;
|
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|
const char *__pyx_filename = NULL;
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|
int __pyx_clineno = 0;
|
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|
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__Pyx_RefNannySetupContext("_as_binary",
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|
+
__Pyx_RefNannySetupContext("_as_binary", 1);
|
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|
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|
/* "biotite/sequence/phylo/tree.pyx":1092
|
|
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|
* cdef float distance
|
|
@@ -17412,7 +17561,7 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__as_binary(struct __pyx
|
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17412
17561
|
}
|
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17562
|
#endif
|
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17563
|
{
|
|
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|
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PyObject *__pyx_callargs[
|
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|
+
PyObject *__pyx_callargs[2] = {__pyx_t_1, NULL};
|
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|
__pyx_t_4 = __Pyx_PyObject_FastCall(__pyx_t_3, __pyx_callargs+1-__pyx_t_9, 0+__pyx_t_9);
|
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|
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17567
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if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 1108, __pyx_L1_error)
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@@ -17531,13 +17680,20 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__as_binary(struct __pyx
|
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|
17531
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|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
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|
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__pyx_t_4 = __pyx_v_children; __Pyx_INCREF(__pyx_t_4);
|
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|
+
__pyx_t_4 = __pyx_v_children; __Pyx_INCREF(__pyx_t_4);
|
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+
{
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_4);
|
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 1128, __pyx_L14_error)
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|
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#endif
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|
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|
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|
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}
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_6); __pyx_t_5++; if (unlikely((0 < 0))) __PYX_ERR(0, 1128, __pyx_L14_error)
|
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|
#else
|
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|
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__pyx_t_6 =
|
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|
+
__pyx_t_6 = __Pyx_PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 1128, __pyx_L14_error)
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#endif
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|
if (!(likely(((__pyx_t_6) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_6, __pyx_ptype_7biotite_8sequence_5phylo_4tree_TreeNode))))) __PYX_ERR(0, 1128, __pyx_L14_error)
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@@ -17571,7 +17727,8 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__as_binary(struct __pyx
|
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|
__Pyx_GOTREF(__pyx_t_1);
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|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
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|
if (likely(PyList_CheckExact(__pyx_t_1)) || PyTuple_CheckExact(__pyx_t_1)) {
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__pyx_t_4 = __pyx_t_1; __Pyx_INCREF(__pyx_t_4);
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|
+
__pyx_t_4 = __pyx_t_1; __Pyx_INCREF(__pyx_t_4);
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|
+
__pyx_t_5 = 0;
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|
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|
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|
} else {
|
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|
__pyx_t_5 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_t_1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 1127, __pyx_L9_error)
|
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@@ -17582,19 +17739,31 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__as_binary(struct __pyx
|
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for (;;) {
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if (likely(!__pyx_t_10)) {
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|
if (likely(PyList_CheckExact(__pyx_t_4))) {
|
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|
-
|
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|
+
{
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_4);
|
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+
#if !CYTHON_ASSUME_SAFE_MACROS
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 1127, __pyx_L9_error)
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+
#endif
|
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|
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if (__pyx_t_5 >= __pyx_temp) break;
|
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|
+
}
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#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
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|
__pyx_t_1 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_1); __pyx_t_5++; if (unlikely((0 < 0))) __PYX_ERR(0, 1127, __pyx_L9_error)
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|
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__pyx_t_1 =
|
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__pyx_t_1 = __Pyx_PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1127, __pyx_L9_error)
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|
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|
} else {
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-
|
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|
+
{
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_4);
|
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+
#if !CYTHON_ASSUME_SAFE_MACROS
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 1127, __pyx_L9_error)
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#endif
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|
+
if (__pyx_t_5 >= __pyx_temp) break;
|
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|
+
}
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
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|
__pyx_t_1 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_1); __pyx_t_5++; if (unlikely((0 < 0))) __PYX_ERR(0, 1127, __pyx_L9_error)
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|
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__pyx_t_1 =
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__pyx_t_1 = __Pyx_PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1127, __pyx_L9_error)
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|
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|
#endif
|
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|
}
|
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@@ -17972,13 +18141,20 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__as_binary(struct __pyx
|
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|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
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__PYX_ERR(0, 1159, __pyx_L31_error)
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}
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__pyx_t_4 = __pyx_v_children; __Pyx_INCREF(__pyx_t_4);
|
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|
+
__pyx_t_4 = __pyx_v_children; __Pyx_INCREF(__pyx_t_4);
|
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|
+
__pyx_t_5 = 0;
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|
for (;;) {
|
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-
|
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|
+
{
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_4);
|
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|
+
#if !CYTHON_ASSUME_SAFE_MACROS
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if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 1159, __pyx_L31_error)
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+
#endif
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|
+
if (__pyx_t_5 >= __pyx_temp) break;
|
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+
}
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
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|
__pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_6); __pyx_t_5++; if (unlikely((0 < 0))) __PYX_ERR(0, 1159, __pyx_L31_error)
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__pyx_t_6 =
|
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+
__pyx_t_6 = __Pyx_PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 1159, __pyx_L31_error)
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|
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|
#endif
|
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|
if (!(likely(((__pyx_t_6) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_6, __pyx_ptype_7biotite_8sequence_5phylo_4tree_TreeNode))))) __PYX_ERR(0, 1159, __pyx_L31_error)
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|
@@ -18012,7 +18188,8 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__as_binary(struct __pyx
|
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|
__Pyx_GOTREF(__pyx_t_3);
|
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|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
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|
if (likely(PyList_CheckExact(__pyx_t_3)) || PyTuple_CheckExact(__pyx_t_3)) {
|
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|
-
__pyx_t_4 = __pyx_t_3; __Pyx_INCREF(__pyx_t_4);
|
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|
+
__pyx_t_4 = __pyx_t_3; __Pyx_INCREF(__pyx_t_4);
|
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|
+
__pyx_t_5 = 0;
|
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|
__pyx_t_10 = NULL;
|
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|
} else {
|
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|
__pyx_t_5 = -1; __pyx_t_4 = PyObject_GetIter(__pyx_t_3); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 1158, __pyx_L26_error)
|
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@@ -18023,19 +18200,31 @@ static PyObject *__pyx_f_7biotite_8sequence_5phylo_4tree__as_binary(struct __pyx
|
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|
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|
for (;;) {
|
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|
if (likely(!__pyx_t_10)) {
|
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|
if (likely(PyList_CheckExact(__pyx_t_4))) {
|
|
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|
-
|
|
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|
+
{
|
|
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|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_4);
|
|
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|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 1158, __pyx_L26_error)
|
|
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|
+
#endif
|
|
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|
+
if (__pyx_t_5 >= __pyx_temp) break;
|
|
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|
+
}
|
|
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|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
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|
__pyx_t_3 = PyList_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_3); __pyx_t_5++; if (unlikely((0 < 0))) __PYX_ERR(0, 1158, __pyx_L26_error)
|
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|
#else
|
|
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|
-
__pyx_t_3 =
|
|
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|
+
__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1158, __pyx_L26_error)
|
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|
__Pyx_GOTREF(__pyx_t_3);
|
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|
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|
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18216
|
} else {
|
|
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|
-
|
|
18217
|
+
{
|
|
18218
|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_4);
|
|
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|
+
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
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|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 1158, __pyx_L26_error)
|
|
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|
+
#endif
|
|
18222
|
+
if (__pyx_t_5 >= __pyx_temp) break;
|
|
18223
|
+
}
|
|
18035
18224
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
18036
18225
|
__pyx_t_3 = PyTuple_GET_ITEM(__pyx_t_4, __pyx_t_5); __Pyx_INCREF(__pyx_t_3); __pyx_t_5++; if (unlikely((0 < 0))) __PYX_ERR(0, 1158, __pyx_L26_error)
|
|
18037
18226
|
#else
|
|
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|
-
__pyx_t_3 =
|
|
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|
+
__pyx_t_3 = __Pyx_PySequence_ITEM(__pyx_t_4, __pyx_t_5); __pyx_t_5++; if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1158, __pyx_L26_error)
|
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|
__Pyx_GOTREF(__pyx_t_3);
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18229
|
#endif
|
|
18041
18230
|
}
|
|
@@ -18398,8 +18587,10 @@ static PyTypeObject __pyx_type_7biotite_8sequence_5phylo_4tree_TreeNode = {
|
|
|
18398
18587
|
};
|
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18399
18588
|
#endif
|
|
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18589
|
|
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|
+
#if CYTHON_USE_FREELISTS
|
|
18401
18591
|
static struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph *__pyx_freelist_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph[8];
|
|
18402
18592
|
static int __pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph = 0;
|
|
18593
|
+
#endif
|
|
18403
18594
|
|
|
18404
18595
|
static PyObject *__pyx_tp_new_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
|
|
18405
18596
|
PyObject *o;
|
|
@@ -18407,7 +18598,7 @@ static PyObject *__pyx_tp_new_7biotite_8sequence_5phylo_4tree___pyx_scope_struct
|
|
|
18407
18598
|
allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc);
|
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18408
18599
|
o = alloc_func(t, 0);
|
|
18409
18600
|
#else
|
|
18410
|
-
#if
|
|
18601
|
+
#if CYTHON_USE_FREELISTS
|
|
18411
18602
|
if (likely((int)(__pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph)))) {
|
|
18412
18603
|
o = (PyObject*)__pyx_freelist_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph[--__pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph];
|
|
18413
18604
|
memset(o, 0, sizeof(struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph));
|
|
@@ -18434,7 +18625,7 @@ static void __pyx_tp_dealloc_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_
|
|
|
18434
18625
|
#endif
|
|
18435
18626
|
PyObject_GC_UnTrack(o);
|
|
18436
18627
|
Py_CLEAR(p->__pyx_v_node_repr);
|
|
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|
-
#if
|
|
18628
|
+
#if CYTHON_USE_FREELISTS
|
|
18438
18629
|
if (((int)(__pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph)))) {
|
|
18439
18630
|
__pyx_freelist_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph[__pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph++] = ((struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct__as_graph *)o);
|
|
18440
18631
|
} else
|
|
@@ -18567,8 +18758,10 @@ static PyTypeObject __pyx_type_7biotite_8sequence_5phylo_4tree___pyx_scope_struc
|
|
|
18567
18758
|
};
|
|
18568
18759
|
#endif
|
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18569
18760
|
|
|
18761
|
+
#if CYTHON_USE_FREELISTS
|
|
18570
18762
|
static struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr *__pyx_freelist_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr[8];
|
|
18571
18763
|
static int __pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr = 0;
|
|
18764
|
+
#endif
|
|
18572
18765
|
|
|
18573
18766
|
static PyObject *__pyx_tp_new_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
|
|
18574
18767
|
PyObject *o;
|
|
@@ -18576,7 +18769,7 @@ static PyObject *__pyx_tp_new_7biotite_8sequence_5phylo_4tree___pyx_scope_struct
|
|
|
18576
18769
|
allocfunc alloc_func = (allocfunc)PyType_GetSlot(t, Py_tp_alloc);
|
|
18577
18770
|
o = alloc_func(t, 0);
|
|
18578
18771
|
#else
|
|
18579
|
-
#if
|
|
18772
|
+
#if CYTHON_USE_FREELISTS
|
|
18580
18773
|
if (likely((int)(__pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr > 0) & (int)(t->tp_basicsize == sizeof(struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr)))) {
|
|
18581
18774
|
o = (PyObject*)__pyx_freelist_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr[--__pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr];
|
|
18582
18775
|
memset(o, 0, sizeof(struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr));
|
|
@@ -18606,7 +18799,7 @@ static void __pyx_tp_dealloc_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_
|
|
|
18606
18799
|
Py_CLEAR(p->__pyx_genexpr_arg_0);
|
|
18607
18800
|
Py_CLEAR(p->__pyx_v_child);
|
|
18608
18801
|
Py_CLEAR(p->__pyx_t_0);
|
|
18609
|
-
#if
|
|
18802
|
+
#if CYTHON_USE_FREELISTS
|
|
18610
18803
|
if (((int)(__pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr < 8) & (int)(Py_TYPE(o)->tp_basicsize == sizeof(struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr)))) {
|
|
18611
18804
|
__pyx_freelist_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr[__pyx_freecount_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr++] = ((struct __pyx_obj_7biotite_8sequence_5phylo_4tree___pyx_scope_struct_1_genexpr *)o);
|
|
18612
18805
|
} else
|
|
@@ -19003,7 +19196,7 @@ static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) {
|
|
|
19003
19196
|
__Pyx_RefNannyDeclarations
|
|
19004
19197
|
__Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
|
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19198
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
19199
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":986
|
|
19007
19200
|
* __pyx_import_array()
|
|
19008
19201
|
* except Exception:
|
|
19009
19202
|
* raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
|
|
@@ -19014,7 +19207,7 @@ static CYTHON_SMALL_CODE int __Pyx_InitCachedConstants(void) {
|
|
|
19014
19207
|
__Pyx_GOTREF(__pyx_tuple_);
|
|
19015
19208
|
__Pyx_GIVEREF(__pyx_tuple_);
|
|
19016
19209
|
|
|
19017
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
19210
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-e7cfnk9g/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":992
|
|
19018
19211
|
* _import_umath()
|
|
19019
19212
|
* except Exception:
|
|
19020
19213
|
* raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -19533,33 +19726,33 @@ static int __Pyx_modinit_type_import_code(void) {
|
|
|
19533
19726
|
/*--- Type import code ---*/
|
|
19534
19727
|
__pyx_t_1 = PyImport_ImportModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_t_1)) __PYX_ERR(3, 9, __pyx_L1_error)
|
|
19535
19728
|
__Pyx_GOTREF(__pyx_t_1);
|
|
19536
|
-
__pyx_ptype_7cpython_4type_type =
|
|
19729
|
+
__pyx_ptype_7cpython_4type_type = __Pyx_ImportType_3_0_10(__pyx_t_1, __Pyx_BUILTIN_MODULE_NAME, "type",
|
|
19537
19730
|
#if defined(PYPY_VERSION_NUM) && PYPY_VERSION_NUM < 0x050B0000
|
|
19538
|
-
sizeof(PyTypeObject),
|
|
19731
|
+
sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyTypeObject),
|
|
19539
19732
|
#elif CYTHON_COMPILING_IN_LIMITED_API
|
|
19540
|
-
sizeof(PyTypeObject),
|
|
19733
|
+
sizeof(PyTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyTypeObject),
|
|
19541
19734
|
#else
|
|
19542
|
-
sizeof(PyHeapTypeObject),
|
|
19735
|
+
sizeof(PyHeapTypeObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyHeapTypeObject),
|
|
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19736
|
#endif
|
|
19544
|
-
|
|
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|
+
__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_7cpython_4type_type) __PYX_ERR(3, 9, __pyx_L1_error)
|
|
19545
19738
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
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19739
|
__pyx_t_1 = PyImport_ImportModule("numpy"); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 202, __pyx_L1_error)
|
|
19547
19740
|
__Pyx_GOTREF(__pyx_t_1);
|
|
19548
|
-
__pyx_ptype_5numpy_dtype =
|
|
19549
|
-
__pyx_ptype_5numpy_flatiter =
|
|
19550
|
-
__pyx_ptype_5numpy_broadcast =
|
|
19551
|
-
__pyx_ptype_5numpy_ndarray =
|
|
19552
|
-
__pyx_ptype_5numpy_generic =
|
|
19553
|
-
__pyx_ptype_5numpy_number =
|
|
19554
|
-
__pyx_ptype_5numpy_integer =
|
|
19555
|
-
__pyx_ptype_5numpy_signedinteger =
|
|
19556
|
-
__pyx_ptype_5numpy_unsignedinteger =
|
|
19557
|
-
__pyx_ptype_5numpy_inexact =
|
|
19558
|
-
__pyx_ptype_5numpy_floating =
|
|
19559
|
-
__pyx_ptype_5numpy_complexfloating =
|
|
19560
|
-
__pyx_ptype_5numpy_flexible =
|
|
19561
|
-
__pyx_ptype_5numpy_character =
|
|
19562
|
-
__pyx_ptype_5numpy_ufunc =
|
|
19741
|
+
__pyx_ptype_5numpy_dtype = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "dtype", sizeof(PyArray_Descr), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyArray_Descr),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_dtype) __PYX_ERR(1, 202, __pyx_L1_error)
|
|
19742
|
+
__pyx_ptype_5numpy_flatiter = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "flatiter", sizeof(PyArrayIterObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyArrayIterObject),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_flatiter) __PYX_ERR(1, 225, __pyx_L1_error)
|
|
19743
|
+
__pyx_ptype_5numpy_broadcast = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "broadcast", sizeof(PyArrayMultiIterObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyArrayMultiIterObject),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_broadcast) __PYX_ERR(1, 229, __pyx_L1_error)
|
|
19744
|
+
__pyx_ptype_5numpy_ndarray = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "ndarray", sizeof(PyArrayObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyArrayObject),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_ndarray) __PYX_ERR(1, 238, __pyx_L1_error)
|
|
19745
|
+
__pyx_ptype_5numpy_generic = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "generic", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_generic) __PYX_ERR(1, 812, __pyx_L1_error)
|
|
19746
|
+
__pyx_ptype_5numpy_number = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "number", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_number) __PYX_ERR(1, 814, __pyx_L1_error)
|
|
19747
|
+
__pyx_ptype_5numpy_integer = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "integer", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_integer) __PYX_ERR(1, 816, __pyx_L1_error)
|
|
19748
|
+
__pyx_ptype_5numpy_signedinteger = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "signedinteger", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_signedinteger) __PYX_ERR(1, 818, __pyx_L1_error)
|
|
19749
|
+
__pyx_ptype_5numpy_unsignedinteger = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "unsignedinteger", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_unsignedinteger) __PYX_ERR(1, 820, __pyx_L1_error)
|
|
19750
|
+
__pyx_ptype_5numpy_inexact = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "inexact", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_inexact) __PYX_ERR(1, 822, __pyx_L1_error)
|
|
19751
|
+
__pyx_ptype_5numpy_floating = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "floating", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_floating) __PYX_ERR(1, 824, __pyx_L1_error)
|
|
19752
|
+
__pyx_ptype_5numpy_complexfloating = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "complexfloating", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_complexfloating) __PYX_ERR(1, 826, __pyx_L1_error)
|
|
19753
|
+
__pyx_ptype_5numpy_flexible = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "flexible", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_flexible) __PYX_ERR(1, 828, __pyx_L1_error)
|
|
19754
|
+
__pyx_ptype_5numpy_character = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "character", sizeof(PyObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyObject),__Pyx_ImportType_CheckSize_Warn_3_0_10); if (!__pyx_ptype_5numpy_character) __PYX_ERR(1, 830, __pyx_L1_error)
|
|
19755
|
+
__pyx_ptype_5numpy_ufunc = __Pyx_ImportType_3_0_10(__pyx_t_1, "numpy", "ufunc", sizeof(PyUFuncObject), __PYX_GET_STRUCT_ALIGNMENT_3_0_10(PyUFuncObject),__Pyx_ImportType_CheckSize_Ignore_3_0_10); if (!__pyx_ptype_5numpy_ufunc) __PYX_ERR(1, 868, __pyx_L1_error)
|
|
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19756
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
19564
19757
|
__Pyx_RefNannyFinishContext();
|
|
19565
19758
|
return 0;
|
|
@@ -19777,7 +19970,7 @@ static CYTHON_SMALL_CODE int __pyx_pymod_exec_tree(PyObject *__pyx_pyinit_module
|
|
|
19777
19970
|
__pyx_t_1 = PyModule_Create(&__pyx_moduledef); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
19778
19971
|
{
|
|
19779
19972
|
int add_module_result = PyState_AddModule(__pyx_t_1, &__pyx_moduledef);
|
|
19780
|
-
__pyx_t_1 = 0; /* transfer ownership from __pyx_t_1 to tree pseudovariable */
|
|
19973
|
+
__pyx_t_1 = 0; /* transfer ownership from __pyx_t_1 to "tree" pseudovariable */
|
|
19781
19974
|
if (unlikely((add_module_result < 0))) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
19782
19975
|
pystate_addmodule_run = 1;
|
|
19783
19976
|
}
|
|
@@ -19789,10 +19982,8 @@ static CYTHON_SMALL_CODE int __pyx_pymod_exec_tree(PyObject *__pyx_pyinit_module
|
|
|
19789
19982
|
CYTHON_UNUSED_VAR(__pyx_t_1);
|
|
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19983
|
__pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
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19984
|
Py_INCREF(__pyx_d);
|
|
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|
-
__pyx_b =
|
|
19793
|
-
|
|
19794
|
-
__pyx_cython_runtime = PyImport_AddModule((char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
19795
|
-
Py_INCREF(__pyx_cython_runtime);
|
|
19985
|
+
__pyx_b = __Pyx_PyImport_AddModuleRef(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
19986
|
+
__pyx_cython_runtime = __Pyx_PyImport_AddModuleRef((const char *) "cython_runtime"); if (unlikely(!__pyx_cython_runtime)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
19796
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|
if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
19797
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|
#if CYTHON_REFNANNY
|
|
19798
19989
|
__Pyx_RefNanny = __Pyx_RefNannyImportAPI("refnanny");
|
|
@@ -19804,7 +19995,7 @@ if (!__Pyx_RefNanny) {
|
|
|
19804
19995
|
}
|
|
19805
19996
|
#endif
|
|
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19997
|
__Pyx_RefNannySetupContext("__Pyx_PyMODINIT_FUNC PyInit_tree(void)", 0);
|
|
19807
|
-
if (__Pyx_check_binary_version() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
19998
|
+
if (__Pyx_check_binary_version(__PYX_LIMITED_VERSION_HEX, __Pyx_get_runtime_version(), CYTHON_COMPILING_IN_LIMITED_API) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
19808
19999
|
#ifdef __Pxy_PyFrame_Initialize_Offsets
|
|
19809
20000
|
__Pxy_PyFrame_Initialize_Offsets();
|
|
19810
20001
|
#endif
|
|
@@ -20599,6 +20790,8 @@ static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObjec
|
|
|
20599
20790
|
tmp_value = tstate->current_exception;
|
|
20600
20791
|
tstate->current_exception = value;
|
|
20601
20792
|
Py_XDECREF(tmp_value);
|
|
20793
|
+
Py_XDECREF(type);
|
|
20794
|
+
Py_XDECREF(tb);
|
|
20602
20795
|
#else
|
|
20603
20796
|
PyObject *tmp_type, *tmp_value, *tmp_tb;
|
|
20604
20797
|
tmp_type = tstate->curexc_type;
|
|
@@ -20656,14 +20849,20 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject
|
|
|
20656
20849
|
#endif
|
|
20657
20850
|
|
|
20658
20851
|
/* PyObjectGetAttrStrNoError */
|
|
20852
|
+
#if __PYX_LIMITED_VERSION_HEX < 0x030d00A1
|
|
20659
20853
|
static void __Pyx_PyObject_GetAttrStr_ClearAttributeError(void) {
|
|
20660
20854
|
__Pyx_PyThreadState_declare
|
|
20661
20855
|
__Pyx_PyThreadState_assign
|
|
20662
20856
|
if (likely(__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError)))
|
|
20663
20857
|
__Pyx_PyErr_Clear();
|
|
20664
20858
|
}
|
|
20859
|
+
#endif
|
|
20665
20860
|
static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, PyObject* attr_name) {
|
|
20666
20861
|
PyObject *result;
|
|
20862
|
+
#if __PYX_LIMITED_VERSION_HEX >= 0x030d00A1
|
|
20863
|
+
(void) PyObject_GetOptionalAttr(obj, attr_name, &result);
|
|
20864
|
+
return result;
|
|
20865
|
+
#else
|
|
20667
20866
|
#if CYTHON_COMPILING_IN_CPYTHON && CYTHON_USE_TYPE_SLOTS && PY_VERSION_HEX >= 0x030700B1
|
|
20668
20867
|
PyTypeObject* tp = Py_TYPE(obj);
|
|
20669
20868
|
if (likely(tp->tp_getattro == PyObject_GenericGetAttr)) {
|
|
@@ -20675,6 +20874,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStrNoError(PyObject* obj, P
|
|
|
20675
20874
|
__Pyx_PyObject_GetAttrStr_ClearAttributeError();
|
|
20676
20875
|
}
|
|
20677
20876
|
return result;
|
|
20877
|
+
#endif
|
|
20678
20878
|
}
|
|
20679
20879
|
|
|
20680
20880
|
/* GetBuiltinName */
|
|
@@ -20875,8 +21075,13 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg
|
|
|
20875
21075
|
ternaryfunc call = Py_TYPE(func)->tp_call;
|
|
20876
21076
|
if (unlikely(!call))
|
|
20877
21077
|
return PyObject_Call(func, arg, kw);
|
|
21078
|
+
#if PY_MAJOR_VERSION < 3
|
|
20878
21079
|
if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
|
|
20879
21080
|
return NULL;
|
|
21081
|
+
#else
|
|
21082
|
+
if (unlikely(Py_EnterRecursiveCall(" while calling a Python object")))
|
|
21083
|
+
return NULL;
|
|
21084
|
+
#endif
|
|
20880
21085
|
result = (*call)(func, arg, kw);
|
|
20881
21086
|
Py_LeaveRecursiveCall();
|
|
20882
21087
|
if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
|
|
@@ -21248,12 +21453,30 @@ static CYTHON_INLINE PyObject * __Pyx_GetKwValue_FASTCALL(PyObject *kwnames, PyO
|
|
|
21248
21453
|
{
|
|
21249
21454
|
int eq = __Pyx_PyUnicode_Equals(s, PyTuple_GET_ITEM(kwnames, i), Py_EQ);
|
|
21250
21455
|
if (unlikely(eq != 0)) {
|
|
21251
|
-
if (unlikely(eq < 0)) return NULL;
|
|
21456
|
+
if (unlikely(eq < 0)) return NULL;
|
|
21252
21457
|
return kwvalues[i];
|
|
21253
21458
|
}
|
|
21254
21459
|
}
|
|
21255
|
-
return NULL;
|
|
21460
|
+
return NULL;
|
|
21256
21461
|
}
|
|
21462
|
+
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030d0000
|
|
21463
|
+
CYTHON_UNUSED static PyObject *__Pyx_KwargsAsDict_FASTCALL(PyObject *kwnames, PyObject *const *kwvalues) {
|
|
21464
|
+
Py_ssize_t i, nkwargs = PyTuple_GET_SIZE(kwnames);
|
|
21465
|
+
PyObject *dict;
|
|
21466
|
+
dict = PyDict_New();
|
|
21467
|
+
if (unlikely(!dict))
|
|
21468
|
+
return NULL;
|
|
21469
|
+
for (i=0; i<nkwargs; i++) {
|
|
21470
|
+
PyObject *key = PyTuple_GET_ITEM(kwnames, i);
|
|
21471
|
+
if (unlikely(PyDict_SetItem(dict, key, kwvalues[i]) < 0))
|
|
21472
|
+
goto bad;
|
|
21473
|
+
}
|
|
21474
|
+
return dict;
|
|
21475
|
+
bad:
|
|
21476
|
+
Py_DECREF(dict);
|
|
21477
|
+
return NULL;
|
|
21478
|
+
}
|
|
21479
|
+
#endif
|
|
21257
21480
|
#endif
|
|
21258
21481
|
|
|
21259
21482
|
/* RaiseArgTupleInvalid */
|
|
@@ -21347,7 +21570,7 @@ static int __Pyx_ParseOptionalKeywords(
|
|
|
21347
21570
|
if (*name) {
|
|
21348
21571
|
values[name-argnames] = value;
|
|
21349
21572
|
#if CYTHON_AVOID_BORROWED_REFS
|
|
21350
|
-
Py_INCREF(value);
|
|
21573
|
+
Py_INCREF(value);
|
|
21351
21574
|
Py_DECREF(key);
|
|
21352
21575
|
#endif
|
|
21353
21576
|
key = NULL;
|
|
@@ -21366,7 +21589,7 @@ static int __Pyx_ParseOptionalKeywords(
|
|
|
21366
21589
|
&& _PyString_Eq(**name, key)) {
|
|
21367
21590
|
values[name-argnames] = value;
|
|
21368
21591
|
#if CYTHON_AVOID_BORROWED_REFS
|
|
21369
|
-
value = NULL;
|
|
21592
|
+
value = NULL;
|
|
21370
21593
|
#endif
|
|
21371
21594
|
break;
|
|
21372
21595
|
}
|
|
@@ -21398,7 +21621,7 @@ static int __Pyx_ParseOptionalKeywords(
|
|
|
21398
21621
|
if (cmp == 0) {
|
|
21399
21622
|
values[name-argnames] = value;
|
|
21400
21623
|
#if CYTHON_AVOID_BORROWED_REFS
|
|
21401
|
-
value = NULL;
|
|
21624
|
+
value = NULL;
|
|
21402
21625
|
#endif
|
|
21403
21626
|
break;
|
|
21404
21627
|
}
|
|
@@ -21524,9 +21747,15 @@ static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args,
|
|
|
21524
21747
|
PyObject *result;
|
|
21525
21748
|
assert(kwargs == NULL || PyDict_Check(kwargs));
|
|
21526
21749
|
nk = kwargs ? PyDict_Size(kwargs) : 0;
|
|
21750
|
+
#if PY_MAJOR_VERSION < 3
|
|
21527
21751
|
if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object"))) {
|
|
21528
21752
|
return NULL;
|
|
21529
21753
|
}
|
|
21754
|
+
#else
|
|
21755
|
+
if (unlikely(Py_EnterRecursiveCall(" while calling a Python object"))) {
|
|
21756
|
+
return NULL;
|
|
21757
|
+
}
|
|
21758
|
+
#endif
|
|
21530
21759
|
if (
|
|
21531
21760
|
#if PY_MAJOR_VERSION >= 3
|
|
21532
21761
|
co->co_kwonlyargcount == 0 &&
|
|
@@ -21601,10 +21830,15 @@ done:
|
|
|
21601
21830
|
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
|
|
21602
21831
|
PyObject *self, *result;
|
|
21603
21832
|
PyCFunction cfunc;
|
|
21604
|
-
cfunc =
|
|
21605
|
-
self =
|
|
21833
|
+
cfunc = __Pyx_CyOrPyCFunction_GET_FUNCTION(func);
|
|
21834
|
+
self = __Pyx_CyOrPyCFunction_GET_SELF(func);
|
|
21835
|
+
#if PY_MAJOR_VERSION < 3
|
|
21606
21836
|
if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
|
|
21607
21837
|
return NULL;
|
|
21838
|
+
#else
|
|
21839
|
+
if (unlikely(Py_EnterRecursiveCall(" while calling a Python object")))
|
|
21840
|
+
return NULL;
|
|
21841
|
+
#endif
|
|
21608
21842
|
result = cfunc(self, arg);
|
|
21609
21843
|
Py_LeaveRecursiveCall();
|
|
21610
21844
|
if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
|
|
@@ -21617,6 +21851,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject
|
|
|
21617
21851
|
#endif
|
|
21618
21852
|
|
|
21619
21853
|
/* PyObjectFastCall */
|
|
21854
|
+
#if PY_VERSION_HEX < 0x03090000 || CYTHON_COMPILING_IN_LIMITED_API
|
|
21620
21855
|
static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject **args, size_t nargs, PyObject *kwargs) {
|
|
21621
21856
|
PyObject *argstuple;
|
|
21622
21857
|
PyObject *result = 0;
|
|
@@ -21632,28 +21867,17 @@ static PyObject* __Pyx_PyObject_FastCall_fallback(PyObject *func, PyObject **arg
|
|
|
21632
21867
|
Py_DECREF(argstuple);
|
|
21633
21868
|
return result;
|
|
21634
21869
|
}
|
|
21870
|
+
#endif
|
|
21635
21871
|
static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObject **args, size_t _nargs, PyObject *kwargs) {
|
|
21636
21872
|
Py_ssize_t nargs = __Pyx_PyVectorcall_NARGS(_nargs);
|
|
21637
21873
|
#if CYTHON_COMPILING_IN_CPYTHON
|
|
21638
21874
|
if (nargs == 0 && kwargs == NULL) {
|
|
21639
|
-
|
|
21640
|
-
|
|
21641
|
-
#else
|
|
21642
|
-
if (PyCFunction_Check(func))
|
|
21643
|
-
#endif
|
|
21644
|
-
{
|
|
21645
|
-
if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) {
|
|
21646
|
-
return __Pyx_PyObject_CallMethO(func, NULL);
|
|
21647
|
-
}
|
|
21648
|
-
}
|
|
21875
|
+
if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_NOARGS))
|
|
21876
|
+
return __Pyx_PyObject_CallMethO(func, NULL);
|
|
21649
21877
|
}
|
|
21650
21878
|
else if (nargs == 1 && kwargs == NULL) {
|
|
21651
|
-
if (
|
|
21652
|
-
|
|
21653
|
-
if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
|
|
21654
|
-
return __Pyx_PyObject_CallMethO(func, args[0]);
|
|
21655
|
-
}
|
|
21656
|
-
}
|
|
21879
|
+
if (__Pyx_CyOrPyCFunction_Check(func) && likely( __Pyx_CyOrPyCFunction_GET_FLAGS(func) & METH_O))
|
|
21880
|
+
return __Pyx_PyObject_CallMethO(func, args[0]);
|
|
21657
21881
|
}
|
|
21658
21882
|
#endif
|
|
21659
21883
|
#if PY_VERSION_HEX < 0x030800B1
|
|
@@ -21677,25 +21901,31 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_FastCallDict(PyObject *func, PyObj
|
|
|
21677
21901
|
}
|
|
21678
21902
|
#endif
|
|
21679
21903
|
#endif
|
|
21680
|
-
|
|
21681
|
-
|
|
21682
|
-
|
|
21683
|
-
|
|
21684
|
-
|
|
21685
|
-
|
|
21686
|
-
|
|
21687
|
-
|
|
21688
|
-
|
|
21689
|
-
|
|
21690
|
-
|
|
21691
|
-
|
|
21692
|
-
|
|
21904
|
+
if (kwargs == NULL) {
|
|
21905
|
+
#if CYTHON_VECTORCALL
|
|
21906
|
+
#if PY_VERSION_HEX < 0x03090000
|
|
21907
|
+
vectorcallfunc f = _PyVectorcall_Function(func);
|
|
21908
|
+
#else
|
|
21909
|
+
vectorcallfunc f = PyVectorcall_Function(func);
|
|
21910
|
+
#endif
|
|
21911
|
+
if (f) {
|
|
21912
|
+
return f(func, args, (size_t)nargs, NULL);
|
|
21913
|
+
}
|
|
21914
|
+
#elif defined(__Pyx_CyFunction_USED) && CYTHON_BACKPORT_VECTORCALL
|
|
21915
|
+
if (__Pyx_CyFunction_CheckExact(func)) {
|
|
21916
|
+
__pyx_vectorcallfunc f = __Pyx_CyFunction_func_vectorcall(func);
|
|
21917
|
+
if (f) return f(func, args, (size_t)nargs, NULL);
|
|
21918
|
+
}
|
|
21919
|
+
#endif
|
|
21693
21920
|
}
|
|
21694
|
-
#endif
|
|
21695
21921
|
if (nargs == 0) {
|
|
21696
21922
|
return __Pyx_PyObject_Call(func, __pyx_empty_tuple, kwargs);
|
|
21697
21923
|
}
|
|
21924
|
+
#if PY_VERSION_HEX >= 0x03090000 && !CYTHON_COMPILING_IN_LIMITED_API
|
|
21925
|
+
return PyObject_VectorcallDict(func, args, (size_t)nargs, kwargs);
|
|
21926
|
+
#else
|
|
21698
21927
|
return __Pyx_PyObject_FastCall_fallback(func, args, (size_t)nargs, kwargs);
|
|
21928
|
+
#endif
|
|
21699
21929
|
}
|
|
21700
21930
|
|
|
21701
21931
|
/* PyObjectSetAttrStr */
|
|
@@ -21758,7 +21988,7 @@ static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name)
|
|
|
21758
21988
|
{
|
|
21759
21989
|
PyObject *result;
|
|
21760
21990
|
#if !CYTHON_AVOID_BORROWED_REFS
|
|
21761
|
-
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
|
|
21991
|
+
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && PY_VERSION_HEX < 0x030d0000
|
|
21762
21992
|
result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash);
|
|
21763
21993
|
__PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
|
|
21764
21994
|
if (likely(result)) {
|
|
@@ -21900,7 +22130,7 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
|
|
|
21900
22130
|
}
|
|
21901
22131
|
}
|
|
21902
22132
|
#else
|
|
21903
|
-
if (is_list ||
|
|
22133
|
+
if (is_list || !PyMapping_Check(o)) {
|
|
21904
22134
|
return PySequence_GetItem(o, i);
|
|
21905
22135
|
}
|
|
21906
22136
|
#endif
|
|
@@ -21953,11 +22183,7 @@ static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObje
|
|
|
21953
22183
|
}
|
|
21954
22184
|
}
|
|
21955
22185
|
#else
|
|
21956
|
-
|
|
21957
|
-
if (is_list || (PySequence_Check(o) && !PyDict_Check(o)))
|
|
21958
|
-
#else
|
|
21959
|
-
if (is_list || PySequence_Check(o))
|
|
21960
|
-
#endif
|
|
22186
|
+
if (is_list || !PyMapping_Check(o))
|
|
21961
22187
|
{
|
|
21962
22188
|
return PySequence_SetItem(o, i, v);
|
|
21963
22189
|
}
|
|
@@ -22143,12 +22369,21 @@ try_unpack:
|
|
|
22143
22369
|
}
|
|
22144
22370
|
|
|
22145
22371
|
/* PyObjectCallMethod1 */
|
|
22372
|
+
#if !(CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2)
|
|
22146
22373
|
static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) {
|
|
22147
22374
|
PyObject *result = __Pyx_PyObject_CallOneArg(method, arg);
|
|
22148
22375
|
Py_DECREF(method);
|
|
22149
22376
|
return result;
|
|
22150
22377
|
}
|
|
22378
|
+
#endif
|
|
22151
22379
|
static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) {
|
|
22380
|
+
#if CYTHON_VECTORCALL && __PYX_LIMITED_VERSION_HEX >= 0x030C00A2
|
|
22381
|
+
PyObject *args[2] = {obj, arg};
|
|
22382
|
+
(void) __Pyx_PyObject_GetMethod;
|
|
22383
|
+
(void) __Pyx_PyObject_CallOneArg;
|
|
22384
|
+
(void) __Pyx_PyObject_Call2Args;
|
|
22385
|
+
return PyObject_VectorcallMethod(method_name, args, 2 | PY_VECTORCALL_ARGUMENTS_OFFSET, NULL);
|
|
22386
|
+
#else
|
|
22152
22387
|
PyObject *method = NULL, *result;
|
|
22153
22388
|
int is_method = __Pyx_PyObject_GetMethod(obj, method_name, &method);
|
|
22154
22389
|
if (likely(is_method)) {
|
|
@@ -22158,6 +22393,7 @@ static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name
|
|
|
22158
22393
|
}
|
|
22159
22394
|
if (unlikely(!method)) return NULL;
|
|
22160
22395
|
return __Pyx__PyObject_CallMethod1(method, arg);
|
|
22396
|
+
#endif
|
|
22161
22397
|
}
|
|
22162
22398
|
|
|
22163
22399
|
/* pop_index */
|
|
@@ -22310,7 +22546,9 @@ static PyObject *__Pyx_PyObject_GetItem_Slow(PyObject *obj, PyObject *key) {
|
|
|
22310
22546
|
__Pyx_TypeName obj_type_name;
|
|
22311
22547
|
if (likely(PyType_Check(obj))) {
|
|
22312
22548
|
PyObject *meth = __Pyx_PyObject_GetAttrStrNoError(obj, __pyx_n_s_class_getitem);
|
|
22313
|
-
if (meth) {
|
|
22549
|
+
if (!meth) {
|
|
22550
|
+
PyErr_Clear();
|
|
22551
|
+
} else {
|
|
22314
22552
|
PyObject *result = __Pyx_PyObject_CallOneArg(meth, key);
|
|
22315
22553
|
Py_DECREF(meth);
|
|
22316
22554
|
return result;
|
|
@@ -22338,9 +22576,10 @@ static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject *key) {
|
|
|
22338
22576
|
|
|
22339
22577
|
/* UnpackUnboundCMethod */
|
|
22340
22578
|
static PyObject *__Pyx_SelflessCall(PyObject *method, PyObject *args, PyObject *kwargs) {
|
|
22579
|
+
PyObject *result;
|
|
22341
22580
|
PyObject *selfless_args = PyTuple_GetSlice(args, 1, PyTuple_Size(args));
|
|
22342
22581
|
if (unlikely(!selfless_args)) return NULL;
|
|
22343
|
-
|
|
22582
|
+
result = PyObject_Call(method, selfless_args, kwargs);
|
|
22344
22583
|
Py_DECREF(selfless_args);
|
|
22345
22584
|
return result;
|
|
22346
22585
|
}
|
|
@@ -22360,7 +22599,7 @@ static int __Pyx_TryUnpackUnboundCMethod(__Pyx_CachedCFunction* target) {
|
|
|
22360
22599
|
#if PY_MAJOR_VERSION >= 3
|
|
22361
22600
|
if (likely(__Pyx_TypeCheck(method, &PyMethodDescr_Type)))
|
|
22362
22601
|
#else
|
|
22363
|
-
if (likely(!
|
|
22602
|
+
if (likely(!__Pyx_CyOrPyCFunction_Check(method)))
|
|
22364
22603
|
#endif
|
|
22365
22604
|
{
|
|
22366
22605
|
PyMethodDescrObject *descr = (PyMethodDescrObject*) method;
|
|
@@ -22368,9 +22607,7 @@ static int __Pyx_TryUnpackUnboundCMethod(__Pyx_CachedCFunction* target) {
|
|
|
22368
22607
|
target->flag = descr->d_method->ml_flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_STACKLESS);
|
|
22369
22608
|
} else
|
|
22370
22609
|
#endif
|
|
22371
|
-
#if
|
|
22372
|
-
#elif PY_VERSION_HEX >= 0x03090000
|
|
22373
|
-
if (PyCFunction_CheckExact(method))
|
|
22610
|
+
#if CYTHON_COMPILING_IN_PYPY
|
|
22374
22611
|
#else
|
|
22375
22612
|
if (PyCFunction_Check(method))
|
|
22376
22613
|
#endif
|
|
@@ -22479,9 +22716,10 @@ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
|
|
|
22479
22716
|
|
|
22480
22717
|
/* IterFinish */
|
|
22481
22718
|
static CYTHON_INLINE int __Pyx_IterFinish(void) {
|
|
22719
|
+
PyObject* exc_type;
|
|
22482
22720
|
__Pyx_PyThreadState_declare
|
|
22483
22721
|
__Pyx_PyThreadState_assign
|
|
22484
|
-
|
|
22722
|
+
exc_type = __Pyx_PyErr_CurrentExceptionType();
|
|
22485
22723
|
if (unlikely(exc_type)) {
|
|
22486
22724
|
if (unlikely(!__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)))
|
|
22487
22725
|
return -1;
|
|
@@ -22542,7 +22780,7 @@ static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_co
|
|
|
22542
22780
|
if (!CYTHON_PEP393_ENABLED || ukind == result_ukind) {
|
|
22543
22781
|
memcpy((char *)result_udata + (char_pos << kind_shift), udata, (size_t) (ulength << kind_shift));
|
|
22544
22782
|
} else {
|
|
22545
|
-
#if PY_VERSION_HEX >=
|
|
22783
|
+
#if PY_VERSION_HEX >= 0x030d0000
|
|
22546
22784
|
if (unlikely(PyUnicode_CopyCharacters(result_uval, char_pos, uval, 0, ulength) < 0)) goto bad;
|
|
22547
22785
|
#elif CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030300F0 || defined(_PyUnicode_FastCopyCharacters)
|
|
22548
22786
|
_PyUnicode_FastCopyCharacters(result_uval, char_pos, uval, 0, ulength);
|
|
@@ -22689,7 +22927,11 @@ static double __Pyx_SlowPyString_AsDouble(PyObject *obj) {
|
|
|
22689
22927
|
float_value = PyFloat_FromString(obj, 0);
|
|
22690
22928
|
#endif
|
|
22691
22929
|
if (likely(float_value)) {
|
|
22930
|
+
#if CYTHON_ASSUME_SAFE_MACROS
|
|
22692
22931
|
double value = PyFloat_AS_DOUBLE(float_value);
|
|
22932
|
+
#else
|
|
22933
|
+
double value = PyFloat_AsDouble(float_value);
|
|
22934
|
+
#endif
|
|
22693
22935
|
Py_DECREF(float_value);
|
|
22694
22936
|
return value;
|
|
22695
22937
|
}
|
|
@@ -23139,8 +23381,8 @@ static int __Pyx_fix_up_extension_type_from_spec(PyType_Spec *spec, PyTypeObject
|
|
|
23139
23381
|
|
|
23140
23382
|
/* PyObjectCallNoArg */
|
|
23141
23383
|
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) {
|
|
23142
|
-
PyObject *arg = NULL;
|
|
23143
|
-
return __Pyx_PyObject_FastCall(func,
|
|
23384
|
+
PyObject *arg[2] = {NULL, NULL};
|
|
23385
|
+
return __Pyx_PyObject_FastCall(func, arg + 1, 0 | __Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET);
|
|
23144
23386
|
}
|
|
23145
23387
|
|
|
23146
23388
|
/* PyObjectCallMethod0 */
|
|
@@ -23204,38 +23446,38 @@ static int __Pyx_validate_bases_tuple(const char *type_name, Py_ssize_t dictoffs
|
|
|
23204
23446
|
#endif
|
|
23205
23447
|
return -1;
|
|
23206
23448
|
}
|
|
23207
|
-
|
|
23208
|
-
if (dictoffset == 0) {
|
|
23209
|
-
PyErr_Format(PyExc_TypeError,
|
|
23210
|
-
"extension type '%s.200s': "
|
|
23211
|
-
"unable to validate whether bases have a __dict__ "
|
|
23212
|
-
"when CYTHON_USE_TYPE_SLOTS is off "
|
|
23213
|
-
"(likely because you are building in the limited API). "
|
|
23214
|
-
"Therefore, all extension types with multiple bases "
|
|
23215
|
-
"must add 'cdef dict __dict__' in this compilation mode",
|
|
23216
|
-
type_name);
|
|
23217
|
-
#if CYTHON_AVOID_BORROWED_REFS
|
|
23218
|
-
Py_DECREF(b0);
|
|
23219
|
-
#endif
|
|
23220
|
-
return -1;
|
|
23221
|
-
}
|
|
23222
|
-
#else
|
|
23223
|
-
if (dictoffset == 0 && b->tp_dictoffset)
|
|
23449
|
+
if (dictoffset == 0)
|
|
23224
23450
|
{
|
|
23225
|
-
|
|
23226
|
-
|
|
23227
|
-
|
|
23228
|
-
|
|
23229
|
-
|
|
23230
|
-
|
|
23231
|
-
|
|
23232
|
-
|
|
23451
|
+
Py_ssize_t b_dictoffset = 0;
|
|
23452
|
+
#if CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY
|
|
23453
|
+
b_dictoffset = b->tp_dictoffset;
|
|
23454
|
+
#else
|
|
23455
|
+
PyObject *py_b_dictoffset = PyObject_GetAttrString((PyObject*)b, "__dictoffset__");
|
|
23456
|
+
if (!py_b_dictoffset) goto dictoffset_return;
|
|
23457
|
+
b_dictoffset = PyLong_AsSsize_t(py_b_dictoffset);
|
|
23458
|
+
Py_DECREF(py_b_dictoffset);
|
|
23459
|
+
if (b_dictoffset == -1 && PyErr_Occurred()) goto dictoffset_return;
|
|
23460
|
+
#endif
|
|
23461
|
+
if (b_dictoffset) {
|
|
23462
|
+
{
|
|
23463
|
+
__Pyx_TypeName b_name = __Pyx_PyType_GetName(b);
|
|
23464
|
+
PyErr_Format(PyExc_TypeError,
|
|
23465
|
+
"extension type '%.200s' has no __dict__ slot, "
|
|
23466
|
+
"but base type '" __Pyx_FMT_TYPENAME "' has: "
|
|
23467
|
+
"either add 'cdef dict __dict__' to the extension type "
|
|
23468
|
+
"or add '__slots__ = [...]' to the base type",
|
|
23469
|
+
type_name, b_name);
|
|
23470
|
+
__Pyx_DECREF_TypeName(b_name);
|
|
23471
|
+
}
|
|
23472
|
+
#if !(CYTHON_USE_TYPE_SLOTS || CYTHON_COMPILING_IN_PYPY)
|
|
23473
|
+
dictoffset_return:
|
|
23474
|
+
#endif
|
|
23233
23475
|
#if CYTHON_AVOID_BORROWED_REFS
|
|
23234
|
-
|
|
23476
|
+
Py_DECREF(b0);
|
|
23235
23477
|
#endif
|
|
23236
|
-
|
|
23478
|
+
return -1;
|
|
23479
|
+
}
|
|
23237
23480
|
}
|
|
23238
|
-
#endif
|
|
23239
23481
|
#if CYTHON_AVOID_BORROWED_REFS
|
|
23240
23482
|
Py_DECREF(b0);
|
|
23241
23483
|
#endif
|
|
@@ -23490,10 +23732,10 @@ __PYX_GOOD:
|
|
|
23490
23732
|
#endif
|
|
23491
23733
|
|
|
23492
23734
|
/* TypeImport */
|
|
23493
|
-
#ifndef
|
|
23494
|
-
#define
|
|
23495
|
-
static PyTypeObject *
|
|
23496
|
-
size_t size, size_t alignment, enum
|
|
23735
|
+
#ifndef __PYX_HAVE_RT_ImportType_3_0_10
|
|
23736
|
+
#define __PYX_HAVE_RT_ImportType_3_0_10
|
|
23737
|
+
static PyTypeObject *__Pyx_ImportType_3_0_10(PyObject *module, const char *module_name, const char *class_name,
|
|
23738
|
+
size_t size, size_t alignment, enum __Pyx_ImportType_CheckSize_3_0_10 check_size)
|
|
23497
23739
|
{
|
|
23498
23740
|
PyObject *result = 0;
|
|
23499
23741
|
char warning[200];
|
|
@@ -23547,7 +23789,7 @@ static PyTypeObject *__Pyx_ImportType_3_0_2(PyObject *module, const char *module
|
|
|
23547
23789
|
module_name, class_name, size, basicsize+itemsize);
|
|
23548
23790
|
goto bad;
|
|
23549
23791
|
}
|
|
23550
|
-
if (check_size ==
|
|
23792
|
+
if (check_size == __Pyx_ImportType_CheckSize_Error_3_0_10 &&
|
|
23551
23793
|
((size_t)basicsize > size || (size_t)(basicsize + itemsize) < size)) {
|
|
23552
23794
|
PyErr_Format(PyExc_ValueError,
|
|
23553
23795
|
"%.200s.%.200s size changed, may indicate binary incompatibility. "
|
|
@@ -23555,7 +23797,7 @@ static PyTypeObject *__Pyx_ImportType_3_0_2(PyObject *module, const char *module
|
|
|
23555
23797
|
module_name, class_name, size, basicsize, basicsize+itemsize);
|
|
23556
23798
|
goto bad;
|
|
23557
23799
|
}
|
|
23558
|
-
else if (check_size ==
|
|
23800
|
+
else if (check_size == __Pyx_ImportType_CheckSize_Warn_3_0_10 && (size_t)basicsize > size) {
|
|
23559
23801
|
PyOS_snprintf(warning, sizeof(warning),
|
|
23560
23802
|
"%s.%s size changed, may indicate binary incompatibility. "
|
|
23561
23803
|
"Expected %zd from C header, got %zd from PyObject",
|
|
@@ -23592,7 +23834,7 @@ static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
|
|
|
23592
23834
|
{
|
|
23593
23835
|
#if PY_MAJOR_VERSION >= 3
|
|
23594
23836
|
if (level == -1) {
|
|
23595
|
-
if (
|
|
23837
|
+
if (strchr(__Pyx_MODULE_NAME, '.') != NULL) {
|
|
23596
23838
|
module = PyImport_ImportModuleLevelObject(
|
|
23597
23839
|
name, __pyx_d, empty_dict, from_list, 1);
|
|
23598
23840
|
if (unlikely(!module)) {
|
|
@@ -23918,10 +24160,7 @@ static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bas
|
|
|
23918
24160
|
|
|
23919
24161
|
/* FetchSharedCythonModule */
|
|
23920
24162
|
static PyObject *__Pyx_FetchSharedCythonABIModule(void) {
|
|
23921
|
-
|
|
23922
|
-
if (unlikely(!abi_module)) return NULL;
|
|
23923
|
-
Py_INCREF(abi_module);
|
|
23924
|
-
return abi_module;
|
|
24163
|
+
return __Pyx_PyImport_AddModuleRef((char*) __PYX_ABI_MODULE_NAME);
|
|
23925
24164
|
}
|
|
23926
24165
|
|
|
23927
24166
|
/* FetchCommonType */
|
|
@@ -24082,6 +24321,20 @@ static CYTHON_INLINE PyObject *__Pyx_PyVectorcall_FastCallDict(PyObject *func, _
|
|
|
24082
24321
|
#endif
|
|
24083
24322
|
|
|
24084
24323
|
/* CythonFunctionShared */
|
|
24324
|
+
#if CYTHON_COMPILING_IN_LIMITED_API
|
|
24325
|
+
static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) {
|
|
24326
|
+
if (__Pyx_CyFunction_Check(func)) {
|
|
24327
|
+
return PyCFunction_GetFunction(((__pyx_CyFunctionObject*)func)->func) == (PyCFunction) cfunc;
|
|
24328
|
+
} else if (PyCFunction_Check(func)) {
|
|
24329
|
+
return PyCFunction_GetFunction(func) == (PyCFunction) cfunc;
|
|
24330
|
+
}
|
|
24331
|
+
return 0;
|
|
24332
|
+
}
|
|
24333
|
+
#else
|
|
24334
|
+
static CYTHON_INLINE int __Pyx__IsSameCyOrCFunction(PyObject *func, void *cfunc) {
|
|
24335
|
+
return __Pyx_CyOrPyCFunction_Check(func) && __Pyx_CyOrPyCFunction_GET_FUNCTION(func) == (PyCFunction) cfunc;
|
|
24336
|
+
}
|
|
24337
|
+
#endif
|
|
24085
24338
|
static CYTHON_INLINE void __Pyx__CyFunction_SetClassObj(__pyx_CyFunctionObject* f, PyObject* classobj) {
|
|
24086
24339
|
#if PY_VERSION_HEX < 0x030900B1 || CYTHON_COMPILING_IN_LIMITED_API
|
|
24087
24340
|
__Pyx_Py_XDECREF_SET(
|
|
@@ -24891,7 +25144,7 @@ static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS(PyObject *func,
|
|
|
24891
25144
|
default:
|
|
24892
25145
|
return NULL;
|
|
24893
25146
|
}
|
|
24894
|
-
return ((
|
|
25147
|
+
return ((__Pyx_PyCFunctionFastWithKeywords)(void(*)(void))def->ml_meth)(self, args, nargs, kwnames);
|
|
24895
25148
|
}
|
|
24896
25149
|
static PyObject * __Pyx_CyFunction_Vectorcall_FASTCALL_KEYWORDS_METHOD(PyObject *func, PyObject *const *args, size_t nargsf, PyObject *kwnames)
|
|
24897
25150
|
{
|
|
@@ -25484,8 +25737,8 @@ static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject
|
|
|
25484
25737
|
Py_DECREF(replace);
|
|
25485
25738
|
return result;
|
|
25486
25739
|
}
|
|
25487
|
-
#if __PYX_LIMITED_VERSION_HEX < 0x030780000
|
|
25488
25740
|
PyErr_Clear();
|
|
25741
|
+
#if __PYX_LIMITED_VERSION_HEX < 0x030780000
|
|
25489
25742
|
{
|
|
25490
25743
|
PyObject *compiled = NULL, *result = NULL;
|
|
25491
25744
|
if (unlikely(PyDict_SetItemString(scratch_dict, "code", code))) return NULL;
|
|
@@ -25505,6 +25758,8 @@ static PyObject *__Pyx_PyCode_Replace_For_AddTraceback(PyObject *code, PyObject
|
|
|
25505
25758
|
if (result) Py_INCREF(result);
|
|
25506
25759
|
return result;
|
|
25507
25760
|
}
|
|
25761
|
+
#else
|
|
25762
|
+
return NULL;
|
|
25508
25763
|
#endif
|
|
25509
25764
|
}
|
|
25510
25765
|
static void __Pyx_AddTraceback(const char *funcname, int c_line,
|
|
@@ -25602,7 +25857,7 @@ static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
|
|
|
25602
25857
|
#else
|
|
25603
25858
|
py_code = PyCode_NewEmpty(filename, funcname, py_line);
|
|
25604
25859
|
#endif
|
|
25605
|
-
Py_XDECREF(py_funcname);
|
|
25860
|
+
Py_XDECREF(py_funcname);
|
|
25606
25861
|
return py_code;
|
|
25607
25862
|
bad:
|
|
25608
25863
|
Py_XDECREF(py_funcname);
|
|
@@ -26151,7 +26406,7 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
|
|
|
26151
26406
|
#endif
|
|
26152
26407
|
if (likely(v)) {
|
|
26153
26408
|
int ret = -1;
|
|
26154
|
-
#if !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray)
|
|
26409
|
+
#if PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray)
|
|
26155
26410
|
int one = 1; int is_little = (int)*(unsigned char *)&one;
|
|
26156
26411
|
unsigned char *bytes = (unsigned char *)&val;
|
|
26157
26412
|
ret = _PyLong_AsByteArray((PyLongObject *)v,
|
|
@@ -26287,13 +26542,13 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
|
|
|
26287
26542
|
{
|
|
26288
26543
|
int one = 1; int little = (int)*(unsigned char *)&one;
|
|
26289
26544
|
unsigned char *bytes = (unsigned char *)&value;
|
|
26290
|
-
#if !CYTHON_COMPILING_IN_LIMITED_API
|
|
26545
|
+
#if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
|
|
26291
26546
|
return _PyLong_FromByteArray(bytes, sizeof(int),
|
|
26292
26547
|
little, !is_unsigned);
|
|
26293
26548
|
#else
|
|
26294
26549
|
PyObject *from_bytes, *result = NULL;
|
|
26295
26550
|
PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
|
|
26296
|
-
from_bytes = PyObject_GetAttrString((PyObject*)&
|
|
26551
|
+
from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
|
|
26297
26552
|
if (!from_bytes) return NULL;
|
|
26298
26553
|
py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(int));
|
|
26299
26554
|
if (!py_bytes) goto limited_bad;
|
|
@@ -26301,16 +26556,18 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
|
|
|
26301
26556
|
if (!order_str) goto limited_bad;
|
|
26302
26557
|
arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
|
|
26303
26558
|
if (!arg_tuple) goto limited_bad;
|
|
26304
|
-
|
|
26305
|
-
|
|
26306
|
-
|
|
26559
|
+
if (!is_unsigned) {
|
|
26560
|
+
kwds = PyDict_New();
|
|
26561
|
+
if (!kwds) goto limited_bad;
|
|
26562
|
+
if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
|
|
26563
|
+
}
|
|
26307
26564
|
result = PyObject_Call(from_bytes, arg_tuple, kwds);
|
|
26308
26565
|
limited_bad:
|
|
26309
|
-
Py_XDECREF(from_bytes);
|
|
26310
|
-
Py_XDECREF(py_bytes);
|
|
26311
|
-
Py_XDECREF(order_str);
|
|
26312
|
-
Py_XDECREF(arg_tuple);
|
|
26313
26566
|
Py_XDECREF(kwds);
|
|
26567
|
+
Py_XDECREF(arg_tuple);
|
|
26568
|
+
Py_XDECREF(order_str);
|
|
26569
|
+
Py_XDECREF(py_bytes);
|
|
26570
|
+
Py_XDECREF(from_bytes);
|
|
26314
26571
|
return result;
|
|
26315
26572
|
#endif
|
|
26316
26573
|
}
|
|
@@ -26349,13 +26606,13 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
|
|
|
26349
26606
|
{
|
|
26350
26607
|
int one = 1; int little = (int)*(unsigned char *)&one;
|
|
26351
26608
|
unsigned char *bytes = (unsigned char *)&value;
|
|
26352
|
-
#if !CYTHON_COMPILING_IN_LIMITED_API
|
|
26609
|
+
#if !CYTHON_COMPILING_IN_LIMITED_API && PY_VERSION_HEX < 0x030d0000
|
|
26353
26610
|
return _PyLong_FromByteArray(bytes, sizeof(long),
|
|
26354
26611
|
little, !is_unsigned);
|
|
26355
26612
|
#else
|
|
26356
26613
|
PyObject *from_bytes, *result = NULL;
|
|
26357
26614
|
PyObject *py_bytes = NULL, *arg_tuple = NULL, *kwds = NULL, *order_str = NULL;
|
|
26358
|
-
from_bytes = PyObject_GetAttrString((PyObject*)&
|
|
26615
|
+
from_bytes = PyObject_GetAttrString((PyObject*)&PyLong_Type, "from_bytes");
|
|
26359
26616
|
if (!from_bytes) return NULL;
|
|
26360
26617
|
py_bytes = PyBytes_FromStringAndSize((char*)bytes, sizeof(long));
|
|
26361
26618
|
if (!py_bytes) goto limited_bad;
|
|
@@ -26363,16 +26620,18 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
|
|
|
26363
26620
|
if (!order_str) goto limited_bad;
|
|
26364
26621
|
arg_tuple = PyTuple_Pack(2, py_bytes, order_str);
|
|
26365
26622
|
if (!arg_tuple) goto limited_bad;
|
|
26366
|
-
|
|
26367
|
-
|
|
26368
|
-
|
|
26623
|
+
if (!is_unsigned) {
|
|
26624
|
+
kwds = PyDict_New();
|
|
26625
|
+
if (!kwds) goto limited_bad;
|
|
26626
|
+
if (PyDict_SetItemString(kwds, "signed", __Pyx_NewRef(Py_True))) goto limited_bad;
|
|
26627
|
+
}
|
|
26369
26628
|
result = PyObject_Call(from_bytes, arg_tuple, kwds);
|
|
26370
26629
|
limited_bad:
|
|
26371
|
-
Py_XDECREF(from_bytes);
|
|
26372
|
-
Py_XDECREF(py_bytes);
|
|
26373
|
-
Py_XDECREF(order_str);
|
|
26374
|
-
Py_XDECREF(arg_tuple);
|
|
26375
26630
|
Py_XDECREF(kwds);
|
|
26631
|
+
Py_XDECREF(arg_tuple);
|
|
26632
|
+
Py_XDECREF(order_str);
|
|
26633
|
+
Py_XDECREF(py_bytes);
|
|
26634
|
+
Py_XDECREF(from_bytes);
|
|
26376
26635
|
return result;
|
|
26377
26636
|
#endif
|
|
26378
26637
|
}
|
|
@@ -26564,7 +26823,7 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
|
|
|
26564
26823
|
#endif
|
|
26565
26824
|
if (likely(v)) {
|
|
26566
26825
|
int ret = -1;
|
|
26567
|
-
#if !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray)
|
|
26826
|
+
#if PY_VERSION_HEX < 0x030d0000 && !(CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_LIMITED_API) || defined(_PyLong_AsByteArray)
|
|
26568
26827
|
int one = 1; int is_little = (int)*(unsigned char *)&one;
|
|
26569
26828
|
unsigned char *bytes = (unsigned char *)&val;
|
|
26570
26829
|
ret = _PyLong_AsByteArray((PyLongObject *)v,
|
|
@@ -27122,9 +27381,22 @@ PyObject *__Pyx_PyGen_Send(PyGenObject *gen, PyObject *arg) {
|
|
|
27122
27381
|
PyErr_SetNone(PyExc_StopIteration);
|
|
27123
27382
|
}
|
|
27124
27383
|
else {
|
|
27384
|
+
#if PY_VERSION_HEX < 0x030d00A1
|
|
27125
27385
|
_PyGen_SetStopIterationValue(result);
|
|
27386
|
+
#else
|
|
27387
|
+
if (!PyTuple_Check(result) && !PyExceptionInstance_Check(result)) {
|
|
27388
|
+
PyErr_SetObject(PyExc_StopIteration, result);
|
|
27389
|
+
} else {
|
|
27390
|
+
PyObject *exc = __Pyx_PyObject_CallOneArg(PyExc_StopIteration, result);
|
|
27391
|
+
if (likely(exc != NULL)) {
|
|
27392
|
+
PyErr_SetObject(PyExc_StopIteration, exc);
|
|
27393
|
+
Py_DECREF(exc);
|
|
27394
|
+
}
|
|
27395
|
+
}
|
|
27396
|
+
#endif
|
|
27126
27397
|
}
|
|
27127
|
-
|
|
27398
|
+
Py_DECREF(result);
|
|
27399
|
+
result = NULL;
|
|
27128
27400
|
}
|
|
27129
27401
|
return result;
|
|
27130
27402
|
#endif
|
|
@@ -27905,41 +28177,50 @@ static int __pyx_Generator_init(PyObject *module) {
|
|
|
27905
28177
|
}
|
|
27906
28178
|
|
|
27907
28179
|
/* CheckBinaryVersion */
|
|
27908
|
-
static
|
|
27909
|
-
|
|
27910
|
-
|
|
27911
|
-
|
|
27912
|
-
|
|
27913
|
-
|
|
27914
|
-
|
|
27915
|
-
|
|
27916
|
-
|
|
27917
|
-
|
|
27918
|
-
|
|
27919
|
-
|
|
27920
|
-
|
|
28180
|
+
static unsigned long __Pyx_get_runtime_version(void) {
|
|
28181
|
+
#if __PYX_LIMITED_VERSION_HEX >= 0x030B00A4
|
|
28182
|
+
return Py_Version & ~0xFFUL;
|
|
28183
|
+
#else
|
|
28184
|
+
const char* rt_version = Py_GetVersion();
|
|
28185
|
+
unsigned long version = 0;
|
|
28186
|
+
unsigned long factor = 0x01000000UL;
|
|
28187
|
+
unsigned int digit = 0;
|
|
28188
|
+
int i = 0;
|
|
28189
|
+
while (factor) {
|
|
28190
|
+
while ('0' <= rt_version[i] && rt_version[i] <= '9') {
|
|
28191
|
+
digit = digit * 10 + (unsigned int) (rt_version[i] - '0');
|
|
28192
|
+
++i;
|
|
28193
|
+
}
|
|
28194
|
+
version += factor * digit;
|
|
28195
|
+
if (rt_version[i] != '.')
|
|
27921
28196
|
break;
|
|
27922
|
-
|
|
28197
|
+
digit = 0;
|
|
28198
|
+
factor >>= 8;
|
|
28199
|
+
++i;
|
|
27923
28200
|
}
|
|
27924
|
-
|
|
27925
|
-
|
|
28201
|
+
return version;
|
|
28202
|
+
#endif
|
|
28203
|
+
}
|
|
28204
|
+
static int __Pyx_check_binary_version(unsigned long ct_version, unsigned long rt_version, int allow_newer) {
|
|
28205
|
+
const unsigned long MAJOR_MINOR = 0xFFFF0000UL;
|
|
28206
|
+
if ((rt_version & MAJOR_MINOR) == (ct_version & MAJOR_MINOR))
|
|
28207
|
+
return 0;
|
|
28208
|
+
if (likely(allow_newer && (rt_version & MAJOR_MINOR) > (ct_version & MAJOR_MINOR)))
|
|
28209
|
+
return 1;
|
|
28210
|
+
{
|
|
27926
28211
|
char message[200];
|
|
27927
|
-
for (i=0; i<4; ++i) {
|
|
27928
|
-
if (rt_from_call[i] == '.') {
|
|
27929
|
-
if (found_dot) break;
|
|
27930
|
-
found_dot = 1;
|
|
27931
|
-
} else if (rt_from_call[i] < '0' || rt_from_call[i] > '9') {
|
|
27932
|
-
break;
|
|
27933
|
-
}
|
|
27934
|
-
rtversion[i] = rt_from_call[i];
|
|
27935
|
-
}
|
|
27936
28212
|
PyOS_snprintf(message, sizeof(message),
|
|
27937
|
-
"compile time version %
|
|
27938
|
-
"
|
|
27939
|
-
|
|
28213
|
+
"compile time Python version %d.%d "
|
|
28214
|
+
"of module '%.100s' "
|
|
28215
|
+
"%s "
|
|
28216
|
+
"runtime version %d.%d",
|
|
28217
|
+
(int) (ct_version >> 24), (int) ((ct_version >> 16) & 0xFF),
|
|
28218
|
+
__Pyx_MODULE_NAME,
|
|
28219
|
+
(allow_newer) ? "was newer than" : "does not match",
|
|
28220
|
+
(int) (rt_version >> 24), (int) ((rt_version >> 16) & 0xFF)
|
|
28221
|
+
);
|
|
27940
28222
|
return PyErr_WarnEx(NULL, message, 1);
|
|
27941
28223
|
}
|
|
27942
|
-
return 0;
|
|
27943
28224
|
}
|
|
27944
28225
|
|
|
27945
28226
|
/* InitStrings */
|
|
@@ -27985,8 +28266,24 @@ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
|
|
|
27985
28266
|
return 0;
|
|
27986
28267
|
}
|
|
27987
28268
|
|
|
28269
|
+
#include <string.h>
|
|
28270
|
+
static CYTHON_INLINE Py_ssize_t __Pyx_ssize_strlen(const char *s) {
|
|
28271
|
+
size_t len = strlen(s);
|
|
28272
|
+
if (unlikely(len > (size_t) PY_SSIZE_T_MAX)) {
|
|
28273
|
+
PyErr_SetString(PyExc_OverflowError, "byte string is too long");
|
|
28274
|
+
return -1;
|
|
28275
|
+
}
|
|
28276
|
+
return (Py_ssize_t) len;
|
|
28277
|
+
}
|
|
27988
28278
|
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
|
|
27989
|
-
|
|
28279
|
+
Py_ssize_t len = __Pyx_ssize_strlen(c_str);
|
|
28280
|
+
if (unlikely(len < 0)) return NULL;
|
|
28281
|
+
return __Pyx_PyUnicode_FromStringAndSize(c_str, len);
|
|
28282
|
+
}
|
|
28283
|
+
static CYTHON_INLINE PyObject* __Pyx_PyByteArray_FromString(const char* c_str) {
|
|
28284
|
+
Py_ssize_t len = __Pyx_ssize_strlen(c_str);
|
|
28285
|
+
if (unlikely(len < 0)) return NULL;
|
|
28286
|
+
return PyByteArray_FromStringAndSize(c_str, len);
|
|
27990
28287
|
}
|
|
27991
28288
|
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
|
|
27992
28289
|
Py_ssize_t ignore;
|