biotite 0.38.0__cp310-cp310-win_amd64.whl → 0.40.0__cp310-cp310-win_amd64.whl

biotite/structure/info/nucleotides.py

@@ -1,39 +0,0 @@
-# This source code is part of the Biotite package and is distributed
-# under the 3-Clause BSD License. Please see 'LICENSE.rst' for further
-# information.
-
-__name__ = "biotite.structure.info"
-__author__ = "Tom David Müller"
-__all__ = ["nucleotide_names"]
-
-import json
-import numpy as np
-from os.path import join, dirname, realpath
-
-
-_info_dir = dirname(realpath(__file__))
-# Data is taken from
-# ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif
-# (2022/09/17)
-# The json-file contains all three-letter-codes of the components where
-# the data item `_chem_comp.type` is equal to one of the following
-# values:
-# DNA LINKING; DNA OH 3 PRIME TERMINUS; DNA OH 3 prime terminus; 
-# DNA OH 5 prime terminus; DNA linking; L-DNA LINKING; L-DNA linking; 
-# L-RNA LINKING; L-RNA linking; RNA LINKING; RNA OH 3 prime terminus; 
-# RNA OH 5 prime terminus; RNA linking
-with open(join(_info_dir, "nucleotides.json"), "r") as file:
-    _nucleotides = json.load(file)
-
-def nucleotide_names():
-    """
-    Get a list of nucleotide three-letter codes according to the PDB
-    chemical compound dictionary.
-
-    Returns
-    -------
-    nucleotide_names : list
-        A list of three-letter-codes containing residues that are
-        DNA/RNA monomers.
-    """
-    return _nucleotides