bioregistry 0.13.9__py3-none-any.whl → 0.13.11__py3-none-any.whl

bioregistry/data/bioregistry.json

@@ -6423,10 +6423,13 @@
     "uri_format": "http://opendata.inra.fr/ATOL/ATOL_$1"
   },
   "atomistic": {
+    "description": "An EMMO-based domain ontology for atomistic and electronic modelling.",
     "example": "08fd7117-66ac-5b6d-b65e-34a826675877",
+    "license": "CC-BY-4.0",
     "mappings": {
       "tib": "atomistic"
     },
+    "repository": "https://github.com/emmo-repo/domain-atomistic",
     "tib": {
       "description": "An EMMO-based domain ontology for atomistic and electronic modelling.Atomistic is released under the Creative Commons Attribution 4.0 International license (CC BY 4.0).",
       "download_rdf": "https://raw.githubusercontent.com/emmo-repo/domain-atomistic/master/atomistic.ttl",
@@ -8447,6 +8450,13 @@
     "uri_format": "http://id.loc.gov/ontologies/bibframe/$1"
   },
   "bibo": {
+    "bartoc": {
+      "abbreviation": "bibo",
+      "description": "The Bibliographic Ontology describes bibliographic things on the semantic Web in RDF. This ontology can be used as a citation ontology, as a document classification ontology, or simply as a way to describe any kind of document in RDF. It has been inspired by many existing document description metadata formats, and can be used as a common ground for converting other bibliographic data sources.",
+      "homepage": "https://www.dublincore.org/specifications/bibo/bibo/",
+      "name": "The Bibliographic Ontology",
+      "prefix": "17844"
+    },
     "contact": {
       "email": "fred@fgiasson.com",
       "github": "fgiasson",
@@ -8477,6 +8487,7 @@
       "uri_prefix": "http://purl.org/ontology/bibo/$1"
     },
     "mappings": {
+      "bartoc": "17844",
       "lov": "bibo",
       "zazuko": "bibo"
     },
@@ -10915,15 +10926,38 @@
       "orcid": "0000-0003-4423-4370"
     },
     "description": "Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]",
+    "download_rdf": "https://bioschemas.org/types/bioschemas_types.ttl",
     "example": "Dataset",
     "homepage": "https://bioschemas.org",
     "mappings": {
       "biolink": "bioschemas"
     },
     "name": "BioSchemas",
+    "providers": [
+      {
+        "code": "draft",
+        "description": "BioSchemas makes a difference between its draft and released terms by putting them in different namespaces. This causes problems when consuming it, so this URI format maps them all into a unified semantic space",
+        "homepage": "https://bioschemas.org",
+        "name": "BioSchemas Draft",
+        "uri_format": "https://bioschemas.org/draft_terms/$1"
+      },
+      {
+        "code": "w3id",
+        "uri_format": "https://w3id.org/bioschemas/terms/$1"
+      },
+      {
+        "code": "term",
+        "uri_format": "https://bioschemas.org/terms/$1"
+      },
+      {
+        "code": "biothings",
+        "uri_format": "https://discovery.biothings.io/view/bioschemastypes/$1"
+      }
+    ],
     "repository": "https://github.com/BioSchemas/specifications",
     "synonyms": [
-      "bioschema"
+      "bioschema",
+      "bioschemas_draft"
     ],
     "twitter": "bioschemas",
     "uri_format": "https://bioschemas.org/profiles/$1"
@@ -16942,6 +16976,10 @@
       "preferredPrefix": "CHEBI",
       "prefix": "chebi",
       "publications": [
+        {
+          "id": "https://doi.org/10.1093/nar/gkaf1271",
+          "title": "ChEBI: re-engineered for a sustainable future"
+        },
         {
           "id": "https://www.ncbi.nlm.nih.gov/pubmed/26467479",
           "title": "ChEBI in 2016: Improved services and an expanding collection of metabolites."
@@ -16957,7 +16995,7 @@
       "name": "Chemical Entities of Biological Interest",
       "prefix": "chebi",
       "tracker": "https://github.com/ebi-chebi/ChEBI/issues",
-      "version": "246"
+      "version": "247"
     },
     "ontobee": {
       "library": "Foundry",
@@ -18388,6 +18426,8 @@
       "name": "Charles Tapley Hoyt",
       "orcid": "0000-0003-4423-4370"
     },
+    "description": "A data model for managing information about chemical entities, ranging from atoms through molecules to complex mixtures.",
+    "download_owl": "https://raw.githubusercontent.com/chemkg/chemrof/main/schema/owl/chemrof.owl.ttl",
     "example": "FullySpecifiedAtom",
     "homepage": "https://chemkg.github.io/chemrof/",
     "mappings": {
@@ -19718,7 +19758,7 @@
   "cl": {
     "aberowl": {
       "description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.",
-      "download_owl": "http://aber-owl.net/media/ontologies/CL/116/cl.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/CL/117/cl.owl",
       "homepage": "https://obophenotype.github.io/cell-ontology/",
       "name": "Cell Ontology",
       "prefix": "CL"
@@ -19908,8 +19948,8 @@
       "name": "Cell Ontology",
       "prefix": "cl",
       "tracker": "https://github.com/obophenotype/cell-ontology/issues",
-      "version": "2025-11-03",
-      "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2025-11-03/cl.owl"
+      "version": "2025-11-25",
+      "version.iri": "http://purl.obolibrary.org/obo/cl/releases/2025-11-25/cl.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -20982,7 +21022,7 @@
   "cmo": {
     "aberowl": {
       "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
-      "download_owl": "http://aber-owl.net/media/ontologies/CMO/164/cmo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/CMO/165/cmo.owl",
       "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
       "name": "Clinical measurement ontology",
       "prefix": "CMO"
@@ -21092,8 +21132,8 @@
       "name": "Clinical measurement ontology",
       "prefix": "cmo",
       "tracker": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues",
-      "version": "2.257",
-      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.257/cmo.owl"
+      "version": "2.259",
+      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.259/cmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -26657,7 +26697,7 @@
       "domains": [
         "centrally registered identifier"
       ],
-      "homepage": "https://www.cstr.cn/doc/specification/",
+      "homepage": "https://www.cstr.cn/doc/specification",
       "name": "Common Science and Technology Resource Identifier",
       "prefix": "FAIRsharing.f0d465",
       "subjects": [
@@ -33178,7 +33218,7 @@
   "doid": {
     "aberowl": {
       "description": "An ontology for describing the classification of human diseases organized by etiology.",
-      "download_owl": "http://aber-owl.net/media/ontologies/DOID/700/doid.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/DOID/701/doid.owl",
       "homepage": "https://disease-ontology.org",
       "name": "Human Disease Ontology",
       "prefix": "DOID"
@@ -33442,8 +33482,8 @@
       "name": "Human Disease Ontology",
       "prefix": "doid",
       "tracker": "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues",
-      "version": "2025-10-31",
-      "version.iri": "http://purl.obolibrary.org/obo/doid/releases/2025-10-31/translations/doid-international.owl"
+      "version": "2025-11-25",
+      "version.iri": "http://purl.obolibrary.org/obo/doid/releases/2025-11-25/translations/doid-international.owl"
     },
     "ontobee": {
       "library": "Foundry",
@@ -36361,6 +36401,7 @@
       "integbio": "nbdc00508",
       "miriam": "ec-code",
       "n2t": "ec-code",
+      "ols": "ec",
       "pathguide": "106",
       "prefixcommons": "intenz",
       "re3data": "r3d100010803",
@@ -36408,6 +36449,16 @@
       "uri_format": "https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=$1"
     },
     "name": "Enzyme Nomenclature",
+    "ols": {
+      "contact": "kristian.axelsen@sib.swiss",
+      "description": "The Enzyme Nomenclature (also known as the Enzyme Commission Code) is a species-agnostic controlled vocabulary for specific enzymes and an associated hierarchical classification into 7 main categories.\n\nThe Enzyme Nomenclature is maintained by the [Nomenclature Committee](https://iubmb.org/about/committees/nomenclature-committee/) of the International Union of Biochemistry and Molecular Biology (IUBMB). A detailed history of the nomenclature since the 1950s can be found [here](https://iubmb.qmul.ac.uk/enzyme/history.html).\n\nThere are few notable resources providing access to the Enzyme Nomenclature:\n\n<table class=\"table table-striped\"><thead><tr><th>Website</th><th>Homepage</td><th>Notes</td></tr></thead><tbody><tr><td>ExplorEnz</td><td><a href=\"https://www.enzyme-database.org\">https://www.enzyme-database.org</a></td><td>This is the resource officially recommended by IUBMB</td></tr><tr><td>IUBMB (via by Queen Mary)</td><td><a href=\"https://iubmb.qmul.ac.uk/enzyme\">https://iubmb.qmul.ac.uk/enzyme</a></td><td>This is a web-based version of the <a href=\"https://archive.org/details/enzymenomenclatu0000inte_d6c2\">1992 publication</a>.</td></tr><tr><td>IntEnz</td><td><a href=\"https://www.ebi.ac.uk/intenz\">https://www.ebi.ac.uk/intenz</a></td><td>Shutdown in 2024</td></tr><tr><td>ExPaSy</td><td><a href=\"https://enzyme.expasy.org\">https://enzyme.expasy.org</a></td></tr><tr><td>EnzymePortal</td><td><a href=\"https://www.ebi.ac.uk/enzymeportal\">https://www.ebi.ac.uk/enzymeportal</a></td><td></td></tr></tbody></table> Licensed under CC-BY-4.0.",
+      "download_owl": "https://w3id.org/biopragmatics/resources/ec/ec.owl",
+      "homepage": "https://www.enzyme-database.org/",
+      "name": "Enzyme Nomenclature",
+      "prefix": "ec",
+      "uri_format": "https://www.enzyme-database.org/query.php?ec=$1",
+      "version.iri": "https://w3id.org/biopragmatics/resources/ec/2025-04-09/ec.ofn"
+    },
     "owners": [
       {
         "name": "International Union of Biochemistry and Molecular Biology",
@@ -39764,6 +39815,31 @@
     "homepage": "https://www.ema.europa.eu/en/medicines",
     "name": "European Medicines Evaluation Agency"
   },
+  "emg": {
+    "contact": {
+      "email": "oonagh.mannix@helmholtz-berlin.de",
+      "name": "Oonagh Brendike-Mannix",
+      "orcid": "0000-0003-0575-2853"
+    },
+    "contributor": {
+      "email": "cthoyt@gmail.com",
+      "github": "cthoyt",
+      "name": "Charles Tapley Hoyt",
+      "orcid": "0000-0003-4423-4370"
+    },
+    "description": "The Electron Microscopy (EM) Glossary is a widespread community effort to harmonize terminology in the electron and ion microscopies. It is created in a not-for profit collaboration between academic and non-university research institutions including domain and metadata experts. It provides harmonized terminology for application level semantic artifacts to source from and align with. [from homepage]",
+    "download_owl": "https://owl.emglossary.helmholtz-metadaten.de/ontology.owl",
+    "download_rdf": "https://owl.emglossary.helmholtz-metadaten.de/ontology.ttl",
+    "example": "00000005",
+    "homepage": "https://purls.helmholtz-metadaten.de/emg",
+    "license": "CC-BY-4.0",
+    "logo": "https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/raw/main/EMGlossary.png",
+    "name": "Electron Microscopy Glossary",
+    "pattern": "^\\d{8}$",
+    "rdf_uri_format": "https://purls.helmholtz-metadaten.de/emg/EMG_$1",
+    "repository": "https://codebase.helmholtz.cloud/em_glossary/em_glossary",
+    "uri_format": "https://purls.helmholtz-metadaten.de/emg/EMG_$1"
+  },
   "emi": {
     "contact": {
       "email": "Tarcisio.Mendes@sib.swiss",
@@ -47534,7 +47610,7 @@
     "bartoc": {
       "abbreviation": "FMA",
       "description": "The Foundational Model of Anatomy Ontology (FMA) is an evolving computer-based knowledge source for biomedical informatics; it is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body in a form that is understandable to humans and is also navigable, parseable and interpretable by machine-based systems. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. Its ontological framework can be applied and extended to all other species.",
-      "homepage": "http://sig.biostr.washington.edu/projects/fm/",
+      "homepage": "http://si.washington.edu/projects/fma/",
       "name": "Foundational Model of Anatomy",
       "prefix": "571",
       "wikidata_database": "Q1406710"
@@ -47723,11 +47799,13 @@
     },
     "ols": {
       "description": "This is currently a slimmed down version of FMA",
-      "download_owl": "http://purl.obolibrary.org/obo/fma.owl",
+      "download_owl": "http://purl.org/sig/ont/fma.owl",
       "homepage": "http://si.washington.edu/projects/fma",
       "name": "Foundational Model of Anatomy Ontology (subset)",
       "prefix": "fma",
-      "tracker": "https://bitbucket.org/uwsig/fma/issues"
+      "tracker": "https://bitbucket.org/uwsig/fma/issues",
+      "version": "5.0.0",
+      "version.iri": "http://purl.org/sig/ont/fma_5.0.0.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -49473,12 +49551,43 @@
     "description": "The Generative Artificial Intelligence Delegation Taxonomy (GAIDeT) assigns identifiers to contributor roles as an extension to the Contributor Roles Taxonomy (CRediT) to support promoting transparency and accountability in academic publishing when AI contribtors are involved in research. It is operationalized in the [GAIDeT Declaration Generator](https://panbibliotekar.github.io/gaidet-declaration/), an interactive tool for researchers to disclose the delegation of tasks to generative AI (GAI) tools in accordance with the GAIDeT taxonomy.",
     "download_owl": "https://w3id.org/gaidet/gaidet.owl",
     "example": "0000001",
+    "fairsharing": {
+      "abbreviation": "GAIDeT",
+      "contact": {
+        "email": "serhii.nazarovets@gmail.com",
+        "name": "Serhii Nazarovets ",
+        "orcid": "0000-0002-5067-4498"
+      },
+      "description": "GAIDeT (Generative AI Delegation Taxonomy) is a taxonomy and ontology for transparently disclosing which research and writing tasks were delegated to generative AI tools. GAIDeT provides a structured framework for documenting GAI’s role in scholarly research. It classifies research activities into key domains – conceptualization, literature review, methodology, data analysis, writing, supervision, and ethical review – ensuring transparency and human accountability.\n",
+      "homepage": "https://doi.org/10.1080/08989621.2025.2544331",
+      "name": "Generative AI Delegation Taxonomy",
+      "prefix": "FAIRsharing.23b8a3",
+      "publications": [
+        {
+          "doi": "10.1080/08989621.2025.2544331",
+          "title": "GAIDeT (Generative AI Delegation Taxonomy): A taxonomy for humans to delegate tasks to generative artificial intelligence in scientific research and publishing",
+          "year": 2025
+        },
+        {
+          "doi": "10.59350/psjb9-z1x39",
+          "title": "GAIDeT: a practical taxonomy for declaring AI use in research and publishing",
+          "year": 2025
+        }
+      ],
+      "repository": "https://github.com/panbibliotekar/gaidet-declaration",
+      "subjects": [
+        "Artificial Intelligence"
+      ]
+    },
     "homepage": "https://github.com/panbibliotekar/gaidet-declaration",
     "keywords": [
       "attribution",
       "contributor roles",
       "delegation"
     ],
+    "mappings": {
+      "fairsharing": "FAIRsharing.23b8a3"
+    },
     "name": "Generative Artificial Intelligence Delegation Taxonomy",
     "pattern": "^\\d{7}$",
     "publications": [
@@ -57032,6 +57141,72 @@
     },
     "name": "Genotype-Tissue Expression"
   },
+  "gtn": {
+    "contact": {
+      "email": "saskia.hiltemann@rz.uni-freiburg.de",
+      "github": "shiltemann",
+      "name": "Saskia Hiltemann",
+      "orcid": "0000-0003-3803-468X"
+    },
+    "contributor": {
+      "email": "d.djamalova@fz-juelich.de",
+      "github": "ddjamalova",
+      "name": "Dilfuza Djamalova",
+      "orcid": "0009-0004-7782-2894"
+    },
+    "contributor_extras": [
+      {
+        "email": "jacobo.miranda@embl.de",
+        "github": "mirandaembl",
+        "name": "Jacobo Miranda",
+        "orcid": "0009-0005-0673-021X"
+      }
+    ],
+    "description": "Identifiers in the GTN correspond to training materials in various formats (markdown, slides, video). The users can apply learned concepts directly within the framework via galaxy workflows.",
+    "example": "T00148",
+    "github_request_issue": 1778,
+    "homepage": "https://training.galaxyproject.org/training-material/",
+    "keywords": [
+      "galaxy",
+      "learning materials",
+      "learning resources",
+      "training materials"
+    ],
+    "license": "CC-BY-4.0",
+    "name": "Galaxy Training Network",
+    "pattern": "^[A-Z]\\d+$",
+    "publications": [
+      {
+        "doi": "10.1371/journal.pcbi.1010752",
+        "pmc": "PMC9829167",
+        "pubmed": "36622853",
+        "title": "Galaxy Training: A powerful framework for teaching!",
+        "year": 2023
+      },
+      {
+        "doi": "10.1371/journal.pcbi.1007854",
+        "pmc": "PMC7241697",
+        "pubmed": "32437350",
+        "title": "Ten simple rules for making training materials FAIR",
+        "year": 2020
+      },
+      {
+        "doi": "10.1016/j.cels.2018.05.012",
+        "pmc": "PMC6296361",
+        "pubmed": "29953864",
+        "title": "Community-Driven Data Analysis Training for Biology",
+        "year": 2018
+      }
+    ],
+    "repository": "https://github.com/galaxyproject/training-material",
+    "reviewer": {
+      "email": "cthoyt@gmail.com",
+      "github": "cthoyt",
+      "name": "Charles Tapley Hoyt",
+      "orcid": "0000-0003-4423-4370"
+    },
+    "uri_format": "https://gxy.io/GTN:$1"
+  },
   "gtr.condition": {
     "appears_in": [
       "mondo"
@@ -58488,7 +58663,7 @@
     "integbio": {
       "alt_name": "The Human Gene Mutation Database",
       "description": "HGMD is a integrated database of germ-line mutations which are underlying or associated with human inherited disease in nuclear genes. This database contains all germ-line disease-causing mutations and disease-associated/functional polymorphisms reported in the literature. Furthermore, it includes the data about single base-pair substitutions in coding (e.g. missense and nonsense), regulatory and splicing-relevant regions of human nuclear genes, micro-deletions and micro-insertions, indels, repeat expansions, as well as gross gene lesions (deletions, insertions and duplications) and complex gene rearrangements. These data are provided in a readily accessible format to all interested parties, whether they are from an academic, clinical or commercial background.",
-      "homepage": "http://www.hgmd.org/",
+      "homepage": "https://www.hgmd.cf.ac.uk",
       "information_keywords": [
         "Sequence"
       ],
@@ -60713,8 +60888,8 @@
       "name": "Human Phenotype Ontology",
       "prefix": "hp",
       "tracker": "https://github.com/obophenotype/human-phenotype-ontology/issues/",
-      "version": "2025-10-22",
-      "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2025-10-22/hp-international.owl"
+      "version": "2025-11-24",
+      "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2025-11-24/hp-international.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -72013,6 +72188,74 @@
     "pattern": "^\\d{7}$",
     "uri_format": "http://purl.obolibrary.org/obo/kestrelo_$1"
   },
+  "kim.amb": {
+    "contact": {
+      "github": "acka47",
+      "name": "Adrian Pohl",
+      "orcid": "0000-0001-9083-7442"
+    },
+    "contributor": {
+      "email": "m.voigt@hzdr.de",
+      "github": "eilmiv",
+      "name": "Martin Voigt",
+      "orcid": "0000-0001-5556-838X"
+    },
+    "description": "A cross-sectoral metadata profile for describing teaching and learning resources, primarily based on [schema.org](https://schema.org) and the Learning Resource Metadata Initiative LRMI, and additionally utilizing elements of the Simple Knowledge Organization System SKOS. A JSON-LD11-compliant data structure is defined in the form of this HTML specification, including a JSON schema against which data can be automatically checked for conformity with the profile.",
+    "example": "conditionsofaccess",
+    "github_request_issue": 1780,
+    "homepage": "https://dini-ag-kim.github.io/amb/20231019/",
+    "keywords": [
+      "learning material",
+      "learning materials",
+      "open educational resource",
+      "open educational resources",
+      "schema"
+    ],
+    "license": "CC0-1.0",
+    "name": "Allgemeines Metadatenprofil für Bildungsressourcen",
+    "pattern": "^[a-z]\\w+$",
+    "repository": "https://gitub.com/dini-ag-kim/amb",
+    "reviewer": {
+      "email": "cthoyt@gmail.com",
+      "github": "cthoyt",
+      "name": "Charles Tapley Hoyt",
+      "orcid": "0000-0003-4423-4370"
+    },
+    "uri_format": "https://dini-ag-kim.github.io/amb/20231019/#$1"
+  },
+  "kim.conditionsofaccess": {
+    "contributor": {
+      "github": "eilmiv",
+      "name": "Martin Voigt",
+      "orcid": "0000-0001-5556-838X"
+    },
+    "description": "Identifiers describing conditions of access to an object (login) as defined by the [OER metadata group](https://oerworldmap.org/resource/urn:uuid:fd06253e-fe67-4910-b923-51db9d27e59f).",
+    "example": "no_login",
+    "example_decoys": [
+      "nope"
+    ],
+    "example_extras": [
+      "login"
+    ],
+    "github_request_issue": 1782,
+    "homepage": "https://skohub.io/dini-ag-kim/value-lists/heads/main/w3id.org/kim/conditionsOfAccess/index.html",
+    "keywords": [
+      "learning material",
+      "learning materials",
+      "open educational resource",
+      "open educational resources"
+    ],
+    "license": "CC0-1.0",
+    "name": "Conditions of Access",
+    "pattern": "^login|no_login$",
+    "reviewer": {
+      "email": "cthoyt@gmail.com",
+      "github": "cthoyt",
+      "name": "Charles Tapley Hoyt",
+      "orcid": "0000-0003-4423-4370"
+    },
+    "uri_format": "https://skohub.io/dini-ag-kim/value-lists/heads/main/w3id.org/kim/conditionsOfAccess/$1.html"
+  },
   "kim.educationlevel": {
     "contributor": {
       "email": "cthoyt@gmail.com",
@@ -82294,7 +82537,7 @@
   "mmo": {
     "aberowl": {
       "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MMO/115/mmo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MMO/116/mmo.owl",
       "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
       "name": "Measurement method ontology",
       "prefix": "MMO"
@@ -82399,8 +82642,8 @@
       "name": "Measurement method ontology",
       "prefix": "mmo",
       "tracker": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues",
-      "version": "2.164",
-      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.164/mmo.owl"
+      "version": "2.166",
+      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.166/mmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -83188,8 +83431,8 @@
       "name": "Protein modification",
       "prefix": "mod",
       "tracker": "https://github.com/HUPO-PSI/psi-mod-CV/issues",
-      "version": "1.031.6",
-      "version.iri": "http://purl.obolibrary.org/obo/mod/1.031.6/mod.owl"
+      "version": "1.032.4",
+      "version.iri": "http://purl.obolibrary.org/obo/mod/1.032.4/mod.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -83950,8 +84193,8 @@
       "name": "Mondo Disease Ontology",
       "prefix": "mondo",
       "tracker": "https://github.com/monarch-initiative/mondo/issues",
-      "version": "2025-11-04",
-      "version.iri": "http://purl.obolibrary.org/obo/mondo/releases/2025-11-04/mondo-international.owl"
+      "version": "2025-12-02",
+      "version.iri": "http://purl.obolibrary.org/obo/mondo/releases/2025-12-02/mondo-international.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -84379,8 +84622,8 @@
       "name": "The Mammalian Phenotype Ontology",
       "prefix": "mp",
       "tracker": "https://github.com/mgijax/mammalian-phenotype-ontology/issues",
-      "version": "2025-10-23",
-      "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-10-23/mp-international.owl"
+      "version": "2025-11-19",
+      "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-11-19/mp-international.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -111819,7 +112062,7 @@
   "rbo": {
     "aberowl": {
       "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
-      "download_owl": "http://aber-owl.net/media/ontologies/RBO/37/rbo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/RBO/38/rbo.owl",
       "homepage": "https://github.com/Radiobiology-Informatics-Consortium/RBO",
       "name": "Radiation Biology Ontology",
       "prefix": "RBO"
@@ -111886,8 +112129,8 @@
       "name": "Radiation Biology Ontology",
       "prefix": "rbo",
       "tracker": "https://github.com/Radiobiology-Informatics-Consortium/RBO/issues",
-      "version": "2025-09-17",
-      "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-09-17/rbo.owl"
+      "version": "2025-11-26",
+      "version.iri": "http://purl.obolibrary.org/obo/rbo/releases/2025-11-26/rbo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -124517,8 +124760,38 @@
     "biocontext": {
       "prefix": "SPLASH"
     },
+    "fairsharing": {
+      "abbreviation": "SPLASH",
+      "contact": {
+        "email": "ofiehn@ucdavis.edu",
+        "name": "Oliver Fiehn",
+        "orcid": "0000-0002-6261-8928"
+      },
+      "description": "The SPLASH (SPectraL hASH) identifier is a unique and unambiguous database-independent spectral identifier for chemical structures. It contains four separate blocks that define different layers of information, separated by dashes. The first block is the SPLASH identifier, the second and third are spectral summary blocks, and the fourth is the full spectrum hash block. The first block (splash10) encodes the SPLASH identifier, starting with letters for semantic web compatibility, followed by a number representing the measurement type (1 for MS, 2 and above for other data types to be included in the future) and the SPLASH version number, starting at 0, to allow future specification updates. The the second and third blocks are , intensities are summed over fixed (but different) bin sizes and wrapped over ten bins. The second block (0002) is formed using a reduced spectrum (the top ten or fewer ions greater than 10% of the base peak). This reduced spectrum is summed over bins of 5 Da. Each bin is then scaled to a single-digit integral value in base 3 (0–2), and the resulting 10 digit histogram is converted to a base 36 number, resulting in a 4-digit block. In the third block (0900000000) the intensities are summed over 100-Da bin sizes, each bin is then scaled to a single-digit, integral base-10 digit (0–9). The fourth block (full spectrum hash) is represented by a Secure Hash Algorithm SHA256 (numbers and lowercase letters only), calculated in hexadecimal notation and truncated to 20 characters. The full spectrum string of m/z and relative intensity pairs are sorted by ascending m/z and then by descending intensity. The m/z value is multiplied by 10^6, cast to a long (64-bit) integer and joined with the normalized intensity as strings separated by a colon. The resulting ion pairs are then joined, delimited by a single space.",
+      "domains": [
+        "Mass spectrum"
+      ],
+      "homepage": "https://splash.fiehnlab.ucdavis.edu/",
+      "name": "The Spectral Hash Identifier",
+      "prefix": "FAIRsharing.f31b8f",
+      "publications": [
+        {
+          "doi": "10.1038/nbt.3689",
+          "pubmed": "27824832",
+          "title": "SPLASH, a hashed identifier for mass spectra",
+          "year": 2016
+        }
+      ],
+      "repository": "https://github.com/berlinguyinca/spectra-hash",
+      "subjects": [
+        "Lipidomics",
+        "Metabolomics",
+        "Proteomics"
+      ]
+    },
     "mappings": {
       "biocontext": "SPLASH",
+      "fairsharing": "FAIRsharing.f31b8f",
       "miriam": "splash",
       "n2t": "splash"
     },
@@ -134456,7 +134729,7 @@
         "Transcription Factor",
         "binding site"
       ],
-      "homepage": "http://tfclass.bioinf.med.uni-goettingen.de/index.jsf",
+      "homepage": "http://tfclass.bioinf.med.uni-goettingen.de/",
       "name": "Transcription Factor Class",
       "prefix": "FAIRsharing.XykycZ",
       "publications": [
@@ -143184,8 +143457,8 @@
       "name": "Vaccine Ontology",
       "prefix": "vo",
       "tracker": "https://github.com/vaccineontology/VO/issues",
-      "version": "2025-11-01",
-      "version.iri": "http://purl.obolibrary.org/obo/vo/releases/2025-11-01/vo.owl"
+      "version": "2025-12-03",
+      "version.iri": "http://purl.obolibrary.org/obo/vo/releases/2025-12-03/vo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -143606,7 +143879,7 @@
   "vt": {
     "aberowl": {
       "description": "An ontology of traits covering vertebrates",
-      "download_owl": "http://aber-owl.net/media/ontologies/VT/139/vt.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/VT/140/vt.owl",
       "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
       "name": "Vertebrate trait ontology",
       "prefix": "VT"
@@ -143710,8 +143983,8 @@
       "name": "The Vertebrate Trait Ontology",
       "prefix": "vt",
       "tracker": "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues",
-      "version": "2025-11-18",
-      "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-11-18/vt.owl"
+      "version": "2025-12-02",
+      "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-12-02/vt.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -146269,7 +146542,7 @@
   "xco": {
     "aberowl": {
       "description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.",
-      "download_owl": "http://aber-owl.net/media/ontologies/XCO/153/xco.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/XCO/154/xco.owl",
       "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000",
       "name": "Experimental condition ontology",
       "prefix": "XCO"
@@ -146378,8 +146651,8 @@
       "name": "Experimental condition ontology",
       "prefix": "xco",
       "tracker": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues",
-      "version": "4.220",
-      "version.iri": "http://purl.obolibrary.org/obo/xco/4.220/xco.owl"
+      "version": "4.221",
+      "version.iri": "http://purl.obolibrary.org/obo/xco/4.221/xco.owl"
     },
     "ontobee": {
       "library": "Library",