bioregistry 0.13.9__py3-none-any.whl → 0.13.10__py3-none-any.whl

bioregistry/__init__.py

@@ -127,7 +127,7 @@ from .resolve_identifier import (
     standardize_identifier,
 )
 from .resource_manager import Manager, manager
-from .schema.struct import (
+from .schema import (
     Author,
     Collection,
     Context,

bioregistry/analysis/paper_ranking.py

@@ -400,7 +400,7 @@ def predict_and_save(
     :param path: Path to save the predictions.
     """
     x_meta = pd.DataFrame()
-    x_transformed = vectorizer.transform(df["title"] + " " + df["abstract"])
+    x_transformed = vectorizer.transform(_concat(df))
     for name, clf in classifiers:
         x_meta[name] = _predict(clf, x_transformed)
 
@@ -524,7 +524,7 @@ def train(
     df = pd.concat(curated_dfs)[["pubmed", "title", "abstract", "relevant"]]
 
     df["abstract"] = df["abstract"].fillna("")
-    df["title_abstract"] = df["title"] + " " + df["abstract"]
+    df["title_abstract"] = _concat(df)
     df = df[df.title_abstract.notna()]
     df = df.drop_duplicates()
     _echo_stats(df, "combine curated publications")
@@ -582,5 +582,9 @@ def train(
     return TrainingResult(curated_pubmed_ids, vectorizer, classifiers, meta_clf)
 
 
+def _concat(df: pd.DataFrame) -> pd.Series[str]:
+    return cast("pd.Series[str]", df["title"]) + " " + cast("pd.Series[str]", df["abstract"])
+
+
 if __name__ == "__main__":
     main()

bioregistry/app/api.py

@@ -19,8 +19,7 @@ from ..export.rdf_export import (
     resource_to_rdf_str,
 )
 from ..resource_manager import Manager
-from ..schema import Attributable, sanitize_mapping
-from ..schema.struct import Collection, Context, Registry, Resource
+from ..schema import Attributable, Collection, Context, Registry, Resource, sanitize_mapping
 from ..schema_utils import (
     read_collections_contributions,
     read_prefix_contacts,

bioregistry/app/ui.py

@@ -38,9 +38,8 @@ from ..export.rdf_export import (
     metaresource_to_rdf_str,
     resource_to_rdf_str,
 )
-from ..schema import Context
-from ..schema.constants import SCHEMA_TERMS
-from ..schema.struct import (
+from ..schema import (
+    Context,
     Registry,
     RegistryGovernance,
     RegistryQualities,
@@ -49,6 +48,7 @@ from ..schema.struct import (
     get_json_schema,
     schema_status_map,
 )
+from ..schema.constants import SCHEMA_TERMS
 from ..schema_utils import (
     read_collections_contributions,
     read_context_contributions,

bioregistry/bibliometrics.py

@@ -8,7 +8,7 @@ from collections.abc import Iterable
 from typing import TYPE_CHECKING
 
 from .resource_manager import manager
-from .schema.struct import Publication, deduplicate_publications
+from .schema import Publication, deduplicate_publications
 
 if TYPE_CHECKING:
     import pandas

bioregistry/cli.py

@@ -8,7 +8,7 @@ from .app.cli import web
 from .compare import compare
 from .export.cli import export
 from .lint import lint
-from .schema.struct import generate_schema
+from .schema import generate_schema
 from .utils import get_hexdigests, secho
 from .validate.cli import validate
 from .version import VERSION

bioregistry/curation/add_cessda.py

@@ -13,7 +13,7 @@ from tabulate import tabulate
 from tqdm import tqdm
 
 import bioregistry
-from bioregistry.schema.struct import Author, Organization
+from bioregistry.schema import Author, Organization
 
 BASE = "https://vocabularies.cessda.eu"
 MODULE = pystow.module("cessda")

bioregistry/curation/add_provider_status_curations.py

@@ -8,7 +8,7 @@ import pandas as pd
 from tqdm import tqdm
 
 from bioregistry import manager
-from bioregistry.schema.struct import StatusCheck
+from bioregistry.schema import StatusCheck
 
 URL = "https://docs.google.com/spreadsheets/d/e/2PACX-1vSC8RAMlNGauLHJb1RGwFuvC2LBJBjeeICRtq596npE6G4ZjZwX8W_Fz031hAfqsbu6f9Ruxl2PTsFx/pub?gid=1207894592&single=true&output=tsv"
 

bioregistry/curation/clean_publications.py

@@ -7,7 +7,7 @@
 import click
 
 import bioregistry
-from bioregistry.schema.struct import deduplicate_publications
+from bioregistry.schema import deduplicate_publications
 
 
 @click.command()

bioregistry/curation/enrich_publications.py

@@ -13,7 +13,7 @@ from manubot.cite.pubmed import get_pmid_for_doi, get_pubmed_csl_item
 from tqdm import tqdm
 
 from bioregistry import manager
-from bioregistry.schema.struct import Publication, deduplicate_publications
+from bioregistry.schema import Publication, deduplicate_publications
 from bioregistry.utils import removeprefix
 
 

bioregistry/data/bioregistry.json

@@ -10915,15 +10915,38 @@
       "orcid": "0000-0003-4423-4370"
     },
     "description": "Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]",
+    "download_rdf": "https://bioschemas.org/types/bioschemas_types.ttl",
     "example": "Dataset",
     "homepage": "https://bioschemas.org",
     "mappings": {
       "biolink": "bioschemas"
     },
     "name": "BioSchemas",
+    "providers": [
+      {
+        "code": "draft",
+        "description": "BioSchemas makes a difference between its draft and released terms by putting them in different namespaces. This causes problems when consuming it, so this URI format maps them all into a unified semantic space",
+        "homepage": "https://bioschemas.org",
+        "name": "BioSchemas Draft",
+        "uri_format": "https://bioschemas.org/draft_terms/$1"
+      },
+      {
+        "code": "w3id",
+        "uri_format": "https://w3id.org/bioschemas/terms/$1"
+      },
+      {
+        "code": "term",
+        "uri_format": "https://bioschemas.org/terms/$1"
+      },
+      {
+        "code": "biothings",
+        "uri_format": "https://discovery.biothings.io/view/bioschemastypes/$1"
+      }
+    ],
     "repository": "https://github.com/BioSchemas/specifications",
     "synonyms": [
-      "bioschema"
+      "bioschema",
+      "bioschemas_draft"
     ],
     "twitter": "bioschemas",
     "uri_format": "https://bioschemas.org/profiles/$1"
@@ -18388,6 +18411,8 @@
       "name": "Charles Tapley Hoyt",
       "orcid": "0000-0003-4423-4370"
     },
+    "description": "A data model for managing information about chemical entities, ranging from atoms through molecules to complex mixtures.",
+    "download_owl": "https://raw.githubusercontent.com/chemkg/chemrof/main/schema/owl/chemrof.owl.ttl",
     "example": "FullySpecifiedAtom",
     "homepage": "https://chemkg.github.io/chemrof/",
     "mappings": {
@@ -39764,6 +39789,31 @@
     "homepage": "https://www.ema.europa.eu/en/medicines",
     "name": "European Medicines Evaluation Agency"
   },
+  "emg": {
+    "contact": {
+      "email": "oonagh.mannix@helmholtz-berlin.de",
+      "name": "Oonagh Brendike-Mannix",
+      "orcid": "0000-0003-0575-2853"
+    },
+    "contributor": {
+      "email": "cthoyt@gmail.com",
+      "github": "cthoyt",
+      "name": "Charles Tapley Hoyt",
+      "orcid": "0000-0003-4423-4370"
+    },
+    "description": "The Electron Microscopy (EM) Glossary is a widespread community effort to harmonize terminology in the electron and ion microscopies. It is created in a not-for profit collaboration between academic and non-university research institutions including domain and metadata experts. It provides harmonized terminology for application level semantic artifacts to source from and align with. [from homepage]",
+    "download_owl": "https://owl.emglossary.helmholtz-metadaten.de/ontology.owl",
+    "download_rdf": "https://owl.emglossary.helmholtz-metadaten.de/ontology.ttl",
+    "example": "00000005",
+    "homepage": "https://purls.helmholtz-metadaten.de/emg",
+    "license": "CC-BY-4.0",
+    "logo": "https://codebase.helmholtz.cloud/em_glossary/em_glossary/-/raw/main/EMGlossary.png",
+    "name": "Electron Microscopy Glossary",
+    "pattern": "^\\d{8}$",
+    "rdf_uri_format": "https://purls.helmholtz-metadaten.de/emg/EMG_$1",
+    "repository": "https://codebase.helmholtz.cloud/em_glossary/em_glossary",
+    "uri_format": "https://purls.helmholtz-metadaten.de/emg/EMG_$1"
+  },
   "emi": {
     "contact": {
       "email": "Tarcisio.Mendes@sib.swiss",

bioregistry/data/collections.json

@@ -1196,6 +1196,22 @@
         "nfdi4culture.cto",
         "premis"
       ]
+    },
+    {
+      "authors": [
+        {
+          "email": "cthoyt@gmail.com",
+          "github": "cthoyt",
+          "name": "Charles Tapley Hoyt",
+          "orcid": "0000-0003-4423-4370"
+        }
+      ],
+      "description": "Prefixes for ontologies relevant for DAPHNE4NFDI.",
+      "identifier": "0000026",
+      "name": "DAPHNE4NFDI Ontologies",
+      "resources": [
+        "emg"
+      ]
     }
   ]
 }

bioregistry/export/rdf_export.py

@@ -32,6 +32,7 @@ from ..constants import (
     SCHEMA_TURTLE_PATH,
 )
 from ..resource_manager import Manager, manager
+from ..schema import Collection, Registry, Resource
 from ..schema.constants import (
     ROR,
     WIKIDATA,
@@ -42,7 +43,6 @@ from ..schema.constants import (
     bioregistry_schema,
     get_schema_rdf,
 )
-from ..schema.struct import Collection, Registry, Resource
 
 logger = logging.getLogger(__name__)
 

bioregistry/export/tables_export.py

@@ -14,7 +14,7 @@ from ..constants import (
     TABLES_SUMMARY_LATEX_PATH,
 )
 from ..resolve import count_mappings
-from ..schema.struct import Registry
+from ..schema import Registry
 from ..schema_utils import read_metaregistry
 from ..summary import BioregistrySummary
 

bioregistry/record_accumulator.py

@@ -12,7 +12,7 @@ import curies
 from curies import Converter, Record
 from curies.w3c import NCNAME_RE
 
-from .schema.struct import Resource
+from .schema import Resource
 
 __all__ = [
     "get_converter",

bioregistry/resolve.py

@@ -11,8 +11,7 @@ from typing import Any, Literal, overload
 import curies
 
 from .resource_manager import MetaresourceAnnotatedValue, manager
-from .schema import Attributable, Resource
-from .schema.struct import AnnotatedURL, Collection
+from .schema import AnnotatedURL, Attributable, Collection, Resource
 
 __all__ = [
     "add_resource",

bioregistry/resource_manager.py

@@ -44,11 +44,11 @@ from .schema import (
     Attributable,
     Collection,
     Context,
+    MetaprefixAnnotatedValue,
     Registry,
     Resource,
     sanitize_model,
 )
-from .schema.struct import MetaprefixAnnotatedValue
 from .schema_utils import (
     _collections_from_path,
     _contexts_from_path,

bioregistry/schema/__init__.py

@@ -1,26 +1,50 @@
 """Data structures."""
 
 from .struct import (
+    AnnotatedURL,
     Attributable,
     Author,
     Collection,
     Context,
+    MetaprefixAnnotatedValue,
+    Organization,
+    Provider,
     Publication,
+    RDFFormat,
     Registry,
+    RegistryGovernance,
+    RegistryQualities,
+    RegistrySchema,
     Resource,
+    StatusCheck,
+    deduplicate_publications,
+    generate_schema,
     get_json_schema,
+    schema_status_map,
 )
 from .utils import sanitize_mapping, sanitize_model
 
 __all__ = [
+    "AnnotatedURL",
     "Attributable",
     "Author",
     "Collection",
     "Context",
+    "MetaprefixAnnotatedValue",
+    "Organization",
+    "Provider",
     "Publication",
+    "RDFFormat",
     "Registry",
+    "RegistryGovernance",
+    "RegistryQualities",
+    "RegistrySchema",
     "Resource",
+    "StatusCheck",
+    "deduplicate_publications",
+    "generate_schema",
     "get_json_schema",
     "sanitize_mapping",
     "sanitize_model",
+    "schema_status_map",
 ]

bioregistry/schema/struct.py

@@ -56,9 +56,12 @@ __all__ = [
     "Organization",
     "Provider",
     "Publication",
+    "RDFFormat",
     "Registry",
     "Resource",
     "ResourceStatus",
+    "StatusCheck",
+    "deduplicate_publications",
     "get_json_schema",
 ]
 

bioregistry/version.py

@@ -11,7 +11,7 @@ __all__ = [
     "get_version",
 ]
 
-VERSION = "0.13.9"
+VERSION = "0.13.10"
 
 
 def get_git_hash() -> str | None:

{bioregistry-0.13.9.dist-info → bioregistry-0.13.10.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: bioregistry
-Version: 0.13.9
+Version: 0.13.10
 Summary: Integrated registry of biological databases and nomenclatures
 Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
 Author: Charles Tapley Hoyt

{bioregistry-0.13.9.dist-info → bioregistry-0.13.10.dist-info}/RECORD

@@ -1,11 +1,13 @@
-bioregistry/__init__.py,sha256=H_NXlpw8NaiZq1yUAFMdB4BMrgS3ht--9efzB7GW6sc,6749
+bioregistry/.DS_Store,sha256=MtEQz-j0qLB8mBzZ2s0qvjaV6xHF3Z2A1YUEa_dogB8,10244
+bioregistry/__init__.py,sha256=ghFOK7i2zfm5vEwVF-xXuivIMD7giyImmmbhHlMfEQo,6742
 bioregistry/__main__.py,sha256=hfyt3xyxKdAp969VpjqhTMdpG7CxtDCA7y8bYc0-ZKU,92
 bioregistry/analysis/__init__.py,sha256=z0F0QjavayAY0-otbu92g1wR3KK5ZmRNS24r76nxVJI,41
 bioregistry/analysis/bioregistry_diff.py,sha256=0GEjk3OgjToUKO0nH4RmFUpZl8L2rikSy0qDDtqB2o4,10278
 bioregistry/analysis/mapping_checking.py,sha256=QM5r2p67httXGd-LcinjwCyVmL4_d9pYSu98RrspsE8,8009
-bioregistry/analysis/paper_ranking.py,sha256=2mP-uPhpUH027panlVbgaWhUpD_Mih9CB0z2Dc2N_3c,19612
+bioregistry/analysis/paper_ranking.py,sha256=YUupzOKpOpMLmRqXKgEPDe72zoIRYVu5Fmn5qqbgXgY,19711
+bioregistry/app/.DS_Store,sha256=NK1e45m6DjaPTOTxN8yC9uUYgE9W2jH55YNfoEQLPVM,6148
 bioregistry/app/__init__.py,sha256=Y2NMn6HNPdg398xdizYaS2tjSk4JX_luU1qehve5jXk,23
-bioregistry/app/api.py,sha256=P6-4vhA34IaCvs7VlTPQOhL_yK0HLOk7weug9jKP4jo,19107
+bioregistry/app/api.py,sha256=1ad-szASI6C7dxpqZfPGEZdf2HEJ6gk470xwyljiPrw,19080
 bioregistry/app/cli.py,sha256=Zu3Kqf8TGONpxuWSfjLBSz-ohJVju1gugo5SZGjNhFQ,2306
 bioregistry/app/constants.py,sha256=zu6C-hrYAi7XOY-REAp1KjwNjer7CcTJlsZ0ov2w5Q8,2015
 bioregistry/app/impl.py,sha256=cNdQYoHcDs3VLUnIlilNE1KSLUnJ-em2ftaDCvLr8X0,20941
@@ -18,6 +20,7 @@ bioregistry/app/static/logo.svg,sha256=ppQehHfqK9Twey3FnVJm3nrKys5xZmfcvbnMOYNrj
 bioregistry/app/static/nfdi4chem.svg,sha256=jjHtKDadcnfgkfU_NGpuXb8E4oH8stbyWftZci6bm9s,5063
 bioregistry/app/static/northeastern.svg,sha256=1TOrV0kNHLM9iEMhXjZBt1WYwmSRHmyJ5wSkNpfckdE,7086
 bioregistry/app/static/rwth-iac.svg,sha256=UpvCVjb9wflykVH-8r1QkpI5zEz-ID72nnobFQv6nP4,19228
+bioregistry/app/templates/.DS_Store,sha256=-h9BoY3FbmzzXlHeJRERn_I7ipCKSoYZbNch6jKcGHM,6148
 bioregistry/app/templates/base.html,sha256=BQxzPOOzuTu3Z-y4pio5nZGZNExpoUxqxJgmwQfW4Jc,10799
 bioregistry/app/templates/collection.html,sha256=Tgd4lkCNl2Bguw5wgq1yMj1kwv81V3fpwH_lsSx74GU,3761
 bioregistry/app/templates/collections.html,sha256=3G7qtao8nPlbMJN2i9DjwGvTqLi0Rbvl9_Vl7W48RPc,3474
@@ -50,7 +53,7 @@ bioregistry/app/templates/resolve_errors/missing_providers.html,sha256=9xFAcxM7o
 bioregistry/app/templates/resource.html,sha256=5heriFhs2yaLAehxsYaRBmHA5Q6KUkzQSHr5DqhX1sI,41303
 bioregistry/app/templates/resources.html,sha256=HJdvJtF2FrkEVyfGLKD_5G0wlqDXEJrxzdJwObzLxTA,3930
 bioregistry/app/test.py,sha256=mr0erF32i45CWbkdoJeb907FTKoYiJsjUIe-XA_G2qI,2057
-bioregistry/app/ui.py,sha256=cq3rLNJ0AGFnmTgUSaIzOGaB1-BIPqeBBcX915d2i4k,23957
+bioregistry/app/ui.py,sha256=Fh2Aq2q6ZJRQhLlbgnZ7xTzqMQFGxXKIqpb2Tu_0uzo,23934
 bioregistry/app/utils.py,sha256=pw2rQq8RnkDwv11BA1xRKyVlxNfMBlwVhoiCIKAJ0nY,8245
 bioregistry/app/wsgi.py,sha256=yUHziJFE9iixZEZgu02xqGa4ZEEy8xEU5O0XkNvdA8o,256
 bioregistry/benchmarks/__init__.py,sha256=M-bvh_Cz0MbpoIqAzEvL38fHIYvZzJO1OgSBNMaZDBI,38
@@ -59,28 +62,29 @@ bioregistry/benchmarks/cli.py,sha256=6sdEKdZ9yea_5n9dtUDvhOfCDR1bTOrFKLCsKMOWGeE
 bioregistry/benchmarks/curie_parsing.py,sha256=cmEbpQdhciwqPwMtPBSijOgJbk6Olj4ljaMNqwzAfSo,3300
 bioregistry/benchmarks/curie_validation.py,sha256=MlJbVxRRzYX39Z1JuzT_ElI7ZUH0cn0kjpk_61eU1qY,4539
 bioregistry/benchmarks/uri_parsing.py,sha256=mRu0kf8uWH2yQT04ZRgqYpeMx-gyfD2pyehPwHaGKqg,2612
-bioregistry/bibliometrics.py,sha256=raFJyycSG4QNcMkeF7F3Mh2clba0lQFo_PZ4neRa0Nk,2171
-bioregistry/cli.py,sha256=6CB4weLBiqM5130mdOc6xY4dzJka6F1n_BpZy6uEAnU,3375
+bioregistry/bibliometrics.py,sha256=NlwUz78KpoMzTBR_MNrdOXunQt8jEnDWgJx3FtaawBs,2164
+bioregistry/cli.py,sha256=viLC4itr1_zI9cZ93NqHJhjhwH0_rJ9B1ldnd8ogw-E,3368
 bioregistry/collection_api.py,sha256=ayuFB4A5_ZeCPeQYLogsCMEndonDcKOxUN-YzQ_C3dM,2378
 bioregistry/compare.py,sha256=zumg66bgfrYr5-WabdIGJlYbaTbsR2nyInwlTG8IXqY,25069
 bioregistry/constants.py,sha256=_E6YOFl7LtdbFllhapD0qfWTHUVUVNvXAtArpQX1o34,11919
+bioregistry/curation/.DS_Store,sha256=en3II7c-35LCfjtDGo7ecJ2jBvMxoW0ne70gH0sxTEw,6148
 bioregistry/curation/__init__.py,sha256=X_Qod6ZnK31NYxKw_hwOXc35TI3HBZQzkp1URkmQU-I,22
-bioregistry/curation/add_cessda.py,sha256=s5E1Qwr-IReFxQpJ7XAWrAnqNTAC7qCSnBqrYvMVCvs,4211
+bioregistry/curation/add_cessda.py,sha256=Jx2H_jY9E3ZRBG78kHoY9DhcN1P7-qBr_iWV_y3HUMg,4204
 bioregistry/curation/add_co_providers.py,sha256=s14caK1lCRLBEW_NsbgIV93eqoBpr56kD1Ted5_KD8Y,1216
 bioregistry/curation/add_descriptions_from_gs.py,sha256=v5qomc7NSdPiSHOJZAsf7Jsc7Ia7Pcz7xu0e7Ejso6M,1055
 bioregistry/curation/add_examples.py,sha256=3S2F4BrbJebWG32AvnBG4rb0rzTC2mBuZzVucx58YcA,1295
 bioregistry/curation/add_examples_from_ols.py,sha256=g09hNkni-4jR_hzaJ-IYN8J8TV2Jk91htwXPDwi85As,2961
 bioregistry/curation/add_ontology_regexes.py,sha256=QdsMrma7meYPK_xCLj8U13XPM6ayWPG_LyL3WiAe7y4,1624
-bioregistry/curation/add_provider_status_curations.py,sha256=Jeh5xmx9Ix8L8SabTP6jYA8zPXHzfKlg-QVYUH5TbZ8,1963
+bioregistry/curation/add_provider_status_curations.py,sha256=_ydRS1AT4z06z1Ur9If7eyuSmWRoCMZQGM9t2dpofdI,1956
 bioregistry/curation/add_sweet.py,sha256=ooVbCzzoicj1Q0xsYCYF4CSt4GKLQUCMSy-lfiCue2E,5060
 bioregistry/curation/add_wikidata_database.py,sha256=TBzaBmTreXcxZII2ihSAu2iK5leSaiZ36k9e-In7J-4,1394
 bioregistry/curation/bulk_import.py,sha256=RwWPxtlV9HpIIdIu4JjKB_DgtP200sLQ5xzwNAiCcFg,2710
 bioregistry/curation/clean_licenses.py,sha256=01fy-DlpmkbyYV-F2V-2ofZ97D0nSFpJx4SCo0PcL5g,627
 bioregistry/curation/clean_name_suffixes.py,sha256=ItqqXYJKHymNy2-T37wwvFSSaWM7uuMeF2Im3CWZ0oI,729
-bioregistry/curation/clean_publications.py,sha256=4CDU8NF8l0Z3h_Be5vVjLWR1mF53UO78K6xmWKdtcUw,723
+bioregistry/curation/clean_publications.py,sha256=u3JOvo6ZQ2A8aY4ikGOOdxHLYeMjCGhA1SQ7yjfjdeY,716
 bioregistry/curation/cleanup_authors.py,sha256=oVJgh6hONRQ1hqqXi2IeyIZsfYUyILdQH3tuNGdp9uM,2568
 bioregistry/curation/deprecation_diff.py,sha256=L3W8MX3IT3WG_S0t3hpdSKFaMXcN3EbjcIB9GWVcKpc,1555
-bioregistry/curation/enrich_publications.py,sha256=q0Rrz1kKgXduUPmHyzyXSqTW4SaK40semexbrpS1LKg,5296
+bioregistry/curation/enrich_publications.py,sha256=W7VL-TO3xC6K13pJIWp2He3KjD7Pc3vUox_6jonEyv0,5289
 bioregistry/curation/find_contact_groups.py,sha256=pktZ3B6Nn8GtutGs5WnFf7ykcIYR9KLcVMEVYdLAwdM,1122
 bioregistry/curation/fix_obo_purls.py,sha256=5mOn7KKOJvR9qNlMHIF17lzIrB8d7PIZLoBaA_1xKf0,581
 bioregistry/curation/import_pc_semiautomatic.py,sha256=enXSH29bLFdoVHpRNJaPbuXuSeX_JY-z8z2EFW07fFA,3555
@@ -99,8 +103,8 @@ bioregistry/curation/suggest_author_curation.py,sha256=ecD9v6yOx5LbTAi0_wNhk9fKO
 bioregistry/curation/suggest_uniprot_providers.py,sha256=b9_LZ9hjavJ0iigGThZJuH_wEjVWCu3njJWdwvBSXj4,835
 bioregistry/data/README.md,sha256=vlWWGV0jOmcm4wu1hGUq01jZa41rDwfqIDffVs2somg,1796
 bioregistry/data/__init__.py,sha256=6oMVGRsmEoVd5caRr1Q_Zk-u3rOj382rIi2AoGMEVc8,41
-bioregistry/data/bioregistry.json,sha256=DNy1S2Mu0CY-krx4k2JGT25S4Xgn-J2zjhAOYeUVoCc,6377971
-bioregistry/data/collections.json,sha256=RQ1-vIvqTANNDzCtLAjSP54snCz35o2c8dH8RC2BLPY,32233
+bioregistry/data/bioregistry.json,sha256=0ZWnbXyIhlakf8peL-H4XN1PbjIbrDhYZiU_LfvwZWg,6380512
+bioregistry/data/collections.json,sha256=A5lqwOekyQwfT2SK81GoxCk0XS5s-cDb_qw7M43JfrA,32633
 bioregistry/data/contexts.json,sha256=nUHDGrZe2oF9P5I8CeMoEYsaUfwNweTc5n7t8Hj2iJw,1436
 bioregistry/data/curated_mappings.sssom.tsv,sha256=n5l_fOSDmzV23gUQhgnefdqqJGyLwyH7YE9FGGIn3Gc,45034
 bioregistry/data/curated_papers.tsv,sha256=XdqIGcP1s2xbIn9851M_3wjOnNbIqTlvGeJqbg2rlVo,27397
@@ -110,13 +114,14 @@ bioregistry/export/__main__.py,sha256=u9XDrUWAC952AzgUNHlfFPhDl0tBPVv_PChPRxKJhO
 bioregistry/export/cli.py,sha256=zWgNydlZUyfpjC4AksmT_npD20OBUA28CwSK4s63_C0,744
 bioregistry/export/prefix_maps.py,sha256=ZUfv91MniUWI32rFph79fdKoKp1m-NflHvYM1uZgGq4,2486
 bioregistry/export/prefixcc.py,sha256=s0SrrSytHSXgENvEQ05_nWDY37GwZLzsPruAYMxUXMU,1839
-bioregistry/export/rdf_export.py,sha256=dhiyGnceiS-qJ_HVK9prdFmVGgee3xVRlfB5tM70ORM,9148
+bioregistry/export/rdf_export.py,sha256=mMcG-IpxTFp-ZnLXvpPQQGn2zhglFDgub1rQKG16EGs,9141
 bioregistry/export/schema_export.py,sha256=JkpbTvgJ94CrLxtPNgToMZ16FbmoTrC3E33-eHq8jnY,494
 bioregistry/export/sssom_export.py,sha256=1xImgzpeQNAGWBXr6WQ-iBmBr0aNjB73lF-Tv_wsTRE,3302
-bioregistry/export/tables_export.py,sha256=_ZS5_xFQJ8CWr_YbtkuzA36EpX6AH2qjxmMT11U5isw,8890
+bioregistry/export/tables_export.py,sha256=IVzRc2US3CDRo13upYBfy3lN8btMyyP5MFVhEZ7XN4o,8883
 bioregistry/export/tsv_export.py,sha256=apkwHiZbehekbfwxe4a4fIvD-6guh0GM8JE7Qf_7_l8,4164
 bioregistry/export/warnings_export.py,sha256=LH3YsTzlJfi_KYEEvU0HzGScp0EuR0pei7pi6IjX6J4,4901
 bioregistry/export/yaml_export.py,sha256=08W93quZWirWv5TltvgltKxWbF1nMlzrlWsVocc7T8k,1308
+bioregistry/external/.DS_Store,sha256=Z9kAJuxxll_hDHDy-OWxUT4EEDpbh4KAuaMfi5CYz7s,14340
 bioregistry/external/__init__.py,sha256=cjcfwBprqBx_X8IJh6Vug6gGgbCf5vLcJAe4Ql_0Cuc,2989
 bioregistry/external/aberowl/__init__.py,sha256=5xOVxU7SMXlTvI0zWi6cMbiga1jVXD0Joh-N_rBH1As,2475
 bioregistry/external/aberowl/processed.json,sha256=7dk3dP6s23SAT6rzYOzdkdWzHjsHkYRQ9yyxcU5dg3k,746926
@@ -155,6 +160,7 @@ bioregistry/external/integbio/__init__.py,sha256=Bpsf4-rgPixVa-_YW0IGYuLVkQ9xRpY
 bioregistry/external/integbio/processed.json,sha256=CjDlI067QJp7thh95fXHvWcSRdSD6xLbgwNgexkt5wQ,1796147
 bioregistry/external/lov/__init__.py,sha256=18vZoxRhvX6UqQLAHmyHEMrIB_8Xe4KSGXSNd_PdCw0,2655
 bioregistry/external/lov/processed.json,sha256=e7LWe7xhaiBOMz9lCdAbsYAVWotheNmB5NPhaspJRC8,479432
+bioregistry/external/miriam/.DS_Store,sha256=UgtGnk8l1Yy0lhP02coFpdu_O1ethJwPURlpZRTp0LY,6148
 bioregistry/external/miriam/__init__.py,sha256=SJMcH2Nh00tT0uCfl4yYCgsi3XC1OD6w1JnAZnEzzJ0,4768
 bioregistry/external/miriam/processed.json,sha256=0IUtSsNECP-4GVbz6Ol3QIFUbsn-m-fZWvjqnV2P10M,596526
 bioregistry/external/n2t/__init__.py,sha256=hQhp_yhOMvXANuuwSDniTysHkwnx61LpTca-E5b9aMY,2954
@@ -200,15 +206,16 @@ bioregistry/pandas.py,sha256=0F5FMgMmwuV1PMWEyl5A4liLwtrPcEyZSj5W1gFal1I,19558
 bioregistry/parse_iri.py,sha256=utlolaC68ilx2rs-FSBIkcuF8rUV76sOB7IHL_fXsqg,12897
 bioregistry/parse_version_iri.py,sha256=ELmpALOa4Nvk8twkbkosZYV3bhpES0Zty1IsFpuvOJY,2499
 bioregistry/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-bioregistry/record_accumulator.py,sha256=U5NiwdlfuJ4VbpBjq_32dA3XuDSQg3gE7fo7doL39mg,20565
+bioregistry/record_accumulator.py,sha256=gbRPS7eWf3daZyuEVCxC-zUqDPz7eX0noqJpoAy7RWw,20558
 bioregistry/reference.py,sha256=7r13osgKqjeTzHu84MPuNRbxWYmZ89eBgdaPHHxpL2o,9020
-bioregistry/resolve.py,sha256=73rMeadqicCXxKX09ovF8BM6r2O4U7cVOy04haENCbY,31979
+bioregistry/resolve.py,sha256=j1Z65pN2NvNsPX5ywhbio_kefUoqTT6MSsnoa-H7nWI,31953
 bioregistry/resolve_identifier.py,sha256=YsMIcog9uXQt6IirqJ34yKmv-3kY97yNoi-IK3Ft7tw,17000
-bioregistry/resource_manager.py,sha256=UYvUMmYK1GLcbJRSbOtSyGq20f24K1g8rTeilYR7KxE,82603
-bioregistry/schema/__init__.py,sha256=5sug6y2IhhDy9fMgoiseLnJwuj1682NRftSEbOToHVo,427
+bioregistry/resource_manager.py,sha256=fK4NU3-3q4gnm6tDLBsZmaqlIPSzBUB209k68NX0E3Y,82581
+bioregistry/schema/.DS_Store,sha256=ZtEuRder-nSDznMn7EklKQngSW-_kJxHtcU0KF_qRbc,6148
+bioregistry/schema/__init__.py,sha256=P_YbooDhrvtLt1L-6DrGbB0y2vsk_FxUXCbUIQNCZEo,957
 bioregistry/schema/constants.py,sha256=R_UgSWWjlm1T9DdbG3VQXt1Pq4HNucHPV5sXJNQSlso,13619
 bioregistry/schema/schema.json,sha256=tC5D0nZ5sLNwJo5pWn3CKjgtqB9lF_UZ6ssEVzzJQhE,70691
-bioregistry/schema/struct.py,sha256=fVKYKcYYgMeE7fDebEZXjwpYjFus20b7X4e_OUS8BsA,128737
+bioregistry/schema/struct.py,sha256=FOo7PtuoeW3UFbqWM8eQsz7DUmvTctgieRdZaESfOlM,128805
 bioregistry/schema/utils.py,sha256=CBFOP0sz_XYWRKNJooElgrF6IVl-q4Dhsc8ynUT6ibE,994
 bioregistry/schema_utils.py,sha256=ut_l8Vz3kcLgLWJStN17-lLMfvY0bmxtFrEopSaOG_U,12568
 bioregistry/summary.py,sha256=hxGeDedxqQ4MVT_svs-PHI_ICAeRCEN8nS1IoF-CXFE,10449
@@ -218,8 +225,8 @@ bioregistry/utils.py,sha256=UtoHc3XzaUxv5aayJkcGyE5qjYP36SjvnVGt9sG2X-U,9207
 bioregistry/validate/__init__.py,sha256=ffUYuZYBcPGl1Ggw65DB9NZO4ma1tlsflRJRpKE4JWw,28
 bioregistry/validate/cli.py,sha256=tiP1vLYzyHdpKZd-YEUQjk3OAIwjwHzTtyiIkmKGt2I,3226
 bioregistry/validate/utils.py,sha256=KEGu6AReWc8LH3SDPjjNH5BA8YiTpGYjYRItOjoCc58,9578
-bioregistry/version.py,sha256=0mgtWt-hR1fRFu8dW00f8q-OGdUkJmMMuY3FYNHmFpc,1017
-bioregistry-0.13.9.dist-info/WHEEL,sha256=3id4o64OvRm9dUknh3mMJNcfoTRK08ua5cU6DFyVy-4,79
-bioregistry-0.13.9.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
-bioregistry-0.13.9.dist-info/METADATA,sha256=9i3JveIoJla6lRx40A2X7rz29-H3v_FLYw5l9NIkANs,36839
-bioregistry-0.13.9.dist-info/RECORD,,
+bioregistry/version.py,sha256=9qZ7LKRMCbunSz9GWXsal63o0sBSXJWi3nlQApCZo3A,1018
+bioregistry-0.13.10.dist-info/WHEEL,sha256=ZHijuPszqKbNczrBXkSuoxdxocbxgFghqnequ9ZQlVk,79
+bioregistry-0.13.10.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
+bioregistry-0.13.10.dist-info/METADATA,sha256=-tCTYbSkkoC85y7F5Y7tHswbo0gw13ePx73nBmn_BdM,36840
+bioregistry-0.13.10.dist-info/RECORD,,

{bioregistry-0.13.9.dist-info → bioregistry-0.13.10.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: uv 0.9.13
+Generator: uv 0.9.10
 Root-Is-Purelib: true
 Tag: py3-none-any