bioregistry 0.13.8__py3-none-any.whl → 0.13.10__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bioregistry/.DS_Store +0 -0
- bioregistry/__init__.py +1 -1
- bioregistry/analysis/paper_ranking.py +6 -2
- bioregistry/app/.DS_Store +0 -0
- bioregistry/app/api.py +1 -2
- bioregistry/app/templates/.DS_Store +0 -0
- bioregistry/app/ui.py +3 -3
- bioregistry/bibliometrics.py +1 -1
- bioregistry/cli.py +1 -1
- bioregistry/curation/.DS_Store +0 -0
- bioregistry/curation/add_cessda.py +1 -1
- bioregistry/curation/add_provider_status_curations.py +1 -1
- bioregistry/curation/add_sweet.py +146 -0
- bioregistry/curation/clean_publications.py +1 -1
- bioregistry/curation/enrich_publications.py +1 -1
- bioregistry/data/bioregistry.json +6849 -619
- bioregistry/data/collections.json +24 -1
- bioregistry/data/curated_papers.tsv +9 -0
- bioregistry/data/metaregistry.json +1 -1
- bioregistry/export/rdf_export.py +1 -1
- bioregistry/export/tables_export.py +1 -1
- bioregistry/external/.DS_Store +0 -0
- bioregistry/external/aberowl/processed.json +23 -19
- bioregistry/external/bartoc/processed.json +5 -5
- bioregistry/external/biolink/processed.json +3 -0
- bioregistry/external/bioportal/agroportal.json +3 -3
- bioregistry/external/bioportal/bioportal.json +45 -17
- bioregistry/external/cellosaurus/processed.json +3 -3
- bioregistry/external/fairsharing/processed.json +6 -5
- bioregistry/external/integbio/processed.json +56 -55
- bioregistry/external/lov/processed.json +59 -0
- bioregistry/external/miriam/.DS_Store +0 -0
- bioregistry/external/obofoundry/processed.json +4 -4
- bioregistry/external/ols/__init__.py +13 -5
- bioregistry/external/ols/processed.json +6 -6
- bioregistry/external/ols/tib-processed.json +0 -1
- bioregistry/external/ols/tib.py +1 -0
- bioregistry/external/re3data/processed.json +24 -2
- bioregistry/record_accumulator.py +1 -1
- bioregistry/resolve.py +1 -2
- bioregistry/resource_manager.py +1 -1
- bioregistry/schema/.DS_Store +0 -0
- bioregistry/schema/__init__.py +24 -0
- bioregistry/schema/struct.py +10 -3
- bioregistry/version.py +1 -1
- {bioregistry-0.13.8.dist-info → bioregistry-0.13.10.dist-info}/METADATA +1 -1
- {bioregistry-0.13.8.dist-info → bioregistry-0.13.10.dist-info}/RECORD +49 -41
- {bioregistry-0.13.8.dist-info → bioregistry-0.13.10.dist-info}/WHEEL +1 -1
- {bioregistry-0.13.8.dist-info → bioregistry-0.13.10.dist-info}/entry_points.txt +0 -0
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@@ -16,7 +16,7 @@ from typing import Any, ClassVar, TypeAlias
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import requests
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from pydantic import BaseModel
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from bioregistry.constants import RAW_DIRECTORY
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from bioregistry.constants import RAW_DIRECTORY, URI_FORMAT_KEY
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from bioregistry.external.alignment_utils import Aligner, load_processed
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from bioregistry.parse_version_iri import parse_obo_version_iri
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from bioregistry.utils import OLSBrokenError
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@@ -74,6 +74,7 @@ def get_ols_base(
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processed_path: Path,
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raw_path: Path,
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version_processing_config_path: Path | None = None,
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skip_uri_format: set[str] | None = None,
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) -> OlsRv:
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"""Get an OLS registry."""
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if processed_path.exists() and not force_download:
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@@ -105,7 +106,11 @@ def get_ols_base(
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version_processing_config = version_processing_configurations.get(ols_id)
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if version_processing_config is None:
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logger.warning("[%s] need to curate processing file", ols_id)
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record = _process(
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record = _process(
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ontology,
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version_processing_config=version_processing_config,
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skip_uri_format=skip_uri_format,
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)
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if not record:
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continue
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processed[ols_id] = record
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@@ -243,7 +248,10 @@ def _get_version(
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def _process(
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ols_entry: Mapping[str, Any],
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ols_entry: Mapping[str, Any],
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*,
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version_processing_config: OLSConfig | None = None,
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skip_uri_format: set[str] | None = None,
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) -> dict[str, str] | None:
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ols_id = ols_entry["ontologyId"]
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config = ols_entry["config"]
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# on tracker / homepage
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base_uris = config.get("baseUris", [])
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if base_uris:
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rv[
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if base_uris and (not skip_uri_format or ols_id not in skip_uri_format):
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rv[URI_FORMAT_KEY] = base_uris[0] + "$1"
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download = _clean_url(config["fileLocation"])
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if download is None:
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"name": "The Drug Ontology",
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"prefix": "dron",
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"tracker": "https://github.com/ufbmi/dron/issues",
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"version": "2025-
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"version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-
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"version": "2025-11-20",
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"version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-11-20/dron.owl"
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},
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"duo": {
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"description": "DUO is an ontology which represent data use conditions.",
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"name": "Mass spectrometry ontology",
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"prefix": "ms",
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"tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
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"version": "4.1.
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"version.iri": "http://purl.obolibrary.org/obo/ms/4.1.
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"version": "4.1.216",
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"version.iri": "http://purl.obolibrary.org/obo/ms/4.1.216/ms.owl"
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},
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"msio": {
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"description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.",
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"name": "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary",
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"prefix": "xlmod",
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"tracker": "https://github.com/HUPO-PSI/xlmod-CV/issues",
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"version": "1.5.
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"version.iri": "http://purl.obolibrary.org/obo/xlmod/1.5.
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"version": "1.5.1",
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"version.iri": "http://purl.obolibrary.org/obo/xlmod/1.5.1/xlmod.owl"
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},
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"xpo": {
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"description": "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.",
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"name": "EDAM - The ontology of data analysis and management",
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"prefix": "edam",
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"tracker": "https://github.com/edamontology/edamontology/issues",
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"uri_format": "http://edamontology.org/data_$1",
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"version.iri": "http://edamontology.org/1.25-20240924T0027Z-unstable(1.26)"
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},
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"edcc": {
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bioregistry/external/ols/tib.py
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"r3d100010427": {
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"description": "The Research Data Centre (Forschungsdatenzentrum, FDZ) at the Institute for Educational Quality Improvement (Institut zur Qualitätsentwicklung im Bildungswesen, IQB) archives and documents data sets resulting from national and international assessment studies (such as DESI, PIRLS, PISA, IQB-Bildungstrends). Moreover, the FDZ makes these data sets available for re- and secondary analysis. Members of the scientific community can apply for access to the data sets archived at the FDZ.",
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"doi": "10.17616/R3M30D",
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"homepage": "https://fdz.iqb.hu-berlin.de/",
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"homepage": "https://fdz.iqb.hu-berlin.de/en/",
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"license": "CC0",
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"name": "Forschungsdatenzentrum am IQB",
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"prefix": "r3d100010427",
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"description": "HALO-DB is the web platform of a data retrieval and long-term archive system.\nThe system was established to hold and to manage a wide range of data based on observations of the HALO research aircraft and data which are related to HALO observations. \nHALO (High-Altitude and LOng-range aircraft) is the new German research aircraft (German Science Community (DFG)). The aircraft, a Gulfstream GV-550 Business-Jet, is strongly modified for the application as a research platform.\nHALO offers several advantages for scientific campaigns, such as its high range of more than 10000 km, a high maximum altitude of more than 15 km, as well as a relatively high payload.",
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"doi": "10.17616/R39Q0T",
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"homepage": "https://halo-db.pa.op.dlr.de/",
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"license": "Copyrights",
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"name": "HALO database",
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"prefix": "r3d100011958",
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"synonyms": [
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"r3d100013459": {
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"description": "The Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) onboard the ENVISAT satellite provided atmospheric infrared limb emission spectra. From these, profiles of temperature and atmospheric trace gases were retrieved using the research data processor developed at the Institut für Meteorologie und Klimaforschung (IMK), which is complemented by the component of non-local thermodynamic equilibrium (non-LTE) treatment from the Instituto de Astrofísica de Andalucía (IAA). The MIPAS data products on this server are commonly known as IMK/IAA MIPAS Level2 data products. The MIPAS instrument measured during two time frames: from 2002 to 2004 in full spectral resolution (high resolution = HR aka full resolution = FR), and from 2005 to 2012 in reduced spectral, but improved spatial resolution (reduced resolution = RR aka optimized resolution = OR). For this reason, there are different version numbers covering the full MIPAS mission period: xx for the HR/FR period, and 2xx for the RR/OR period (example: 61 for HR/FR, 261 for RR/OR). Beyond this, measurements were conducted in different modes covering different altitude ranges during the RR period: Nominal (6 – 70 km), MA (18 – 102 km), NLC (39 – 102 km), UA (42 – 172 km), UTLS-1 (5.5 – 19 km), UTLS-2 (12 – 42 km), AE (7 – 38 km). The non-nominal modes are identified by the following version numbers: MA = 5xx, NLC = 7xx, UA = 6xx, UTLS-1/2 = 1xx (no retrievals for AE mode).",
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"homepage": "https://www.imkasf.kit.edu/english/308.php",
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"Daten der qualitativen Bildungsforschung"
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},
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"r3d100014542": {
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"description": "NewPsy4u is a secure data archiving and HPC processing system. The NewPsy4u platform uses a robust infrastructure to provide researchers with a simple interface for analysing, searching, retrieving and disseminating their biomedical data. With hundreds of investigators across the globe and more than few thousand of downloadable attributes, NewPsy4u aims to become a widespread resource for brain analyses. NewPsy4u platform guarantees reliability with a fault-tolerant network to prevent system failure.",
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"description": "The “Digital Collection” of the Munich University of Music and Theatre (Hochschule für Musik und Theater München - HMTM) is used for the publication and archiving of digitized holdings from the university's library and also functions as an open access repository and media library for the publication of digital publications by members of the university.",
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"doi": "10.17616/R31NJNPR",
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"license": "CC0",
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},
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"description": "KI Data Repository is the institutional data repository for Karolinska Institutet (KI). KI Data Repository accepts data where KI is the research principal, i.e. where KI is the organization responsible for the data.\nThe published data descriptions are accessible through Researchdata.se https://www.re3data.org/repository/r3d100014673.",
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"doi": "10.17616/R31NJNUZ",
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"homepage": "https://kib.ki.se/en/kidr",
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"name": "KI Data Repository",
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},
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"description": "Edaphobase is a non-commercial data infrastructure developed and hosted by the Senckenberg Museum of Natural History Görlitz in Germany, combining data from heterogeneous sources on soil animals, their distribution and habitat parameters of their sites of occurrence and making this data available to the public in open access.\n\nEdaphobase currently includes data on Nematoda, Collembola, Oribatida, Gamasina, Chilopoda, Diplopoda, Isopoda, Enchytraeidae, and Lumbricidae. Edaphobase lives from the cooperation with numerous soil zoologists who upload their data to the database and thus make them available for overarching analyses and insight. The database currently focusses on Europe-wide soil-biodiversity data, but includes data from around the globe.\n\nEdaphobase is strongly geared towards common data re-use and provision of data and online analysis tools. It follows the FAIR principles and can offer DOIs for submitted data sets. The data warehouse is publically available (open access) via a web-based browser portal, the Edaphobase data-query portal.\n\nAll data (provided it is not anonymized or in an embargo period) can be queried and collated via multiple filters and be downloaded by registered users. Simple queries are possible as well as more sophisticated analyses of different data groups. Specific applications include, e.g., mapping taxa’s distributions, the elucidation of species-specific habitat preferences (niche space), or environmental correlations with population densities.\n\nEdaphobase is a data provider to the Global Biodiversity Information Facility (GBIF).",
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"homepage": "https://portal.edaphobase.org",
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"name": "Edaphobase",
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"prefix": "r3d100014734"
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}
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bioregistry/resolve.py
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from .schema.struct import AnnotatedURL, Collection
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bioregistry/resource_manager.py
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bioregistry/schema/__init__.py
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"""Data structures."""
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AnnotatedURL,
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Attributable,
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"RegistryQualities",
|
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"RegistrySchema",
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|
"Resource",
|
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"StatusCheck",
|
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|
"get_json_schema",
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|
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|
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|
bioregistry/schema/struct.py
CHANGED
|
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|
"Organization",
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"RDFFormat",
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"Registry",
|
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"Resource",
|
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"ResourceStatus",
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"StatusCheck",
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|
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|
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|
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|
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|
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|
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@@ -169,6 +172,7 @@ URI_FORMAT_PATHS = [
|
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|
("cellosaurus", URI_FORMAT_KEY),
|
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|
("prefixcommons", URI_FORMAT_KEY),
|
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|
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("tib", URI_FORMAT_KEY),
|
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|
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|
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|
return None
|
|
1772
1776
|
return f"{rv}$1"
|
|
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1777
|
|
|
1778
|
+
def _get_external_uri_format(self, metaprefix: str) -> str | None:
|
|
1779
|
+
return self.get_external(metaprefix).get(URI_FORMAT_KEY)
|
|
1780
|
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|
|
1774
1781
|
def get_biocontext_uri_format(self) -> str | None:
|
|
1775
1782
|
"""Get the BioContext URI format string for this entry, if available.
|
|
1776
1783
|
|
|
@@ -1780,7 +1787,7 @@ class Resource(BaseModel):
|
|
|
1780
1787
|
>>> get_resource("hgmd").get_biocontext_uri_format()
|
|
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|
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|
|
1782
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|
"""
|
|
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|
-
return self.
|
|
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|
+
return self._get_external_uri_format("biocontext")
|
|
1784
1791
|
|
|
1785
1792
|
def get_bartoc_uri_format(self) -> str | None:
|
|
1786
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|
"""Get the BARTOC URI format string for this entry, if available.
|
|
@@ -1791,7 +1798,7 @@ class Resource(BaseModel):
|
|
|
1791
1798
|
>>> get_resource("ddc").get_bartoc_uri_format()
|
|
1792
1799
|
'http://dewey.info/class/$1/e23/'
|
|
1793
1800
|
"""
|
|
1794
|
-
return self.
|
|
1801
|
+
return self._get_external_uri_format("bartoc")
|
|
1795
1802
|
|
|
1796
1803
|
def get_prefixcommons_prefix(self) -> str | None:
|
|
1797
1804
|
"""Get the Prefix Commons prefix."""
|
|
@@ -1806,7 +1813,7 @@ class Resource(BaseModel):
|
|
|
1806
1813
|
>>> get_resource("antweb").get_prefixcommons_uri_format()
|
|
1807
1814
|
'http://www.antweb.org/specimen.do?name=$1'
|
|
1808
1815
|
"""
|
|
1809
|
-
return self.
|
|
1816
|
+
return self._get_external_uri_format("prefixcommons")
|
|
1810
1817
|
|
|
1811
1818
|
def get_identifiers_org_prefix(self) -> str | None:
|
|
1812
1819
|
"""Get the MIRIAM/Identifiers.org prefix, if available.
|
bioregistry/version.py
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.3
|
|
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2
|
Name: bioregistry
|
|
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|
-
Version: 0.13.
|
|
3
|
+
Version: 0.13.10
|
|
4
4
|
Summary: Integrated registry of biological databases and nomenclatures
|
|
5
5
|
Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
|
|
6
6
|
Author: Charles Tapley Hoyt
|
|
@@ -1,11 +1,13 @@
|
|
|
1
|
-
bioregistry
|
|
1
|
+
bioregistry/.DS_Store,sha256=MtEQz-j0qLB8mBzZ2s0qvjaV6xHF3Z2A1YUEa_dogB8,10244
|
|
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|
+
bioregistry/__init__.py,sha256=ghFOK7i2zfm5vEwVF-xXuivIMD7giyImmmbhHlMfEQo,6742
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bioregistry/__main__.py,sha256=hfyt3xyxKdAp969VpjqhTMdpG7CxtDCA7y8bYc0-ZKU,92
|
|
3
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|
bioregistry/analysis/__init__.py,sha256=z0F0QjavayAY0-otbu92g1wR3KK5ZmRNS24r76nxVJI,41
|
|
4
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|
bioregistry/analysis/bioregistry_diff.py,sha256=0GEjk3OgjToUKO0nH4RmFUpZl8L2rikSy0qDDtqB2o4,10278
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|
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6
|
bioregistry/analysis/mapping_checking.py,sha256=QM5r2p67httXGd-LcinjwCyVmL4_d9pYSu98RrspsE8,8009
|
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|
-
bioregistry/analysis/paper_ranking.py,sha256=
|
|
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|
+
bioregistry/analysis/paper_ranking.py,sha256=YUupzOKpOpMLmRqXKgEPDe72zoIRYVu5Fmn5qqbgXgY,19711
|
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|
+
bioregistry/app/.DS_Store,sha256=NK1e45m6DjaPTOTxN8yC9uUYgE9W2jH55YNfoEQLPVM,6148
|
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|
bioregistry/app/__init__.py,sha256=Y2NMn6HNPdg398xdizYaS2tjSk4JX_luU1qehve5jXk,23
|
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bioregistry/app/api.py,sha256=
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bioregistry/app/cli.py,sha256=Zu3Kqf8TGONpxuWSfjLBSz-ohJVju1gugo5SZGjNhFQ,2306
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|
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|
bioregistry/app/constants.py,sha256=zu6C-hrYAi7XOY-REAp1KjwNjer7CcTJlsZ0ov2w5Q8,2015
|
|
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|
bioregistry/app/impl.py,sha256=cNdQYoHcDs3VLUnIlilNE1KSLUnJ-em2ftaDCvLr8X0,20941
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@@ -18,6 +20,7 @@ bioregistry/app/static/logo.svg,sha256=ppQehHfqK9Twey3FnVJm3nrKys5xZmfcvbnMOYNrj
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|
bioregistry/app/static/nfdi4chem.svg,sha256=jjHtKDadcnfgkfU_NGpuXb8E4oH8stbyWftZci6bm9s,5063
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|
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|
bioregistry/app/static/northeastern.svg,sha256=1TOrV0kNHLM9iEMhXjZBt1WYwmSRHmyJ5wSkNpfckdE,7086
|
|
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22
|
bioregistry/app/static/rwth-iac.svg,sha256=UpvCVjb9wflykVH-8r1QkpI5zEz-ID72nnobFQv6nP4,19228
|
|
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|
+
bioregistry/app/templates/.DS_Store,sha256=-h9BoY3FbmzzXlHeJRERn_I7ipCKSoYZbNch6jKcGHM,6148
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|
bioregistry/app/templates/base.html,sha256=BQxzPOOzuTu3Z-y4pio5nZGZNExpoUxqxJgmwQfW4Jc,10799
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|
bioregistry/app/templates/collection.html,sha256=Tgd4lkCNl2Bguw5wgq1yMj1kwv81V3fpwH_lsSx74GU,3761
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bioregistry/app/templates/collections.html,sha256=3G7qtao8nPlbMJN2i9DjwGvTqLi0Rbvl9_Vl7W48RPc,3474
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|
@@ -50,7 +53,7 @@ bioregistry/app/templates/resolve_errors/missing_providers.html,sha256=9xFAcxM7o
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bioregistry/app/templates/resource.html,sha256=5heriFhs2yaLAehxsYaRBmHA5Q6KUkzQSHr5DqhX1sI,41303
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|
bioregistry/app/templates/resources.html,sha256=HJdvJtF2FrkEVyfGLKD_5G0wlqDXEJrxzdJwObzLxTA,3930
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|
bioregistry/app/test.py,sha256=mr0erF32i45CWbkdoJeb907FTKoYiJsjUIe-XA_G2qI,2057
|
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|
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bioregistry/app/ui.py,sha256=
|
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|
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bioregistry/app/ui.py,sha256=Fh2Aq2q6ZJRQhLlbgnZ7xTzqMQFGxXKIqpb2Tu_0uzo,23934
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|
bioregistry/app/utils.py,sha256=pw2rQq8RnkDwv11BA1xRKyVlxNfMBlwVhoiCIKAJ0nY,8245
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|
bioregistry/app/wsgi.py,sha256=yUHziJFE9iixZEZgu02xqGa4ZEEy8xEU5O0XkNvdA8o,256
|
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|
bioregistry/benchmarks/__init__.py,sha256=M-bvh_Cz0MbpoIqAzEvL38fHIYvZzJO1OgSBNMaZDBI,38
|
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@@ -59,27 +62,29 @@ bioregistry/benchmarks/cli.py,sha256=6sdEKdZ9yea_5n9dtUDvhOfCDR1bTOrFKLCsKMOWGeE
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|
bioregistry/benchmarks/curie_parsing.py,sha256=cmEbpQdhciwqPwMtPBSijOgJbk6Olj4ljaMNqwzAfSo,3300
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bioregistry/benchmarks/curie_validation.py,sha256=MlJbVxRRzYX39Z1JuzT_ElI7ZUH0cn0kjpk_61eU1qY,4539
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|
bioregistry/benchmarks/uri_parsing.py,sha256=mRu0kf8uWH2yQT04ZRgqYpeMx-gyfD2pyehPwHaGKqg,2612
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bioregistry/bibliometrics.py,sha256=
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bioregistry/cli.py,sha256=
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|
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bioregistry/bibliometrics.py,sha256=NlwUz78KpoMzTBR_MNrdOXunQt8jEnDWgJx3FtaawBs,2164
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bioregistry/cli.py,sha256=viLC4itr1_zI9cZ93NqHJhjhwH0_rJ9B1ldnd8ogw-E,3368
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bioregistry/collection_api.py,sha256=ayuFB4A5_ZeCPeQYLogsCMEndonDcKOxUN-YzQ_C3dM,2378
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bioregistry/compare.py,sha256=zumg66bgfrYr5-WabdIGJlYbaTbsR2nyInwlTG8IXqY,25069
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bioregistry/constants.py,sha256=_E6YOFl7LtdbFllhapD0qfWTHUVUVNvXAtArpQX1o34,11919
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bioregistry/curation/.DS_Store,sha256=en3II7c-35LCfjtDGo7ecJ2jBvMxoW0ne70gH0sxTEw,6148
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bioregistry/curation/__init__.py,sha256=X_Qod6ZnK31NYxKw_hwOXc35TI3HBZQzkp1URkmQU-I,22
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bioregistry/curation/add_cessda.py,sha256=
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bioregistry/curation/add_cessda.py,sha256=Jx2H_jY9E3ZRBG78kHoY9DhcN1P7-qBr_iWV_y3HUMg,4204
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bioregistry/curation/add_co_providers.py,sha256=s14caK1lCRLBEW_NsbgIV93eqoBpr56kD1Ted5_KD8Y,1216
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bioregistry/curation/add_descriptions_from_gs.py,sha256=v5qomc7NSdPiSHOJZAsf7Jsc7Ia7Pcz7xu0e7Ejso6M,1055
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bioregistry/curation/add_examples.py,sha256=3S2F4BrbJebWG32AvnBG4rb0rzTC2mBuZzVucx58YcA,1295
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bioregistry/curation/add_examples_from_ols.py,sha256=g09hNkni-4jR_hzaJ-IYN8J8TV2Jk91htwXPDwi85As,2961
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bioregistry/curation/add_ontology_regexes.py,sha256=QdsMrma7meYPK_xCLj8U13XPM6ayWPG_LyL3WiAe7y4,1624
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bioregistry/curation/add_provider_status_curations.py,sha256=
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bioregistry/curation/add_provider_status_curations.py,sha256=_ydRS1AT4z06z1Ur9If7eyuSmWRoCMZQGM9t2dpofdI,1956
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bioregistry/curation/add_sweet.py,sha256=ooVbCzzoicj1Q0xsYCYF4CSt4GKLQUCMSy-lfiCue2E,5060
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bioregistry/curation/add_wikidata_database.py,sha256=TBzaBmTreXcxZII2ihSAu2iK5leSaiZ36k9e-In7J-4,1394
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bioregistry/curation/bulk_import.py,sha256=RwWPxtlV9HpIIdIu4JjKB_DgtP200sLQ5xzwNAiCcFg,2710
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bioregistry/curation/clean_licenses.py,sha256=01fy-DlpmkbyYV-F2V-2ofZ97D0nSFpJx4SCo0PcL5g,627
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bioregistry/curation/clean_name_suffixes.py,sha256=ItqqXYJKHymNy2-T37wwvFSSaWM7uuMeF2Im3CWZ0oI,729
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bioregistry/curation/clean_publications.py,sha256=
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bioregistry/curation/cleanup_authors.py,sha256=oVJgh6hONRQ1hqqXi2IeyIZsfYUyILdQH3tuNGdp9uM,2568
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bioregistry/curation/deprecation_diff.py,sha256=L3W8MX3IT3WG_S0t3hpdSKFaMXcN3EbjcIB9GWVcKpc,1555
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bioregistry/curation/enrich_publications.py,sha256=
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bioregistry/curation/enrich_publications.py,sha256=W7VL-TO3xC6K13pJIWp2He3KjD7Pc3vUox_6jonEyv0,5289
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bioregistry/curation/find_contact_groups.py,sha256=pktZ3B6Nn8GtutGs5WnFf7ykcIYR9KLcVMEVYdLAwdM,1122
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bioregistry/curation/fix_obo_purls.py,sha256=5mOn7KKOJvR9qNlMHIF17lzIrB8d7PIZLoBaA_1xKf0,581
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bioregistry/curation/import_pc_semiautomatic.py,sha256=enXSH29bLFdoVHpRNJaPbuXuSeX_JY-z8z2EFW07fFA,3555
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