bioregistry 0.13.8__py3-none-any.whl → 0.13.10__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (49) hide show
  1. bioregistry/.DS_Store +0 -0
  2. bioregistry/__init__.py +1 -1
  3. bioregistry/analysis/paper_ranking.py +6 -2
  4. bioregistry/app/.DS_Store +0 -0
  5. bioregistry/app/api.py +1 -2
  6. bioregistry/app/templates/.DS_Store +0 -0
  7. bioregistry/app/ui.py +3 -3
  8. bioregistry/bibliometrics.py +1 -1
  9. bioregistry/cli.py +1 -1
  10. bioregistry/curation/.DS_Store +0 -0
  11. bioregistry/curation/add_cessda.py +1 -1
  12. bioregistry/curation/add_provider_status_curations.py +1 -1
  13. bioregistry/curation/add_sweet.py +146 -0
  14. bioregistry/curation/clean_publications.py +1 -1
  15. bioregistry/curation/enrich_publications.py +1 -1
  16. bioregistry/data/bioregistry.json +6849 -619
  17. bioregistry/data/collections.json +24 -1
  18. bioregistry/data/curated_papers.tsv +9 -0
  19. bioregistry/data/metaregistry.json +1 -1
  20. bioregistry/export/rdf_export.py +1 -1
  21. bioregistry/export/tables_export.py +1 -1
  22. bioregistry/external/.DS_Store +0 -0
  23. bioregistry/external/aberowl/processed.json +23 -19
  24. bioregistry/external/bartoc/processed.json +5 -5
  25. bioregistry/external/biolink/processed.json +3 -0
  26. bioregistry/external/bioportal/agroportal.json +3 -3
  27. bioregistry/external/bioportal/bioportal.json +45 -17
  28. bioregistry/external/cellosaurus/processed.json +3 -3
  29. bioregistry/external/fairsharing/processed.json +6 -5
  30. bioregistry/external/integbio/processed.json +56 -55
  31. bioregistry/external/lov/processed.json +59 -0
  32. bioregistry/external/miriam/.DS_Store +0 -0
  33. bioregistry/external/obofoundry/processed.json +4 -4
  34. bioregistry/external/ols/__init__.py +13 -5
  35. bioregistry/external/ols/processed.json +6 -6
  36. bioregistry/external/ols/tib-processed.json +0 -1
  37. bioregistry/external/ols/tib.py +1 -0
  38. bioregistry/external/re3data/processed.json +24 -2
  39. bioregistry/record_accumulator.py +1 -1
  40. bioregistry/resolve.py +1 -2
  41. bioregistry/resource_manager.py +1 -1
  42. bioregistry/schema/.DS_Store +0 -0
  43. bioregistry/schema/__init__.py +24 -0
  44. bioregistry/schema/struct.py +10 -3
  45. bioregistry/version.py +1 -1
  46. {bioregistry-0.13.8.dist-info → bioregistry-0.13.10.dist-info}/METADATA +1 -1
  47. {bioregistry-0.13.8.dist-info → bioregistry-0.13.10.dist-info}/RECORD +49 -41
  48. {bioregistry-0.13.8.dist-info → bioregistry-0.13.10.dist-info}/WHEEL +1 -1
  49. {bioregistry-0.13.8.dist-info → bioregistry-0.13.10.dist-info}/entry_points.txt +0 -0
@@ -16,7 +16,7 @@ from typing import Any, ClassVar, TypeAlias
16
16
  import requests
17
17
  from pydantic import BaseModel
18
18
 
19
- from bioregistry.constants import RAW_DIRECTORY
19
+ from bioregistry.constants import RAW_DIRECTORY, URI_FORMAT_KEY
20
20
  from bioregistry.external.alignment_utils import Aligner, load_processed
21
21
  from bioregistry.parse_version_iri import parse_obo_version_iri
22
22
  from bioregistry.utils import OLSBrokenError
@@ -74,6 +74,7 @@ def get_ols_base(
74
74
  processed_path: Path,
75
75
  raw_path: Path,
76
76
  version_processing_config_path: Path | None = None,
77
+ skip_uri_format: set[str] | None = None,
77
78
  ) -> OlsRv:
78
79
  """Get an OLS registry."""
79
80
  if processed_path.exists() and not force_download:
@@ -105,7 +106,11 @@ def get_ols_base(
105
106
  version_processing_config = version_processing_configurations.get(ols_id)
106
107
  if version_processing_config is None:
107
108
  logger.warning("[%s] need to curate processing file", ols_id)
108
- record = _process(ontology, version_processing_config=version_processing_config)
109
+ record = _process(
110
+ ontology,
111
+ version_processing_config=version_processing_config,
112
+ skip_uri_format=skip_uri_format,
113
+ )
109
114
  if not record:
110
115
  continue
111
116
  processed[ols_id] = record
@@ -243,7 +248,10 @@ def _get_version(
243
248
 
244
249
 
245
250
  def _process(
246
- ols_entry: Mapping[str, Any], *, version_processing_config: OLSConfig | None = None
251
+ ols_entry: Mapping[str, Any],
252
+ *,
253
+ version_processing_config: OLSConfig | None = None,
254
+ skip_uri_format: set[str] | None = None,
247
255
  ) -> dict[str, str] | None:
248
256
  ols_id = ols_entry["ontologyId"]
249
257
  config = ols_entry["config"]
@@ -276,8 +284,8 @@ def _process(
276
284
  # on tracker / homepage
277
285
 
278
286
  base_uris = config.get("baseUris", [])
279
- if base_uris:
280
- rv["uri_format"] = base_uris[0] + "$1"
287
+ if base_uris and (not skip_uri_format or ols_id not in skip_uri_format):
288
+ rv[URI_FORMAT_KEY] = base_uris[0] + "$1"
281
289
 
282
290
  download = _clean_url(config["fileLocation"])
283
291
  if download is None:
@@ -551,8 +551,8 @@
551
551
  "name": "The Drug Ontology",
552
552
  "prefix": "dron",
553
553
  "tracker": "https://github.com/ufbmi/dron/issues",
554
- "version": "2025-07-19",
555
- "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-07-19/dron.owl"
554
+ "version": "2025-11-20",
555
+ "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-11-20/dron.owl"
556
556
  },
557
557
  "duo": {
558
558
  "description": "DUO is an ontology which represent data use conditions.",
@@ -1402,8 +1402,8 @@
1402
1402
  "name": "Mass spectrometry ontology",
1403
1403
  "prefix": "ms",
1404
1404
  "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
1405
- "version": "4.1.215",
1406
- "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.215/ms.owl"
1405
+ "version": "4.1.216",
1406
+ "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.216/ms.owl"
1407
1407
  },
1408
1408
  "msio": {
1409
1409
  "description": "an application ontology for supporting description and annotation of mass-spectrometry and nmr-spectroscopy based metabolomics experiments and fluxomics studies.",
@@ -2492,8 +2492,8 @@
2492
2492
  "name": "HUPO-PSI cross-linking and derivatization reagents controlled vocabulary",
2493
2493
  "prefix": "xlmod",
2494
2494
  "tracker": "https://github.com/HUPO-PSI/xlmod-CV/issues",
2495
- "version": "1.5.0",
2496
- "version.iri": "http://purl.obolibrary.org/obo/xlmod/1.5.0/xlmod.owl"
2495
+ "version": "1.5.1",
2496
+ "version.iri": "http://purl.obolibrary.org/obo/xlmod/1.5.1/xlmod.owl"
2497
2497
  },
2498
2498
  "xpo": {
2499
2499
  "description": "XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevis and tropicalis.",
@@ -888,7 +888,6 @@
888
888
  "name": "EDAM - The ontology of data analysis and management",
889
889
  "prefix": "edam",
890
890
  "tracker": "https://github.com/edamontology/edamontology/issues",
891
- "uri_format": "http://edamontology.org/data_$1",
892
891
  "version.iri": "http://edamontology.org/1.25-20240924T0027Z-unstable(1.26)"
893
892
  },
894
893
  "edcc": {
@@ -46,6 +46,7 @@ def get_tib_ts(*, force_download: bool = False) -> OlsRv:
46
46
  processed_path=PROCESSED_PATH,
47
47
  raw_path=RAW_PATH,
48
48
  version_processing_config_path=VERSION_PROCESSING_CONFIG_PATH,
49
+ skip_uri_format={"edam"},
49
50
  )
50
51
 
51
52
 
@@ -4172,7 +4172,7 @@
4172
4172
  "r3d100010427": {
4173
4173
  "description": "The Research Data Centre (Forschungsdatenzentrum, FDZ) at the Institute for Educational Quality Improvement (Institut zur Qualitätsentwicklung im Bildungswesen, IQB) archives and documents data sets resulting from national and international assessment studies (such as DESI, PIRLS, PISA, IQB-Bildungstrends). Moreover, the FDZ makes these data sets available for re- and secondary analysis. Members of the scientific community can apply for access to the data sets archived at the FDZ.",
4174
4174
  "doi": "10.17616/R3M30D",
4175
- "homepage": "https://fdz.iqb.hu-berlin.de/",
4175
+ "homepage": "https://fdz.iqb.hu-berlin.de/en/",
4176
4176
  "license": "CC0",
4177
4177
  "name": "Forschungsdatenzentrum am IQB",
4178
4178
  "prefix": "r3d100010427",
@@ -16958,6 +16958,7 @@
16958
16958
  "description": "HALO-DB is the web platform of a data retrieval and long-term archive system.\nThe system was established to hold and to manage a wide range of data based on observations of the HALO research aircraft and data which are related to HALO observations. \nHALO (High-Altitude and LOng-range aircraft) is the new German research aircraft (German Science Community (DFG)). The aircraft, a Gulfstream GV-550 Business-Jet, is strongly modified for the application as a research platform.\nHALO offers several advantages for scientific campaigns, such as its high range of more than 10000 km, a high maximum altitude of more than 15 km, as well as a relatively high payload.",
16959
16959
  "doi": "10.17616/R39Q0T",
16960
16960
  "homepage": "https://halo-db.pa.op.dlr.de/",
16961
+ "license": "Copyrights",
16961
16962
  "name": "HALO database",
16962
16963
  "prefix": "r3d100011958",
16963
16964
  "synonyms": [
@@ -27712,7 +27713,7 @@
27712
27713
  "r3d100013459": {
27713
27714
  "description": "The Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) onboard the ENVISAT satellite provided atmospheric infrared limb emission spectra. From these, profiles of temperature and atmospheric trace gases were retrieved using the research data processor developed at the Institut für Meteorologie und Klimaforschung (IMK), which is complemented by the component of non-local thermodynamic equilibrium (non-LTE) treatment from the Instituto de Astrofísica de Andalucía (IAA). The MIPAS data products on this server are commonly known as IMK/IAA MIPAS Level2 data products. The MIPAS instrument measured during two time frames: from 2002 to 2004 in full spectral resolution (high resolution = HR aka full resolution = FR), and from 2005 to 2012 in reduced spectral, but improved spatial resolution (reduced resolution = RR aka optimized resolution = OR). For this reason, there are different version numbers covering the full MIPAS mission period: xx for the HR/FR period, and 2xx for the RR/OR period (example: 61 for HR/FR, 261 for RR/OR). Beyond this, measurements were conducted in different modes covering different altitude ranges during the RR period: Nominal (6 – 70 km), MA (18 – 102 km), NLC (39 – 102 km), UA (42 – 172 km), UTLS-1 (5.5 – 19 km), UTLS-2 (12 – 42 km), AE (7 – 38 km). The non-nominal modes are identified by the following version numbers: MA = 5xx, NLC = 7xx, UA = 6xx, UTLS-1/2 = 1xx (no retrievals for AE mode).",
27714
27715
  "doi": "10.17616/R31NJMVN",
27715
- "homepage": "https://www.imk-asf.kit.edu/english/308.php",
27716
+ "homepage": "https://www.imkasf.kit.edu/english/308.php",
27716
27717
  "name": "IMK/IAA generated MIPAS/Envisat data",
27717
27718
  "prefix": "r3d100013459"
27718
27719
  },
@@ -34527,6 +34528,12 @@
34527
34528
  "Daten der qualitativen Bildungsforschung"
34528
34529
  ]
34529
34530
  },
34531
+ "r3d100014542": {
34532
+ "description": "NewPsy4u is a secure data archiving and HPC processing system. The NewPsy4u platform uses a robust infrastructure to provide researchers with a simple interface for analysing, searching, retrieving and disseminating their biomedical data. With hundreds of investigators across the globe and more than few thousand of downloadable attributes, NewPsy4u aims to become a widespread resource for brain analyses. NewPsy4u platform guarantees reliability with a fault-tolerant network to prevent system failure.",
34533
+ "homepage": "https://newpsy4u.eu",
34534
+ "name": "NewPsy4U",
34535
+ "prefix": "r3d100014542"
34536
+ },
34530
34537
  "r3d100014543": {
34531
34538
  "description": "The “Digital Collection” of the Munich University of Music and Theatre (Hochschule für Musik und Theater München - HMTM) is used for the publication and archiving of digitized holdings from the university's library and also functions as an open access repository and media library for the publication of digital publications by members of the university.",
34532
34539
  "doi": "10.17616/R31NJNPR",
@@ -35537,5 +35544,20 @@
35537
35544
  "license": "CC0",
35538
35545
  "name": "OstData",
35539
35546
  "prefix": "r3d100014727"
35547
+ },
35548
+ "r3d100014731": {
35549
+ "description": "KI Data Repository is the institutional data repository for Karolinska Institutet (KI). KI Data Repository accepts data where KI is the research principal, i.e. where KI is the organization responsible for the data.\nThe published data descriptions are accessible through Researchdata.se https://www.re3data.org/repository/r3d100014673.",
35550
+ "doi": "10.17616/R31NJNUZ",
35551
+ "homepage": "https://kib.ki.se/en/kidr",
35552
+ "license": "CC0",
35553
+ "name": "KI Data Repository",
35554
+ "prefix": "r3d100014731"
35555
+ },
35556
+ "r3d100014734": {
35557
+ "description": "Edaphobase is a non-commercial data infrastructure developed and hosted by the Senckenberg Museum of Natural History Görlitz in Germany, combining data from heterogeneous sources on soil animals, their distribution and habitat parameters of their sites of occurrence and making this data available to the public in open access.\n\nEdaphobase currently includes data on Nematoda, Collembola, Oribatida, Gamasina, Chilopoda, Diplopoda, Isopoda, Enchytraeidae, and Lumbricidae. Edaphobase lives from the cooperation with numerous soil zoologists who upload their data to the database and thus make them available for overarching analyses and insight. The database currently focusses on Europe-wide soil-biodiversity data, but includes data from around the globe.\n\nEdaphobase is strongly geared towards common data re-use and provision of data and online analysis tools. It follows the FAIR principles and can offer DOIs for submitted data sets. The data warehouse is publically available (open access) via a web-based browser portal, the Edaphobase data-query portal.\n\nAll data (provided it is not anonymized or in an embargo period) can be queried and collated via multiple filters and be downloaded by registered users. Simple queries are possible as well as more sophisticated analyses of different data groups. Specific applications include, e.g., mapping taxa’s distributions, the elucidation of species-specific habitat preferences (niche space), or environmental correlations with population densities.\n\nEdaphobase is a data provider to the Global Biodiversity Information Facility (GBIF).",
35558
+ "homepage": "https://portal.edaphobase.org",
35559
+ "license": "CC",
35560
+ "name": "Edaphobase",
35561
+ "prefix": "r3d100014734"
35540
35562
  }
35541
35563
  }
@@ -12,7 +12,7 @@ import curies
12
12
  from curies import Converter, Record
13
13
  from curies.w3c import NCNAME_RE
14
14
 
15
- from .schema.struct import Resource
15
+ from .schema import Resource
16
16
 
17
17
  __all__ = [
18
18
  "get_converter",
bioregistry/resolve.py CHANGED
@@ -11,8 +11,7 @@ from typing import Any, Literal, overload
11
11
  import curies
12
12
 
13
13
  from .resource_manager import MetaresourceAnnotatedValue, manager
14
- from .schema import Attributable, Resource
15
- from .schema.struct import AnnotatedURL, Collection
14
+ from .schema import AnnotatedURL, Attributable, Collection, Resource
16
15
 
17
16
  __all__ = [
18
17
  "add_resource",
@@ -44,11 +44,11 @@ from .schema import (
44
44
  Attributable,
45
45
  Collection,
46
46
  Context,
47
+ MetaprefixAnnotatedValue,
47
48
  Registry,
48
49
  Resource,
49
50
  sanitize_model,
50
51
  )
51
- from .schema.struct import MetaprefixAnnotatedValue
52
52
  from .schema_utils import (
53
53
  _collections_from_path,
54
54
  _contexts_from_path,
Binary file
@@ -1,26 +1,50 @@
1
1
  """Data structures."""
2
2
 
3
3
  from .struct import (
4
+ AnnotatedURL,
4
5
  Attributable,
5
6
  Author,
6
7
  Collection,
7
8
  Context,
9
+ MetaprefixAnnotatedValue,
10
+ Organization,
11
+ Provider,
8
12
  Publication,
13
+ RDFFormat,
9
14
  Registry,
15
+ RegistryGovernance,
16
+ RegistryQualities,
17
+ RegistrySchema,
10
18
  Resource,
19
+ StatusCheck,
20
+ deduplicate_publications,
21
+ generate_schema,
11
22
  get_json_schema,
23
+ schema_status_map,
12
24
  )
13
25
  from .utils import sanitize_mapping, sanitize_model
14
26
 
15
27
  __all__ = [
28
+ "AnnotatedURL",
16
29
  "Attributable",
17
30
  "Author",
18
31
  "Collection",
19
32
  "Context",
33
+ "MetaprefixAnnotatedValue",
34
+ "Organization",
35
+ "Provider",
20
36
  "Publication",
37
+ "RDFFormat",
21
38
  "Registry",
39
+ "RegistryGovernance",
40
+ "RegistryQualities",
41
+ "RegistrySchema",
22
42
  "Resource",
43
+ "StatusCheck",
44
+ "deduplicate_publications",
45
+ "generate_schema",
23
46
  "get_json_schema",
24
47
  "sanitize_mapping",
25
48
  "sanitize_model",
49
+ "schema_status_map",
26
50
  ]
@@ -56,9 +56,12 @@ __all__ = [
56
56
  "Organization",
57
57
  "Provider",
58
58
  "Publication",
59
+ "RDFFormat",
59
60
  "Registry",
60
61
  "Resource",
61
62
  "ResourceStatus",
63
+ "StatusCheck",
64
+ "deduplicate_publications",
62
65
  "get_json_schema",
63
66
  ]
64
67
 
@@ -169,6 +172,7 @@ URI_FORMAT_PATHS = [
169
172
  ("cellosaurus", URI_FORMAT_KEY),
170
173
  ("prefixcommons", URI_FORMAT_KEY),
171
174
  ("rrid", URI_FORMAT_KEY),
175
+ ("tib", URI_FORMAT_KEY),
172
176
  ]
173
177
 
174
178
 
@@ -1771,6 +1775,9 @@ class Resource(BaseModel):
1771
1775
  return None
1772
1776
  return f"{rv}$1"
1773
1777
 
1778
+ def _get_external_uri_format(self, metaprefix: str) -> str | None:
1779
+ return self.get_external(metaprefix).get(URI_FORMAT_KEY)
1780
+
1774
1781
  def get_biocontext_uri_format(self) -> str | None:
1775
1782
  """Get the BioContext URI format string for this entry, if available.
1776
1783
 
@@ -1780,7 +1787,7 @@ class Resource(BaseModel):
1780
1787
  >>> get_resource("hgmd").get_biocontext_uri_format()
1781
1788
  'http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$1'
1782
1789
  """
1783
- return self.get_external("biocontext").get(URI_FORMAT_KEY)
1790
+ return self._get_external_uri_format("biocontext")
1784
1791
 
1785
1792
  def get_bartoc_uri_format(self) -> str | None:
1786
1793
  """Get the BARTOC URI format string for this entry, if available.
@@ -1791,7 +1798,7 @@ class Resource(BaseModel):
1791
1798
  >>> get_resource("ddc").get_bartoc_uri_format()
1792
1799
  'http://dewey.info/class/$1/e23/'
1793
1800
  """
1794
- return self.get_external("bartoc").get(URI_FORMAT_KEY)
1801
+ return self._get_external_uri_format("bartoc")
1795
1802
 
1796
1803
  def get_prefixcommons_prefix(self) -> str | None:
1797
1804
  """Get the Prefix Commons prefix."""
@@ -1806,7 +1813,7 @@ class Resource(BaseModel):
1806
1813
  >>> get_resource("antweb").get_prefixcommons_uri_format()
1807
1814
  'http://www.antweb.org/specimen.do?name=$1'
1808
1815
  """
1809
- return self.get_external("prefixcommons").get(URI_FORMAT_KEY)
1816
+ return self._get_external_uri_format("prefixcommons")
1810
1817
 
1811
1818
  def get_identifiers_org_prefix(self) -> str | None:
1812
1819
  """Get the MIRIAM/Identifiers.org prefix, if available.
bioregistry/version.py CHANGED
@@ -11,7 +11,7 @@ __all__ = [
11
11
  "get_version",
12
12
  ]
13
13
 
14
- VERSION = "0.13.8"
14
+ VERSION = "0.13.10"
15
15
 
16
16
 
17
17
  def get_git_hash() -> str | None:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: bioregistry
3
- Version: 0.13.8
3
+ Version: 0.13.10
4
4
  Summary: Integrated registry of biological databases and nomenclatures
5
5
  Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
6
6
  Author: Charles Tapley Hoyt
@@ -1,11 +1,13 @@
1
- bioregistry/__init__.py,sha256=H_NXlpw8NaiZq1yUAFMdB4BMrgS3ht--9efzB7GW6sc,6749
1
+ bioregistry/.DS_Store,sha256=MtEQz-j0qLB8mBzZ2s0qvjaV6xHF3Z2A1YUEa_dogB8,10244
2
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+ bioregistry/external/lov/processed.json,sha256=e7LWe7xhaiBOMz9lCdAbsYAVWotheNmB5NPhaspJRC8,479432
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+ bioregistry/external/miriam/.DS_Store,sha256=UgtGnk8l1Yy0lhP02coFpdu_O1ethJwPURlpZRTp0LY,6148
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- bioregistry/external/obofoundry/processed.json,sha256=NUHl_74wbrjAswc5QXiBJz1NGLlFge6yIIDFPWBGh6o,225527
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- bioregistry/external/ols/__init__.py,sha256=0y0wEDz8NmD2vF4zPtOF9wilVAvIHJK0VRw4OSrVNX0,11285
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- bioregistry/external/ols/processed.json,sha256=1AjUabpLsVemU1n77BfsXpe82ww_anoP0Hgr2ocL6pQ,161219
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+ bioregistry/external/obofoundry/processed.json,sha256=_TOdQscMff6v2tuoo9PstHUsCLVfW7VxBHdP0EBq9S0,225532
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+ bioregistry/external/ols/__init__.py,sha256=EpX_3gpB6Lc5PpqXF_tvAmr57fAVbBtQqswDlrfTC7w,11541
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+ bioregistry/external/ols/processed.json,sha256=tKB9IeBmRBYcT0cqsPq7DMxsrCsumyHN4VQnSVHbseA,161219
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+ bioregistry/external/ols/tib-processed.json,sha256=LQvtTlcAavxLirqkylBkhlcTsG9JtXBbB4eNQ7KoKtI,198055
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- bioregistry/external/ols/tib.py,sha256=Qo3B9lS4lt6qhr1AnTBoNkkxP-unWbVEH2aW1upRsn8,1874
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+ bioregistry/external/ols/tib.py,sha256=bUL6vF0yPcuuPcNLUQSqAK9x12RdIQlST7XRU25iGUI,1908
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- bioregistry/external/re3data/processed.json,sha256=OChUJg1Z85BrPF3-rTSHFrBQajGhkQuf_7o3_zguYvU,2715885
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+ bioregistry/external/re3data/processed.json,sha256=3RMG5Z7icoLfiRVnetLcGd5xyiZRbPG8Oy8qiThWugI,2718882
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@@ -199,15 +206,16 @@ bioregistry/pandas.py,sha256=0F5FMgMmwuV1PMWEyl5A4liLwtrPcEyZSj5W1gFal1I,19558
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- bioregistry/record_accumulator.py,sha256=U5NiwdlfuJ4VbpBjq_32dA3XuDSQg3gE7fo7doL39mg,20565
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+ bioregistry/record_accumulator.py,sha256=gbRPS7eWf3daZyuEVCxC-zUqDPz7eX0noqJpoAy7RWw,20558
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  bioregistry/reference.py,sha256=7r13osgKqjeTzHu84MPuNRbxWYmZ89eBgdaPHHxpL2o,9020
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- bioregistry/resolve.py,sha256=73rMeadqicCXxKX09ovF8BM6r2O4U7cVOy04haENCbY,31979
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+ bioregistry/resolve.py,sha256=j1Z65pN2NvNsPX5ywhbio_kefUoqTT6MSsnoa-H7nWI,31953
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- bioregistry/resource_manager.py,sha256=UYvUMmYK1GLcbJRSbOtSyGq20f24K1g8rTeilYR7KxE,82603
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- bioregistry/schema/__init__.py,sha256=5sug6y2IhhDy9fMgoiseLnJwuj1682NRftSEbOToHVo,427
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+ bioregistry/resource_manager.py,sha256=fK4NU3-3q4gnm6tDLBsZmaqlIPSzBUB209k68NX0E3Y,82581
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+ bioregistry/schema/.DS_Store,sha256=ZtEuRder-nSDznMn7EklKQngSW-_kJxHtcU0KF_qRbc,6148
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+ bioregistry/schema/__init__.py,sha256=P_YbooDhrvtLt1L-6DrGbB0y2vsk_FxUXCbUIQNCZEo,957
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- bioregistry/schema/struct.py,sha256=UbJ3n32EbIyjGSbdJHJOQhEkDduq7vWooJanGdWuSyo,128595
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+ bioregistry/schema/struct.py,sha256=FOo7PtuoeW3UFbqWM8eQsz7DUmvTctgieRdZaESfOlM,128805
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  bioregistry/schema/utils.py,sha256=CBFOP0sz_XYWRKNJooElgrF6IVl-q4Dhsc8ynUT6ibE,994
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  bioregistry/summary.py,sha256=hxGeDedxqQ4MVT_svs-PHI_ICAeRCEN8nS1IoF-CXFE,10449
@@ -217,8 +225,8 @@ bioregistry/utils.py,sha256=UtoHc3XzaUxv5aayJkcGyE5qjYP36SjvnVGt9sG2X-U,9207
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  bioregistry/validate/__init__.py,sha256=ffUYuZYBcPGl1Ggw65DB9NZO4ma1tlsflRJRpKE4JWw,28
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  bioregistry/validate/utils.py,sha256=KEGu6AReWc8LH3SDPjjNH5BA8YiTpGYjYRItOjoCc58,9578
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- bioregistry/version.py,sha256=0hlLhMhqGDbjJP4VegegxsFOJgVpvgCJzuSFrB072yM,1017
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- bioregistry-0.13.8.dist-info/WHEEL,sha256=YUH1mBqsx8Dh2cQG2rlcuRYUhJddG9iClegy4IgnHik,79
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- bioregistry-0.13.8.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
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- bioregistry-0.13.8.dist-info/METADATA,sha256=wm-KtAKv8BtBPNj1wl8ZCCqnjL7n-Aj44qsL9a2S6cw,36839
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- bioregistry-0.13.8.dist-info/RECORD,,
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+ bioregistry/version.py,sha256=9qZ7LKRMCbunSz9GWXsal63o0sBSXJWi3nlQApCZo3A,1018
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+ bioregistry-0.13.10.dist-info/WHEEL,sha256=ZHijuPszqKbNczrBXkSuoxdxocbxgFghqnequ9ZQlVk,79
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+ bioregistry-0.13.10.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
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+ bioregistry-0.13.10.dist-info/METADATA,sha256=-tCTYbSkkoC85y7F5Y7tHswbo0gw13ePx73nBmn_BdM,36840
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+ bioregistry-0.13.10.dist-info/RECORD,,
@@ -1,4 +1,4 @@
1
1
  Wheel-Version: 1.0
2
- Generator: uv 0.9.11
2
+ Generator: uv 0.9.10
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any