bioregistry 0.13.16__py3-none-any.whl → 0.13.17__py3-none-any.whl

bioregistry/external/aberowl/processed.json

@@ -1573,6 +1573,13 @@
     "prefix": "CMECS",
     "version": "1.1.0"
   },
+  "CMEO": {
+    "description": "CMEO (Clinical Metadata Exploration Ontology) is an ontology for representing and querying study- and variable-level metadata from clinical cohort studies in a consistent, machine-interpretable way. CMEO models the semantics of data elements (variables) and their key metadata needed for cross-cohort discovery and harmonization—such as human-readable labels/definitions, domain/type information (e.g., condition, measurement, medication), permissible categorical values, units, visit/timepoint context, derivation/provenance (e.g., computed variables), and basic descriptive statistics. It is designed to support metadata-driven tasks including cohort cataloguing, feasibility assessment, study retrieval, and identification of compatible variables across studies—without requiring access to patient-level data. It is intended to interoperate with controlled vocabularies and common clinical terminologies by linking data elements and value sets to external concept identifiers (e.g., OMOP concept IDs, SNOMED CT, LOINC, RxNorm/ATC, UCUM) while remaining model-agnostic (i.e., not tied to a single CDM). , and identification of compatible variables across studies—without requiring access to patient-level data. CMEO is intended to interoperate with controlled vocabularies and common clinical terminologies by linking data elements and value sets to external concept identifiers (e.g., not tied to a single CDM).",
+    "download_owl": "http://aber-owl.net/media/ontologies/CMEO/1/cmeo.owl",
+    "name": "Clinical Metadata Exploration Ontology",
+    "prefix": "CMEO",
+    "version": "version 2"
+  },
   "CMF": {
     "name": "CranioMaxilloFacial ontology",
     "prefix": "CMF"
@@ -2707,7 +2714,7 @@
   },
   "EMAPA": {
     "description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.",
-    "download_owl": "http://aber-owl.net/media/ontologies/EMAPA/24/emapa.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/EMAPA/25/emapa.owl",
     "homepage": "http://www.informatics.jax.org/expression.shtml",
     "name": "Mouse Developmental Anatomy Ontology",
     "prefix": "EMAPA"
@@ -3337,7 +3344,7 @@
   },
   "FOODON": {
     "description": "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research",
-    "download_owl": "http://aber-owl.net/media/ontologies/FOODON/90/foodon.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/FOODON/91/foodon.owl",
     "homepage": "https://foodon.org/",
     "name": "Food Ontology",
     "prefix": "FOODON"
@@ -8427,6 +8434,13 @@
     "name": "taimoor Ontology",
     "prefix": "PRE-CLINICAL"
   },
+  "PREFER": {
+    "description": "PREFER is an ontology designed to integrate high-throughput bioprocess data, covering operational, environmental and process parameters across different scales of a precision fermentation process, to accelerate the development and scaling of biosustainable production processes., An ontology for PREcision FERmentation.",
+    "download_owl": "http://aber-owl.net/media/ontologies/PREFER/1/prefer.owl",
+    "name": "Precision Fermentation Ontology",
+    "prefix": "PREFER",
+    "version": "2025-12-22"
+  },
   "PREGONTO": {
     "description": "The pregnancy ontology is a biomedical ontology used for identifying pregnancies in routine health databases. The ontology was primarily developed for conducting surveillance of vaccine uptake in pregnant women in the UK.",
     "download_owl": "http://aber-owl.net/media/ontologies/PREGONTO/1/pregonto.owl",
@@ -10327,10 +10341,10 @@
   },
   "VFB_DRIVERS": {
     "description": "An ontology of Drosophila melanogaster drivers and expression patterns., An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.",
-    "download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/198/vfb_drivers.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/199/vfb_drivers.owl",
     "name": "vfb_drivers",
     "prefix": "VFB_DRIVERS",
-    "version": "2025-12-29"
+    "version": "2026-01-05"
   },
   "VHO": {
     "description": "Ontology of terms used for annotating data in Virtual Fly Brain, including anatomical templates.",

bioregistry/external/bartoc/processed.json

@@ -4568,7 +4568,7 @@
   "1674": {
     "description": "The GeoNames geographical database is available for download free of charge under a creative commons attribution license. It contains over 10 million geographical names and consists of over 9 million unique features whereof 2.8 million populated places and 5.5 million alternate names. All features are categorized into one out of nine feature classes and further subcategorized into one out of 645 feature codes. (...) The data is accessible free of charge through a number of webservices and a daily database export. GeoNames is already serving up to over 150 million web service requests per day.\n\nGeoNames is integrating geographical data such as names of places in various languages, elevation, population and others from various sources. All lat/long coordinates are in WGS84 (World Geodetic System 1984). Users may manually edit, correct and add new names using a user friendly wiki interface. GeoNames has Ambassadors in many countries who assist with their help and expertise.",
     "homepage": "http://www.geonames.org/",
-    "license": "CC-BY-3.0",
+    "license": "CC-BY-4.0",
     "name": "GeoNames",
     "prefix": "1674",
     "wikidata_database": "Q830106"
@@ -20121,6 +20121,12 @@
     "name": "IVOA DALI Examples",
     "prefix": "21005"
   },
+  "21006": {
+    "description": "vocnet represents an extension of skos-thes, which extends SKOS with elements of the international thesaurus standard ISO 25964-1 (2011).",
+    "homepage": "https://schema.vocnet.org/",
+    "name": "vocnet",
+    "prefix": "21006"
+  },
   "211": {
     "abbreviation": "CABT",
     "description": "The CAB Thesaurus is the essential search tool for all users of the CAB ABSTRACTS™ and Global Health databases and related products. The CAB Thesaurus is not only an invaluable aid for database users but it has many potential uses by individuals and organizations indexing their own information resources for both internal use and on the Internet.\n\nIts strengths include: Controlled vocabulary that has been in constant use since 1983; Regularly updated (current version released July 2017) (...); Broad coverage of pure and applied life sciences, technology and social sciences (...); Total number of terms approaching 2.7 million; Specific terminology for all subjects covered; Includes about 241,900 plant, animal and microorganism names; Broad, narrow and related terms to help users find relevant terminology; Cross-references from non-preferred synonyms to preferred terms; Multi-lingual, with Dutch, Portuguese and Spanish equivalents for most English terms, plus lesser content in Danish, Finnish, French, German, Italian, Norwegian and Swedish; American and British spelling variants; Relevant CAS registry numbers for chemicals; Commission notation for enzymes.",
@@ -21746,10 +21752,11 @@
   },
   "452": {
     "description": "Scope: 62 main groups, with about 9000 items down to the fourth hierarchy level.",
-    "homepage": "https://museumsvokabular.de/node/6",
+    "homepage": "https://museumsvokabular.de/grobsystematik/",
     "license": "CC BY-NC-SA 3.0",
     "name": "General Classification for Museums",
-    "prefix": "452"
+    "prefix": "452",
+    "wikidata_database": "Q126952524"
   },
   "453": {
     "description": "Keywords in this Thesaurus are referred to as preferred terms. Preferred terms are used in indexing the Australian Transport Index (ATRI) and are shown in bold type. Non-preferred terms are not used for indexing and are shown in italics; their role in the Thesaurus is to lead to the preferred term. Terms in the Thesaurus are listed in a single alphabetical sequence and appear in word-by-word order, so that 'Access road' appears before 'Accessibility'. This Thesaurus is designed to assist Australian researchers to access Australian and overseas literature on land transport. However, it may also be useful to those involved in metadata and knowledge management within the land transport arena.",
@@ -22019,7 +22026,8 @@
     "homepage": "https://museumsverband-hessen.de/de/veroeffentlichungen/arbeitshilfen-und-handreichungen",
     "license": "CC BY-NC-SA 3.0",
     "name": "Nomenclature for inventorying cultural history collections in museums",
-    "prefix": "489"
+    "prefix": "489",
+    "wikidata_database": "Q126952483"
   },
   "49": {
     "description": "Physical evidence, usually portable, resulting from past human activity or environmental remains that can be recovered from archaeological fieldwork. English Heritage takes a leading role in setting standards for recording the built and buried heritage. By setting standards that can be adopted by everyone, we can make sure that all records are consistent. In other words, if everyone uses the same words to describe the same monument, archaeological object, building material, etc, then anyone using this common language can easily index, retrieve and understand these records. With this aim in mind, English Heritage is continually developing new thesauri to provide structure and guidelines for the standardisation of terms to be used when creating new records of the past. Now, in our drive to disseminate these standards and promote their wider use, we are making available seven separate online thesauri. A tailor-made suite of programs has been developed, which uses a database to create a series of web pages for any chosen thesaurus. These can be easily accessed using a frames-capable browser and regularly updated as new terms are submitted and approved by our Data Standards Unit.\n\nNational cultural heritage thesauri and vocabularies have acted as standards for use by both national organizations and local authority Historic Environment Records but until now have lacked the persistent Linked Open Data (LOD) URIs that would allow them to act as vocabulary hubs for the Web of Data. The AHRC funded SENESCHAL project aims to make such vocabularies available online as Semantic Web resources. SENESCHAL will start with major vocabularies as exemplars and project partners will continue to make other vocabularies available. Other organizations are welcome to make use of the data and services which will be open licensed.\n\nRESTful web services will be developed for the project to make the vocabulary resources programmatically accessible and searchable. These will include the provision to ‘feed back’ new terms (concepts) suggested by users.",
@@ -22036,11 +22044,11 @@
     "wikidata_database": "Q11544935"
   },
   "491": {
-    "description": "A typology for museums and collections: 12 basic shapes of vessels as well as a hierarchy of these types of forms, the forms are represented by extensive drawings and photographs, each of which is presented in alphabetical order with numerous concrete object names Phrases and each illustrated by a photo.",
-    "homepage": "https://museumsvokabular.de/node/6",
-    "license": "CC BY-NC-SA 3.0",
+    "description": "A typology for museums and collections: 12 basic shapes of vessels as well as a hierarchy of these types of forms, the forms are represented by extensive drawings and photographs, each of which is presented in alphabetical order with numerous concrete object names Phrases and each illustrated by a photo. \"\n\nThe vocabulary is available online in multiple instances under different licenses; licensing depends on the respective platform.",
+    "homepage": "https://museumsvokabular.de/gefaesstypologie/",
     "name": "Typology of Vessels",
-    "prefix": "491"
+    "prefix": "491",
+    "wikidata_database": "Q136706277 "
   },
   "492": {
     "description": "The third edition of the Australian and New Zealand Standard Offence Classification (ANZSOC) has been developed for use within Australia and in New Zealand for the production and analysis of crime and justice statistics. It replaces the second edition of the Australian Standard Offence Classification (ASOC) and incorporates a title change from ASOC to ANZSOC and corrects some minor typographical errors only. The classification content and structure, which was updated in the second edition of ASOC following a review of the first edition of ASOC released in 1997, remains unchanged. The revised title ANZSOC reflects the international use of the framework to classify criminal behaviour and highlights the collaborative work occurring between Australia and New Zealand. The title change from ASOC to ANZSOC is also in accordance with the agreed policy between the Australian Bureau of Statistics (ABS) and Statistics New Zealand to harmonise classifications where possible. The objective of the ANZSOC is to provide a uniform national statistical framework for classifying criminal behaviour in the production and analysis of crime and justice statistics. The ANZSOC is used in Australian Bureau of Statistics statistical collections, Statistics New Zealand statistical collections, Australian police, criminal courts and corrective services agencies and New Zealand police and justice agencies.",
@@ -22083,11 +22091,11 @@
     "wikidata_database": "Q243350"
   },
   "497": {
-    "description": "Scope: 4 main groups with subdivision up to the 5th hierarchical level.",
-    "homepage": "https://museumsvokabular.de/node/6",
-    "license": "CC BY-NC-SA 3.0",
+    "description": "Thesaurus on agricultural implements, field cultivation, agricultural transport and utility vehicles, and tools (woodworking). \"Scope: 4 main groups with subdivision up to the 5th hierarchical level.\"\nLicensed under CC BY-NC-SA 2.0.",
+    "homepage": "https://museumsvokabular.de/ackerbaugerate-systematik/",
     "name": "Thesaurus of Agricultural Tools",
-    "prefix": "497"
+    "prefix": "497",
+    "wikidata_database": "Q126950719"
   },
   "498": {
     "description": "The project purpose is to develop and maintain a reference structured terminology in the domain of the cryosphere environment. The identification of the potential sources of terminology was carried out with the assistance of experts of the Arabba Avalanche Centre. The result consists of a certain number of lists of terms, usually contained in glossaries where they are supplied with one or more definitions and scarcely organised within a structure. In certain cases they are clustered in thematic areas. The terms of these lists were selected according to their pertinence and relevance.\n\nAt present we are working on a database of around 3.700 terms. The thematic areas, covered at present, deal with snow and ice physics, snow and ice morphology, snow and ice radiometry, remote sensing and GIS in cryosphere environment, sea ice, avalanches and glaciers. Concerning the vertical structure we adopted the Classification Scheme already in use for the development of the EARTh Thesaurus. The hierarchical setup is based on facets; according to its intrinsic features, the structure can be used as a semantic reference system, stable and partially independent from the context.\n\nSince the facet structure tends to scatter the terms under the more general referral category, we are implementing a thematic structure that will cluster the terms in themes representing specific sectors. The possibility of applying different thematic schemes allows the exploration of concepts according to different perspectives, which is able to emphasize particular and contingent aspects.",

bioregistry/external/bioportal/agroportal.json

@@ -542,6 +542,126 @@
     "prefix": "CDNO",
     "repository": "https://github.com/Southern-Cross-Plant-Science/cdno"
   },
+  "CEON-ACTOR": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "The Actor module of CEON (Circular Economy Ontology Network).",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Actor Module",
+    "prefix": "CEON-ACTOR",
+    "version": "0.4"
+  },
+  "CEON-ACTORODP": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A core ODP of the CEON ontology network, defining aspects of the actor concept.",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Actor ODP",
+    "prefix": "CEON-ACTORODP",
+    "version": "0.4"
+  },
+  "CEON-CVN": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A core module of the CEON ontology network, defining aspects of the circular value network (CVN) itself.",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Circular Value Network Module",
+    "prefix": "CEON-CVN",
+    "version": "0.3"
+  },
+  "CEON-ENERGY": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A module of the CEON ontology network defining aspects of the energy concept.",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Energy Module",
+    "prefix": "CEON-ENERGY",
+    "version": "0.2"
+  },
+  "CEON-MATERIAL": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "The Material module of CEON (Circular Economy Ontology Network).",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Material Module",
+    "prefix": "CEON-MATERIAL",
+    "version": "0.4"
+  },
+  "CEON-PLAN": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "The Plan module of CEON (Circular Economy Ontology Network).",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Plan Module",
+    "prefix": "CEON-PLAN",
+    "version": "0.1"
+  },
+  "CEON-PROCESS": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "The Process module of CEON (Circular Economy Ontology Network).",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Process Module",
+    "prefix": "CEON-PROCESS",
+    "version": "0.5"
+  },
+  "CEON-PROCESSODP": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A core ODP of the CEON ontology network, defining aspects of the process concept.",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Process ODP",
+    "prefix": "CEON-PROCESSODP",
+    "version": "0.5"
+  },
+  "CEON-PRODUCT": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "The Product module of CEON (Circular Economy Ontology Network).",
+    "name": "Circular Economy Ontology Network (CEON) - Product Module",
+    "prefix": "CEON-PRODUCT",
+    "version": "v2025-07-30"
+  },
+  "CEON-RESOURCEODP": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A core ODP of the CEON ontology network defining aspects of the resource concept.",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Resource ODP",
+    "prefix": "CEON-RESOURCEODP",
+    "version": "0.5"
+  },
+  "CEON-VALUE": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A core ODP of the CEON ontology network, defining aspects of the value concept.",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Value Module",
+    "prefix": "CEON-VALUE",
+    "version": "0.3"
+  },
   "CGO": {
     "contact": {
       "email": "jack.verhoosel@tno.nl",
@@ -1282,17 +1402,45 @@
     "repository": "https://github.com/rapw3k/DEMETER/tree/master/models",
     "version": "3.0"
   },
+  "DFC": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A common vocabulary for digital food platforms",
+    "name": "Data Food Consortium Ontology",
+    "prefix": "DFC",
+    "version": "v4.0"
+  },
   "DFC-B": {
     "contact": {
-      "email": "baptiste.darnala@elzeard.co",
-      "name": "Baptiste Darnala"
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
     },
-    "description": "This ontology will help to describe the business model applied to the products described in the product ontology of the Data Food Consortium. Information about products, offers, orders, and logistics are described to facilitate the distribution of products in short circuits. , A common vocabulary for digital food platforms (Business Part)",
-    "license": "https://www.gnu.org/licenses/agpl-3.0.en.html",
+    "description": "DFC Business Ontology",
     "name": "DataFoodConsortium - Business Ontology",
     "prefix": "DFC-B",
-    "repository": "https://github.com/datafoodconsortium/ontology",
-    "version": "1.16.0"
+    "version": "v3.0"
+  },
+  "DFC-P": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A common vocabulary for digital food platforms (Product Glossary Part)",
+    "name": "A common vocabulary for digital food platforms (Product Glossary Part)",
+    "prefix": "DFC-P",
+    "version": "v4.0"
+  },
+  "DFC-T": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "A common vocabulary for digital food platforms (Technical Part)",
+    "name": "A common vocabulary for digital food platforms (Technical Part)",
+    "prefix": "DFC-T",
+    "version": "v4.0"
   },
   "DSW": {
     "contact": {
@@ -1576,6 +1724,17 @@
     "repository": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology",
     "version": "1.0.0"
   },
+  "FOO": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "This ontology describes wildlife observations generated by sensors.",
+    "license": "CC BY-SA 4.0",
+    "name": "Forest Observatory Ontology (FOO)",
+    "prefix": "FOO",
+    "version": "BBC Wildlife Ontology Reused 26 June 2024"
+  },
   "FOOD": {
     "contact": {
       "email": "nauer@loria.fr",
@@ -1674,6 +1833,20 @@
     ],
     "repository": "https://github.com/ditect-eu/ontology"
   },
+  "FWO": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "An ontology to model food donation logistics.",
+    "license": "CC-BY-4.0",
+    "name": "Food Wastage Ontology",
+    "prefix": "FWO",
+    "publications": [
+      "http://purl.org/dc/elements/1.1/"
+    ],
+    "version": "v1.0"
+  },
   "GACS": {
     "contact": {
       "email": "tom@tombaker.org",
@@ -2771,6 +2944,10 @@
     "repository": "https://github.com/Planteome/soybase-ontology",
     "version": "V10 revision 2.4"
   },
+  "SPFOOD": {
+    "name": "SmartProducts Food Domain Model",
+    "prefix": "SPFOOD"
+  },
   "SPO-FDM": {
     "contact": {
       "email": "e.motta@open.ac.uk",
@@ -2870,6 +3047,17 @@
       "https://doi.org/10.1371/journal.pone.0108985"
     ]
   },
+  "TAX": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "EUdaphobase Taxonomy Ontology for the European Soil-Biology Data Warehouse for Soil Protection",
+    "license": "https://opensource.org/licenses/MIT",
+    "name": "EUTaxO - EUdaphobase Taxonomy Ontology",
+    "prefix": "TAX",
+    "version": "v2.0.0 - Changes:\nThis major version adapts the ontology to better comply with the FAIR principles.\n- Changed URI from \"https://www.eudaphobase.eu/ontologies/taxonomy\" to \"https://w3id.org/EUTaxO\"\n- Complete ontology metadata\n- Complete labels and comments for all terms\n- Remove support to parse output excel file\n- Remove all spaces from URIs"
+  },
   "TAXRANK": {
     "contact": {
       "email": "peter.midford@gmail.com",
@@ -3039,7 +3227,7 @@
       "https://doi.org/10.1093/database/bas033"
     ],
     "repository": "https://github.com/bio-ontology-research-group/unit-ontology",
-    "version": "2023-05-25"
+    "version": "2026-01-09"
   },
   "USE": {
     "contact": {