bioregistry 0.13.14__py3-none-any.whl → 0.13.15__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1797,10 +1797,11 @@
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  "afo": {
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  "aberowl": {
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  "description": "<p><strong>Allotrope Merged Ontology Suite</strong></p> <p>The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.</p> <p>license: http://purl.allotrope.org/voc/creative-commons-attribution-license<br/> rights: http://purl.allotrope.org/voc/copyright<br/></p>",
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- "download_owl": "http://aber-owl.net/media/ontologies/AFO/42/afo.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/AFO/43/afo.owl",
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+ "homepage": "http://purl.allotrope.org",
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  "name": "Allotrope Merged Ontology Suite",
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  "prefix": "AFO",
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- "version": "REC/2025/06"
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+ "version": "REC/2025/12"
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  },
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  "bioportal": {
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  "contact": {
@@ -4122,7 +4123,7 @@
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  "apo": {
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  "aberowl": {
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  "description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi",
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- "download_owl": "http://aber-owl.net/media/ontologies/APO/64/apo.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/APO/65/apo.owl",
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  "homepage": "http://www.yeastgenome.org/",
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  "name": "Ascomycete phenotype ontology",
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  "prefix": "APO"
@@ -4228,8 +4229,8 @@
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  "name": "Ascomycete Phenotype Ontology (APO)",
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  "prefix": "apo",
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  "tracker": "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues",
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- "version": "2025-11-10",
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- "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-11-10/apo.owl"
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+ "version": "2025-12-19",
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+ "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-12-19/apo.owl"
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  },
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  "ontobee": {
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  "library": "Library",
@@ -7989,11 +7990,11 @@
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  },
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  "bervo": {
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  "aberowl": {
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- "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None",
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- "download_owl": "http://aber-owl.net/media/ontologies/BERVO/4/bervo.owl",
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+ "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None, \"An ontology of variables for earth system simulation, partially derived from the EcoSIM framework.\"",
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+ "download_owl": "http://aber-owl.net/media/ontologies/BERVO/5/bervo.owl",
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  "name": "The Biological and Environmental Research Variable Ontology",
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  "prefix": "BERVO",
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- "version": "2025-11-07"
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+ "version": "2025-12-22"
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  },
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  "bioportal": {
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  "contact": {
@@ -19758,7 +19759,7 @@
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  "cl": {
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  "aberowl": {
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  "description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.",
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- "download_owl": "http://aber-owl.net/media/ontologies/CL/117/cl.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/CL/118/cl.owl",
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  "homepage": "https://obophenotype.github.io/cell-ontology/",
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  "name": "Cell Ontology",
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  "prefix": "CL"
@@ -19817,14 +19818,15 @@
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  "name": "Alexander Diehl",
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  "orcid": "0000-0001-9990-8331"
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  },
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- "description": "The Cell Ontology (CL) is a candidate OBO Foundry ontology for the representation of cell types. First described in 2005, the CL integrates cell types from the prokaryotic, fungal, and eukaryotic organisms. As a core component of the OBO Foundry, the CL merges information contained in species-specific anatomical ontologies as well as referencing other OBO Foundry ontologies such as the Protein Ontology (PR) for uniquely expressed biomarkers and the Gene Ontology (GO) for the biological processes a cell type participates in. The CL is under continuous revision to expand representation of cell types and to better integrate with other biomedical ontologies.",
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+ "description": "Cell Ontology (CL) is an ontology designed to classify and describe cell types across different organisms. It serves as a resource for model organism and bioinformatics databases. The ontology covers a broad range of cell types in animal cells, with over 2700 cell type classes, and provides high-level cell type classes as mapping points for cell type classes in ontologies representing other species, such as the Plant Ontology or Drosophila Anatomy Ontology. Integration with other ontologies such as Uberon, GO, CHEBI, PR, and PATO enables linking cell types to anatomical structures, biological processes, and other relevant concepts.\n\nThe Cell Ontology was created in 2004 and has been a core OBO Foundry ontology since the start of the Foundry.",
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  "domains": [
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  "Annotation",
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  "cell",
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  "morphology"
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  ],
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  "homepage": "https://github.com/obophenotype/cell-ontology",
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- "license": "CC-BY-3.0",
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+ "license": "CC-BY-4.0",
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+ "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbm9IIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--d544c9b28a1342673bbc8f0346aeee1c9220104e/107354015-9375bb00-6ac5-11eb-9394-7318df343ec2.png?disposition=inline",
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  "name": "Cell Ontology",
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  "prefix": "FAIRsharing.j9y503",
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  "publications": [
@@ -34675,7 +34677,7 @@
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  "dron": {
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  "aberowl": {
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  "description": "An ontology to support comparative effectiveness researchers studying claims data.",
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- "download_owl": "http://aber-owl.net/media/ontologies/DRON/33/dron.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/DRON/34/dron.owl",
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  "homepage": "https://github.com/ufbmi/dron",
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  "name": "The Drug Ontology",
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  "prefix": "DRON"
@@ -34782,8 +34784,8 @@
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  "name": "The Drug Ontology",
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  "prefix": "dron",
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  "tracker": "https://github.com/ufbmi/dron/issues",
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- "version": "2025-11-20",
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- "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-11-20/dron.owl"
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+ "version": "2025-12-19",
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+ "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-12-19/dron.owl"
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  },
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  "ontobee": {
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  "library": "Library",
@@ -49347,12 +49349,12 @@
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  "name": "Valerie Wood",
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  "orcid": "0000-0001-6330-7526"
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  },
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- "description": "FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource (www.pombase.org). Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions.",
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+ "description": "The Fission Yeast Phenotype Ontology (FYPO) is a formal ontology of phenotypes observed in fission yeast. FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource.",
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  "domains": [
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  "GO-term enrichment data",
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  "phenotype"
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  ],
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- "homepage": "http://sourceforge.net/apps/trac/pombase/wiki/FissionYeastPhenotypeOntology",
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+ "homepage": "https://github.com/pombase/fypo",
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  "license": "CC-BY-4.0",
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  "name": "Fission Yeast Phenotype Ontology",
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  "prefix": "FAIRsharing.4vr0ys",
@@ -82546,7 +82548,7 @@
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  "mmo": {
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  "aberowl": {
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  "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
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- "download_owl": "http://aber-owl.net/media/ontologies/MMO/118/mmo.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/MMO/119/mmo.owl",
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  "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
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  "name": "Measurement method ontology",
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  "prefix": "MMO"
@@ -84503,7 +84505,7 @@
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  "mp": {
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  "aberowl": {
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  "description": "Standard terms for annotating mammalian phenotypic data.",
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- "download_owl": "http://aber-owl.net/media/ontologies/MP/134/mp.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/MP/135/mp.owl",
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  "homepage": "https://www.informatics.jax.org/vocab/mp_ontology/",
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  "name": "Mammalian Phenotype Ontology",
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  "prefix": "MP"
@@ -84670,8 +84672,8 @@
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  "name": "The Mammalian Phenotype Ontology",
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  "prefix": "mp",
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  "tracker": "https://github.com/mgijax/mammalian-phenotype-ontology/issues",
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- "version": "2025-11-19",
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- "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-11-19/mp-international.owl"
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+ "version": "2025-12-18",
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+ "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-12-18/mp-international.owl"
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  },
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  "ontobee": {
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  "library": "Library",
@@ -110081,7 +110083,7 @@
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  "pso": {
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  "aberowl": {
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  "description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.",
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- "download_owl": "http://aber-owl.net/media/ontologies/PSO/5/pso.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/PSO/6/pso.owl",
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  "homepage": "https://github.com/Planteome/plant-stress-ontology",
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  "name": "Plant Stress Ontology",
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  "prefix": "PSO"
@@ -111242,7 +111244,7 @@
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  "pw": {
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  "aberowl": {
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  "description": "A controlled vocabulary for annotating gene products to pathways.",
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- "download_owl": "http://aber-owl.net/media/ontologies/PW/97/pw.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/PW/98/pw.owl",
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  "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
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  "name": "Pathway ontology",
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  "prefix": "PW"
@@ -134939,7 +134941,8 @@
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  "fairsharing": {
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  "abbreviation": "TGMA",
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  "description": "A structured controlled vocabulary of the anatomy of mosquitoes.",
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- "homepage": "https://www.vectorbase.org/ontology-browser",
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+ "homepage": "http://purl.obolibrary.org/obo/tgma.owl",
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+ "license": "CC0-1.0",
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  "name": "Mosquito gross anatomy",
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  "prefix": "FAIRsharing.dqnfkg",
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  "publications": [
@@ -157,10 +157,11 @@
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  },
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  "AFO": {
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  "description": "<p><strong>Allotrope Merged Ontology Suite</strong></p> <p>The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.</p> <p>license: http://purl.allotrope.org/voc/creative-commons-attribution-license<br/> rights: http://purl.allotrope.org/voc/copyright<br/></p>",
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- "download_owl": "http://aber-owl.net/media/ontologies/AFO/42/afo.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/AFO/43/afo.owl",
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+ "homepage": "http://purl.allotrope.org",
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  "name": "Allotrope Merged Ontology Suite",
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  "prefix": "AFO",
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- "version": "REC/2025/06"
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+ "version": "REC/2025/12"
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  },
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  "AFPO": {
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  "description": "AfPO is a tool which enables to annotate the African individuals, and brings together knowledge accumulated about existing populations with their genetic fingerprint in a standardized format.",
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  },
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  "APO": {
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  "description": "A structured controlled vocabulary for the phenotypes of Ascomycete fungi",
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- "download_owl": "http://aber-owl.net/media/ontologies/APO/64/apo.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/APO/65/apo.owl",
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  "homepage": "http://www.yeastgenome.org/",
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  "name": "Ascomycete phenotype ontology",
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  "prefix": "APO"
@@ -653,11 +654,11 @@
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  "version": "2022-12-23"
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  },
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  "BERVO": {
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- "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None",
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- "download_owl": "http://aber-owl.net/media/ontologies/BERVO/4/bervo.owl",
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+ "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None, \"An ontology of variables for earth system simulation, partially derived from the EcoSIM framework.\"",
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+ "download_owl": "http://aber-owl.net/media/ontologies/BERVO/5/bervo.owl",
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  "name": "The Biological and Environmental Research Variable Ontology",
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  "prefix": "BERVO",
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- "version": "2025-11-07"
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+ "version": "2025-12-22"
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  },
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  "BFLC": {
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  "description": "An experimental extension to BIBFRAME 2.0 primarily for use by the Library of Congress, but with additions also applicable for other users",
@@ -1522,18 +1523,18 @@
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  },
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  "CL": {
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  "description": "The Cell Ontology is a structured controlled vocabulary for cell types in animals.",
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- "download_owl": "http://aber-owl.net/media/ontologies/CL/117/cl.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/CL/118/cl.owl",
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  "homepage": "https://obophenotype.github.io/cell-ontology/",
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  "name": "Cell Ontology",
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  "prefix": "CL"
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  },
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  "CL-SIMPLE": {
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  "description": "Cell Ontology treated as a simple existential graph of the terms defined in an ontology, An ontology of cell types.",
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- "download_owl": "http://aber-owl.net/media/ontologies/CL-SIMPLE/24/cl-simple.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/CL-SIMPLE/25/cl-simple.owl",
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  "homepage": "https://cell-ontology.github.io/",
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  "name": "Cell Ontology Simple",
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  "prefix": "CL-SIMPLE",
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- "version": "2025-11-25"
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+ "version": "2025-12-17"
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  },
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  "CLAO": {
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  "description": "CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda).",
@@ -2391,7 +2392,7 @@
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  },
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  "DRON": {
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  "description": "An ontology to support comparative effectiveness researchers studying claims data.",
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- "download_owl": "http://aber-owl.net/media/ontologies/DRON/33/dron.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/DRON/34/dron.owl",
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  "homepage": "https://github.com/ufbmi/dron",
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  "name": "The Drug Ontology",
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  "prefix": "DRON"
@@ -4294,8 +4295,7 @@
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  "HRAVS": {
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  "description": "A collection of curated and standardized values used by the HuBMAP (Human BioMolecular Atlas Program) and SenNet (Cellular Senescence Network) metadata records to ensure uniformity in the description of samples and single-cell data produced by the consortium.",
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  "name": "HuBMAP Research Attributes Value Set",
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- "prefix": "HRAVS",
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- "version": "2.14.3"
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+ "prefix": "HRAVS"
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  },
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  "HRDO": {
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  "description": "This resource was designed during a PhD in medical informatics (funded by INSERM, 2010-2012). Its components are (i) a core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and (ii) an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org). </ br> Research experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr). Current production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database. This ontology is now available on Bioportal.",
@@ -5332,11 +5332,12 @@
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  "prefix": "LEPAO"
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  },
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  "LHO": {
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- "description": "The Live Stock Health Ontology (LHO) is an extension of the DECIDE ontology. LHO follows OBO Foundry guidelines and contains information related to the health and well-being of livestock animal species such as cattle. Furthermore, it represents the explicit structured and standardized framework for specific domain knowledge and data integration of livestock species. During the development process, knowledge can be retrieved from domain experts, and after the retrieving process, the first prototype is designed for reasoning and planning of data related to cattle. Moreover, LHO contains information regarding farms Identifications, their samples, geolocation, breed, diagnostic tests, Pathogen identifications, and Pathogen results for specific bacteria such as Histophilus somni (HS), Mannheimia haemolytica (MH), Pasteurella multocida (PM), Bovine coronavirus (BCV) bacterial mycoplasma and aerobic culture results for the respiratory track in cattle. This information is represented in the form of concepts of classes, subclasses, and their relationship in the form of object and data properties.",
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- "download_owl": "http://aber-owl.net/media/ontologies/LHO/1/lho.owl",
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+ "description": "The Livestock Health Ontology (LHO) extends the DECIDE ontology specifically designed for salmon usecase. LHO contains information on the health and well-being of livestock animal species such as cattle, pigs, and poultry. Furthermore, it represents the explicit structured and standardized framework for specific domain knowledge and data integration of livestock species. During the development process, knowledge can be retrieved from domain experts, and after the retrieving process, the prototype is designed for reasoning and planning of data related to cattle, pigs, and poultry. Moreover, LHO contains information regarding farms Identifications, their samples, geolocation, breed, diagnostic tests, Pathogen identifications, and Pathogen results for specific bacteria such as Histophilus Somni (HS), Mannheimia Haemolytica (MH), Pasteurella Multocida (PM), Bovine Coronavirus (BCV) bacterial mycoplasma and aerobic culture results for the respiratory diseases in cattle. This information is represented as concepts of classes, subclasses, and their relationship in the form of object and data properties. For pigs, it includes FarmType, age, weight, and pathogens like PRRS, SwineInfluenza, and M_Hyponemoniea. In poultry, LHO incorporates FarmType, with specific pathogen names such as Infectious Bronchitis (IB), providing a concise overview of health aspects across livestock species. ), Salmon case study demonstrates the semantic modeling and integration of aquaculture-specific attributes such as hasMortality, hasActualBiomass, hasWaterType, and hasLocalAuthority. The data supports epidemiological analysis of fish health by mapping samples and measurements to environmental and production factors.",
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+ "download_owl": "http://aber-owl.net/media/ontologies/LHO/9/lho.owl",
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+ "homepage": "https://bioportal.bioontology.org/ontologies/LHO",
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  "name": "LivestockHealthOntology",
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  "prefix": "LHO",
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- "version": "1.0.0"
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+ "version": "V1.4"
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  },
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  "LICO": {
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  "description": "Liver Case Ontology (LiCO) is a case-centric ontology for liver patient cases called lico (Liver Case Ontology) that integrates several ontologies and lexicons developed for sub-disciplines of medicine such as RadLex (Radiology Lexicon), SNOMED CT (Systematized Nomenclature of Medicine, Clinical Terms), LOINC (The Logical Observation Identifier Names and Codes). It is an extension of ONLIRA (Ontology of the Liver for Radiology) that represents the liver and lesions from a radiological perspective.",
@@ -6053,7 +6054,7 @@
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  },
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  "MMO": {
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  "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
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- "download_owl": "http://aber-owl.net/media/ontologies/MMO/118/mmo.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/MMO/119/mmo.owl",
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  "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
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  "name": "Measurement method ontology",
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  "prefix": "MMO"
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  },
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  "MP": {
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  "description": "Standard terms for annotating mammalian phenotypic data.",
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- "download_owl": "http://aber-owl.net/media/ontologies/MP/134/mp.owl",
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+ "download_owl": "http://aber-owl.net/media/ontologies/MP/135/mp.owl",
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  "homepage": "https://www.informatics.jax.org/vocab/mp_ontology/",
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  "name": "Mammalian Phenotype Ontology",
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  "prefix": "MP"
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  "version": "Vision Release: 1.0.20"
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  },
7267
7268
  "OLAS": {
7268
- "description": "The Ontology of Laboratory Animal Science (OLAS) is established as a community-based biomedical ontology in the field of laboratory animal science, with the aim to ontologically represent entities and the relations among the entities related to laboratory animal science.",
7269
- "download_owl": "http://aber-owl.net/media/ontologies/OLAS/2/olas.owl",
7269
+ "description": "The Ontology of Laboratory Animal Science (OLAS) is established as a community-based biomedical ontology in the field of laboratory animal science, with the aim to ontologically represent entities and the relations among the entities related to laboratory animal science., OLAS is a biomedical ontology in the area of laboratory animal science.",
7270
+ "download_owl": "http://aber-owl.net/media/ontologies/OLAS/3/olas.owl",
7270
7271
  "name": "Ontology of Laboratory Animal Science",
7271
7272
  "prefix": "OLAS",
7272
- "version": "2025-05-08"
7273
+ "version": "2025-12-22"
7273
7274
  },
7274
7275
  "OLATDV": {
7275
7276
  "description": "Life cycle stages for Medaka",
@@ -8267,12 +8268,12 @@
8267
8268
  "prefix": "PLANP"
8268
8269
  },
8269
8270
  "PLANTSO": {
8270
- "description": "This ontology describes biotic and abiotic stresses that a plant may encounter.",
8271
- "download_owl": "http://aber-owl.net/media/ontologies/PLANTSO/3/plantso.owl",
8271
+ "description": "This ontology describes biotic and abiotic stresses that a plant may encounter., An ontology describing biotic and abiotic plant stresses.",
8272
+ "download_owl": "http://aber-owl.net/media/ontologies/PLANTSO/4/plantso.owl",
8272
8273
  "homepage": "https://github.com/Planteome/plant-stress-ontology",
8273
8274
  "name": "Plant Stress Ontology",
8274
8275
  "prefix": "PLANTSO",
8275
- "version": "2023-11-14"
8276
+ "version": "2025-12-16"
8276
8277
  },
8277
8278
  "PLIO": {
8278
8279
  "description": "The protein--ligand interaction ontology (PLIO) was developed around three main concepts, namely target, ligand and interaction, and was enriched by adding synonyms, useful annotations and references.",
@@ -8521,7 +8522,7 @@
8521
8522
  },
8522
8523
  "PSO": {
8523
8524
  "description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.",
8524
- "download_owl": "http://aber-owl.net/media/ontologies/PSO/5/pso.owl",
8525
+ "download_owl": "http://aber-owl.net/media/ontologies/PSO/6/pso.owl",
8525
8526
  "homepage": "https://github.com/Planteome/plant-stress-ontology",
8526
8527
  "name": "Plant Stress Ontology",
8527
8528
  "prefix": "PSO"
@@ -8578,7 +8579,7 @@
8578
8579
  },
8579
8580
  "PW": {
8580
8581
  "description": "A controlled vocabulary for annotating gene products to pathways.",
8581
- "download_owl": "http://aber-owl.net/media/ontologies/PW/97/pw.owl",
8582
+ "download_owl": "http://aber-owl.net/media/ontologies/PW/98/pw.owl",
8582
8583
  "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
8583
8584
  "name": "Pathway ontology",
8584
8585
  "prefix": "PW"
@@ -10326,10 +10327,10 @@
10326
10327
  },
10327
10328
  "VFB_DRIVERS": {
10328
10329
  "description": "An ontology of Drosophila melanogaster drivers and expression patterns., An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.",
10329
- "download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/196/vfb_drivers.owl",
10330
+ "download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/197/vfb_drivers.owl",
10330
10331
  "name": "vfb_drivers",
10331
10332
  "prefix": "VFB_DRIVERS",
10332
- "version": "2025-12-12"
10333
+ "version": "2025-12-22"
10333
10334
  },
10334
10335
  "VHO": {
10335
10336
  "description": "Ontology of terms used for annotating data in Virtual Fly Brain, including anatomical templates.",
@@ -333,7 +333,7 @@
333
333
  "description": "The Hornbostel-Sachs system is a classification system for musical instruments, published in 1914 by Erich Moritz von Hornbostel and Curt Sachs in the Zeitschrift fur Ethnologie under the title Systematik der Musikinstrumente Classification of musical instruments (...) The Hornbostel-Sachs system has a hierarchical structure, each category corresponds to a number, with a number being added in each detail step, so that the number of digits increases with increasing concretization Of the number, while further characters (-,:,], +) allow the notation of special meanings.",
334
334
  "homepage": "http://www.oberlin.edu/faculty/rknight/Organology/H-S-1914-German.pdf",
335
335
  "license": "CC0-1.0",
336
- "name": "Hornbostel-Sachs-systematics",
336
+ "name": "Hornbostel-Sachs Classification",
337
337
  "prefix": "1048",
338
338
  "wikidata_database": "Q496327"
339
339
  },
@@ -13640,7 +13640,7 @@
13640
13640
  "prefix": "20086"
13641
13641
  },
13642
13642
  "20087": {
13643
- "description": "- To support the policy, the Ministry of Culture decided to unify the promotion policy of the content industry following the reorganization of the government in 2008.\n- Referring to international standards prepared by the OECD (Content Media Industry Classification) and UNESCO (2009 UNESCO Framework for Cultural Statistics) and reflecting the characteristics of domestic industries\n- Includes music, film and video, animation industry, broadcasting industry, game industry, performance industry, craft and design industry, advertising industry, information service industry, intellectual property management, etc.",
13643
+ "description": "- To support the policy, the Ministry of Culture decided to unify the promotion policy of the content industry following the reorganization of the government in 2008.\n- Referring to international standards prepared by the OECD (Content Media Industry Classification) and UNESCO (2009 UNESCO Framework for Cultural Statistics) and reflecting the characteristics of domestic industries\n- It consists of the publishing, comics, music, film, game, animation, broadcasting, advertising, character, knowledge information, content solutions, and performing arts industries.\n- With the second revision in December 2024, future growth industries such as webtoons and online video services (OTT, etc.) were comprehensively included.",
13644
13644
  "homepage": "https://kssc.mods.go.kr:8443/ksscNew_web/kssc/common/ClassificationContent.do?gubun=1&strCategoryNameCode=006&categoryMenu=007&addGubun=no",
13645
13645
  "license": "http://www.nationalarchives.gov.uk/doc/open-government-licence/version/3",
13646
13646
  "name": "Contents Industry Classification",
@@ -21748,7 +21748,7 @@
21748
21748
  "description": "Scope: 62 main groups, with about 9000 items down to the fourth hierarchy level.",
21749
21749
  "homepage": "https://museumsvokabular.de/node/6",
21750
21750
  "license": "CC BY-NC-SA 3.0",
21751
- "name": "Coarse systematics",
21751
+ "name": "General Classification for Museums",
21752
21752
  "prefix": "452"
21753
21753
  },
21754
21754
  "453": {
@@ -22039,7 +22039,7 @@
22039
22039
  "description": "A typology for museums and collections: 12 basic shapes of vessels as well as a hierarchy of these types of forms, the forms are represented by extensive drawings and photographs, each of which is presented in alphabetical order with numerous concrete object names Phrases and each illustrated by a photo.",
22040
22040
  "homepage": "https://museumsvokabular.de/node/6",
22041
22041
  "license": "CC BY-NC-SA 3.0",
22042
- "name": "Vessels and forms",
22042
+ "name": "Typology of Vessels",
22043
22043
  "prefix": "491"
22044
22044
  },
22045
22045
  "492": {
@@ -22086,7 +22086,7 @@
22086
22086
  "description": "Scope: 4 main groups with subdivision up to the 5th hierarchical level.",
22087
22087
  "homepage": "https://museumsvokabular.de/node/6",
22088
22088
  "license": "CC BY-NC-SA 3.0",
22089
- "name": "Thesaurus for farm equipment, field orders - Agricultural transport - Utility tools (woodworking)",
22089
+ "name": "Thesaurus of Agricultural Tools",
22090
22090
  "prefix": "497"
22091
22091
  },
22092
22092
  "498": {
@@ -2032,7 +2032,7 @@
2032
2032
  "license": "CC-BY-4.0",
2033
2033
  "name": "Multi-scale Multi-step ontology",
2034
2034
  "prefix": "MS2O",
2035
- "version": "0.2000000000000000111"
2035
+ "version": "0.2"
2036
2036
  },
2037
2037
  "NALT": {
2038
2038
  "contact": {
@@ -3028,12 +3028,12 @@
3028
3028
  "name": "Valerie Wood",
3029
3029
  "orcid": "0000-0001-6330-7526"
3030
3030
  },
3031
- "description": "FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource (www.pombase.org). Its scope is similar to that of the Ascomycete Phenotype Ontology (APO), but FYPO includes more detailed pre-composed terms as well as computable definitions.",
3031
+ "description": "The Fission Yeast Phenotype Ontology (FYPO) is a formal ontology of phenotypes observed in fission yeast. FYPO is being developed to support the comprehensive and detailed representation of phenotypes in PomBase, the online fission yeast resource.",
3032
3032
  "domains": [
3033
3033
  "GO-term enrichment data",
3034
3034
  "phenotype"
3035
3035
  ],
3036
- "homepage": "http://sourceforge.net/apps/trac/pombase/wiki/FissionYeastPhenotypeOntology",
3036
+ "homepage": "https://github.com/pombase/fypo",
3037
3037
  "license": "CC-BY-4.0",
3038
3038
  "name": "Fission Yeast Phenotype Ontology",
3039
3039
  "publications": [
@@ -6928,7 +6928,7 @@
6928
6928
  },
6929
6929
  "FAIRsharing.TrcBD2": {
6930
6930
  "description": "Controlled vocabulary used for indexing bibliographical records dealing with chemistry in the PASCAL database (1972-2015). It is aligned with the terms of the ChEBI (Chemical Entities of Biological Interest), RXNO (name reaction ontology), MOP (molecular process ontology), REX (Physico-chemical process), FIX (Physico-chemical methods and properties), ontologies and the terms of the IUPAC Gold Book. This resource contains 9577 entries in 2 languages (English and French) grouped under 25 collections.",
6931
- "homepage": "https://loterre.istex.fr/37T/en/",
6931
+ "homepage": "https://doi.org/10.13143/lotr.4642",
6932
6932
  "license": "CC-BY-4.0",
6933
6933
  "name": "Chemistry vocabulary",
6934
6934
  "subjects": [
@@ -10413,7 +10413,8 @@
10413
10413
  "FAIRsharing.dqnfkg": {
10414
10414
  "abbreviation": "TGMA",
10415
10415
  "description": "A structured controlled vocabulary of the anatomy of mosquitoes.",
10416
- "homepage": "https://www.vectorbase.org/ontology-browser",
10416
+ "homepage": "http://purl.obolibrary.org/obo/tgma.owl",
10417
+ "license": "CC0-1.0",
10417
10418
  "name": "Mosquito gross anatomy",
10418
10419
  "publications": [
10419
10420
  {
@@ -10496,12 +10497,13 @@
10496
10497
  },
10497
10498
  "FAIRsharing.dxcjn5": {
10498
10499
  "abbreviation": "GECO",
10499
- "description": "Agroecology knowledge management is an application ontology for the description and organization of knowledge to design innovative crop systems.",
10500
+ "description": "Agroecology knowledge management is an application ontology for the description and organization of knowledge to design innovative crop systems. The GECO ontology is used to manage the knowledge base, forum and web interface of the GECO platform.",
10500
10501
  "domains": [
10501
10502
  "Cropping systems"
10502
10503
  ],
10503
- "homepage": "https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/1.4822495904463706E12",
10504
+ "homepage": "https://agroportal.lirmm.fr/ontologies/GECO",
10504
10505
  "license": "CC-BY-4.0",
10506
+ "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbnNIIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--a5a9f26b29575e1ef50fd7a18bcb745ae26735e3/layout_set_logo.png?disposition=inline",
10505
10507
  "name": "Agroecology Knowledge Management",
10506
10508
  "subjects": [
10507
10509
  "Farming Systems Research",
@@ -12816,14 +12818,15 @@
12816
12818
  "name": "Alexander Diehl",
12817
12819
  "orcid": "0000-0001-9990-8331"
12818
12820
  },
12819
- "description": "The Cell Ontology (CL) is a candidate OBO Foundry ontology for the representation of cell types. First described in 2005, the CL integrates cell types from the prokaryotic, fungal, and eukaryotic organisms. As a core component of the OBO Foundry, the CL merges information contained in species-specific anatomical ontologies as well as referencing other OBO Foundry ontologies such as the Protein Ontology (PR) for uniquely expressed biomarkers and the Gene Ontology (GO) for the biological processes a cell type participates in. The CL is under continuous revision to expand representation of cell types and to better integrate with other biomedical ontologies.",
12821
+ "description": "Cell Ontology (CL) is an ontology designed to classify and describe cell types across different organisms. It serves as a resource for model organism and bioinformatics databases. The ontology covers a broad range of cell types in animal cells, with over 2700 cell type classes, and provides high-level cell type classes as mapping points for cell type classes in ontologies representing other species, such as the Plant Ontology or Drosophila Anatomy Ontology. Integration with other ontologies such as Uberon, GO, CHEBI, PR, and PATO enables linking cell types to anatomical structures, biological processes, and other relevant concepts.\n\nThe Cell Ontology was created in 2004 and has been a core OBO Foundry ontology since the start of the Foundry.",
12820
12822
  "domains": [
12821
12823
  "Annotation",
12822
12824
  "cell",
12823
12825
  "morphology"
12824
12826
  ],
12825
12827
  "homepage": "https://github.com/obophenotype/cell-ontology",
12826
- "license": "CC-BY-3.0",
12828
+ "license": "CC-BY-4.0",
12829
+ "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBbm9IIiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--d544c9b28a1342673bbc8f0346aeee1c9220104e/107354015-9375bb00-6ac5-11eb-9394-7318df343ec2.png?disposition=inline",
12827
12830
  "name": "Cell Ontology",
12828
12831
  "publications": [
12829
12832
  {
@@ -9288,6 +9288,18 @@
9288
9288
  ],
9289
9289
  "homepage": "https://w3id.org/pep/"
9290
9290
  },
9291
+ "pghdprovo": {
9292
+ "name": "Patient Generated Health Data Provenance Ontology",
9293
+ "prefix": "pghdprovo",
9294
+ "uri_prefix": "https://w3id.org/pghdprovo#$1",
9295
+ "description": "Patient Generated Health Data (PGHD) refer to health data collected by patient or their relatives. This ontology seeks to capture information about the data, the provenance and data quality associated with PGHD shared with an EHR.",
9296
+ "modified": "2025-12-23",
9297
+ "keywords": [
9298
+ "Health",
9299
+ "Metadata"
9300
+ ],
9301
+ "homepage": "https://w3id.org/pghdprovo"
9302
+ },
9291
9303
  "pko": {
9292
9304
  "name": "Procedural Knowledge Ontology (PKO)",
9293
9305
  "prefix": "pko",
@@ -83,8 +83,8 @@
83
83
  "name": "Ascomycete Phenotype Ontology (APO)",
84
84
  "prefix": "apo",
85
85
  "tracker": "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues",
86
- "version": "2025-11-10",
87
- "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-11-10/apo.owl"
86
+ "version": "2025-12-19",
87
+ "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-12-19/apo.owl"
88
88
  },
89
89
  "apollo_sv": {
90
90
  "description": "An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.",
@@ -551,8 +551,8 @@
551
551
  "name": "The Drug Ontology",
552
552
  "prefix": "dron",
553
553
  "tracker": "https://github.com/ufbmi/dron/issues",
554
- "version": "2025-11-20",
555
- "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-11-20/dron.owl"
554
+ "version": "2025-12-19",
555
+ "version.iri": "http://purl.obolibrary.org/obo/dron/releases/2025-12-19/dron.owl"
556
556
  },
557
557
  "duo": {
558
558
  "description": "DUO is an ontology which represent data use conditions.",
@@ -1382,8 +1382,8 @@
1382
1382
  "name": "The Mammalian Phenotype Ontology",
1383
1383
  "prefix": "mp",
1384
1384
  "tracker": "https://github.com/mgijax/mammalian-phenotype-ontology/issues",
1385
- "version": "2025-11-19",
1386
- "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-11-19/mp-international.owl"
1385
+ "version": "2025-12-18",
1386
+ "version.iri": "http://purl.obolibrary.org/obo/mp/releases/2025-12-18/mp-international.owl"
1387
1387
  },
1388
1388
  "mpath": {
1389
1389
  "description": "A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes",
@@ -35513,6 +35513,17 @@
35513
35513
  "name": "OpenData@USM",
35514
35514
  "prefix": "r3d100014719"
35515
35515
  },
35516
+ "r3d100014720": {
35517
+ "description": "The CLARIAH-IATEXT repository is a specialized research data repository for Spanish linguistic resources, language technologies, and Digital Humanities applications, hosted at the Instituto Universitario de Análisis y Aplicaciones Textuales (IATEXT) of the Universidad de Las Palmas de Gran Canaria. The repository provides sustainable long-term access to diverse linguistic resources including Spanish textual corpora (over 12 million example sentences), linguistically annotated corpora, lexical databases (over 80,000 semantic-lexical relations), dictionaries (Latin collocations, Portuguese loanwords, Americanisms), natural language processing tools, and Digital Humanities applications. IATEXT has developed more than 30 Digital Humanities applications and linguistic tools including morphological analyzers, POS taggers, conjugators (14,000+ Spanish verbs), stylometric analysis tools, phrase and collocation finders, neologism detectors, and specialized search engines for parliamentary discourse, literary texts, and archaeological heritage. The repository also hosts historical and cultural databases such as ArqueoGriegos (20,000+ texts, 10,000+ images of Greek archaeological sites), ModeCan (Canarian Modernist literature), and OPORT (Portuguese loanwords in Spanish from the 16th century to present). As part of CLARIAH-ES (the Spanish node coordinating Spain's participation in the European Research Infrastructure Consortia CLARIN and DARIAH), the repository implements FAIR principles, uses CLARIN standards (CMDI metadata, Handle persistent identifiers, OAI-PMH harvesting), and provides both open and restricted access depending on licensing agreements. The designated community includes researchers, educators, students, and developers in Hispanic linguistics, computational linguistics, textual analysis, classical studies, Digital Humanities, and natural language processing for Spanish.",
35518
+ "doi": "10.17616/R31NJNUO",
35519
+ "homepage": "https://clariah.iatext.ulpgc.es/",
35520
+ "name": "CLARIAH-IATEXT",
35521
+ "prefix": "r3d100014720",
35522
+ "synonyms": [
35523
+ "CLARIAH-ES-IATEXT",
35524
+ "IATEXT-CLARIAH-ES"
35525
+ ]
35526
+ },
35516
35527
  "r3d100014722": {
35517
35528
  "description": "O2A REGISTRY effectively manages metadata for your data generating items, such as sensors, devices, gear, samplers or models in order to fulfill the first step of a FAIR data management.",
35518
35529
  "doi": "10.17616/R31NJNUQ",
@@ -35669,6 +35680,7 @@
35669
35680
  },
35670
35681
  "r3d100014749": {
35671
35682
  "description": "With the animal diseases information system (TSIS), the Friedrich-Loeffler-Institute makes up-to-date information on notifiable animal diseases online available to the public. The system allows for an interactive search on animal disease outbreaks in Germany. In addition to the animal health situation on district level, TSIS provides information on all infectious animal diseases in Germany and the respective control measures.",
35683
+ "doi": "10.17616/R31NJNVH",
35672
35684
  "homepage": "https://tsis.fli.de/cadenza/",
35673
35685
  "name": "TierSeuchenInformationsSystem",
35674
35686
  "prefix": "r3d100014749",
bioregistry/version.py CHANGED
@@ -11,7 +11,7 @@ __all__ = [
11
11
  "get_version",
12
12
  ]
13
13
 
14
- VERSION = "0.13.14"
14
+ VERSION = "0.13.15"
15
15
 
16
16
 
17
17
  def get_git_hash() -> str | None:
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: bioregistry
3
- Version: 0.13.14
3
+ Version: 0.13.15
4
4
  Summary: Integrated registry of biological databases and nomenclatures
5
5
  Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
6
6
  Author: Charles Tapley Hoyt
@@ -103,7 +103,7 @@ bioregistry/curation/suggest_author_curation.py,sha256=ecD9v6yOx5LbTAi0_wNhk9fKO
103
103
  bioregistry/curation/suggest_uniprot_providers.py,sha256=b9_LZ9hjavJ0iigGThZJuH_wEjVWCu3njJWdwvBSXj4,835
104
104
  bioregistry/data/README.md,sha256=vlWWGV0jOmcm4wu1hGUq01jZa41rDwfqIDffVs2somg,1796
105
105
  bioregistry/data/__init__.py,sha256=6oMVGRsmEoVd5caRr1Q_Zk-u3rOj382rIi2AoGMEVc8,41
106
- bioregistry/data/bioregistry.json,sha256=c5925bv_5eyzzjysk1peGw-DDh8uJ07xs6oqI9HMI-4,6395731
106
+ bioregistry/data/bioregistry.json,sha256=jhD_Y6gXKekVIzUWZrOsx5_kO_gSbJeeil5I8ZtZMTs,6396156
107
107
  bioregistry/data/collections.json,sha256=-v40j9JXvijqoMDBGFOMY-tQC_AddlfFayVI5c-U4b0,46118
108
108
  bioregistry/data/contexts.json,sha256=nUHDGrZe2oF9P5I8CeMoEYsaUfwNweTc5n7t8Hj2iJw,1436
109
109
  bioregistry/data/curated_mappings.sssom.tsv,sha256=n5l_fOSDmzV23gUQhgnefdqqJGyLwyH7YE9FGGIn3Gc,45034
@@ -123,18 +123,18 @@ bioregistry/export/warnings_export.py,sha256=LH3YsTzlJfi_KYEEvU0HzGScp0EuR0pei7p
123
123
  bioregistry/export/yaml_export.py,sha256=08W93quZWirWv5TltvgltKxWbF1nMlzrlWsVocc7T8k,1308
124
124
  bioregistry/external/__init__.py,sha256=cjcfwBprqBx_X8IJh6Vug6gGgbCf5vLcJAe4Ql_0Cuc,2989
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@@ -168,7 +168,7 @@ bioregistry/external/ncbi/processed.json,sha256=2bnV32V-vMJmpQDMTEQkdhG28A3Vvfs_
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- bioregistry/external/ols/processed.json,sha256=QEa2LdX-qYsTygRop7-x2zKOniMbaimXdFC_wFW8aM0,163908
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+ bioregistry/external/ols/processed.json,sha256=2nkQhrmJc5WBABa_VXzl_1YZ0aWdWqYJ-W76JnYRCzA,163908
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@@ -179,7 +179,7 @@ bioregistry/external/pathguide/__init__.py,sha256=Q6p01FuBU-PxSJUFrZP-fqE_ZOV_lM
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+ bioregistry/external/re3data/processed.json,sha256=LNCZhhFZg0Pcp91G3WvnFjOriKGrUfDDmcExFYGT-as,2730666
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@@ -222,8 +222,8 @@ bioregistry/utils.py,sha256=UtoHc3XzaUxv5aayJkcGyE5qjYP36SjvnVGt9sG2X-U,9207
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- bioregistry/version.py,sha256=A9dxqpWxvIKs8RCAheL9WYgBRh8NgYw5Q0zybuO8w4o,1018
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- bioregistry-0.13.14.dist-info/WHEEL,sha256=ZyFSCYkV2BrxH6-HRVRg3R9Fo7MALzer9KiPYqNxSbo,79
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- bioregistry-0.13.14.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
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- bioregistry-0.13.14.dist-info/METADATA,sha256=r7VMqjcJ9-Yl_TdWFipAJj-YPOCEkybyOalJcBi8NW4,36840
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- bioregistry-0.13.14.dist-info/RECORD,,
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+ bioregistry/version.py,sha256=cRLNPd6KRjx1SaQWO4B8upMn0zPstT2wnBhfiCxynaA,1018
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+ bioregistry-0.13.15.dist-info/WHEEL,sha256=ZyFSCYkV2BrxH6-HRVRg3R9Fo7MALzer9KiPYqNxSbo,79
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+ bioregistry-0.13.15.dist-info/entry_points.txt,sha256=zb2PWaMsW1NKdtweyHF8saPf9P4P7doqCNkwP_zxzYY,54
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+ bioregistry-0.13.15.dist-info/METADATA,sha256=BR-3LM1fct4gORmxk0ZctXxQPDSAQ-cQYWk_DZILaeM,36840
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+ bioregistry-0.13.15.dist-info/RECORD,,