bioregistry 0.13.13__py3-none-any.whl → 0.13.14__py3-none-any.whl

bioregistry/external/aberowl/processed.json

@@ -229,10 +229,10 @@
   },
   "AIDENTIFYAGE": {
     "description": "The AIdentifyAGE ontology provides a comprehensive vocabulary description for forensic age assessment using dental biological markers, promoting the transparent assessment processes in forensic odontology and age diagnostics. It formalizes expert knowledge according to IOFOS, AGFAD, ABFO, ADA and ISO standards, ensuring semantic interoperability and ethical AI integration. This ontology is a work in progress developed under the AIdentifyAGE project (FCT Grant 2024.07444.IACDC), within the national investment RE-C05-i08 – More Digital Science, measure RE-C05-i08.M04 – Support to R&D projects for advanced cybersecurity, artificial intelligence and data science systems in public administration. This work is being developed in collaboration with researchers from the University of Lisbon (Portugal), the University of Münster (Germany), and the University of Zagreb (Croatia), within the framework of the AIdentifyAGE international consortium., Base Ontology for use in AIdentifyAGE Project",
-    "download_owl": "http://aber-owl.net/media/ontologies/AIDENTIFYAGE/3/aidentifyage.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/AIDENTIFYAGE/4/aidentifyage.owl",
     "name": "AIdentifyAGE",
     "prefix": "AIDENTIFYAGE",
-    "version": "v1.0.1-beta"
+    "version": "v1.0.2-beta"
   },
   "AIDSCLIN": {
     "description": "This new ontology will cover the knowledge on AIDS and the relevant clinic activities, which imports the HIV ontology at the site https://bioportal.bioontology.org/ontologies/HIVO004 as its main or basic concept system. The new ontology is named AIDSClinic001.owl",
@@ -1578,7 +1578,7 @@
   },
   "CMO": {
     "description": "Morphological and physiological measurement records generated from clinical and model organism research and health programs.",
-    "download_owl": "http://aber-owl.net/media/ontologies/CMO/166/cmo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/CMO/167/cmo.owl",
     "homepage": "http://rgd.mcw.edu/rgdweb/ontology/search.html",
     "name": "Clinical measurement ontology",
     "prefix": "CMO"
@@ -1633,7 +1633,7 @@
   },
   "COB": {
     "description": "COB brings together key terms from a wide range of OBO projects to improve interoperability.",
-    "download_owl": "http://aber-owl.net/media/ontologies/COB/15/cob.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/COB/16/cob.owl",
     "homepage": "https://obofoundry.org/COB/",
     "name": "Core Ontology for Biology and Biomedicine",
     "prefix": "COB"
@@ -1655,11 +1655,11 @@
     "version": "0.3.1"
   },
   "COGITO": {
-    "description": "CogiTO relates Tasks from Cognitive Atlas to Hierarchical Event Descriptor (HED) tags via logical relationships (as equivalent class axioms) between concepts. In other words, terms for cognitive tasks are defined by their relation to HED tags. The purpose of this ontology is to enable querying partially annotated datasets either by a Cognitive Task or by HED tags.",
-    "download_owl": "http://aber-owl.net/media/ontologies/COGITO/2/cogito.owl",
+    "description": "CogiTO forms a semantic bridge between tasks from Cognitive Atlas and Hierarchical Event Descriptor (HED) in the form of equivalent class axioms. In other words, terms for cognitive tasks are defined by their relation to HED tags. The purpose of this ontology is to enable querying partially annotated datasets either by a Cognitive Task or by HED tags.",
+    "download_owl": "http://aber-owl.net/media/ontologies/COGITO/3/cogito.owl",
     "name": "Cognitive Task Ontology",
     "prefix": "COGITO",
-    "version": "1.0.1"
+    "version": "1.1.0"
   },
   "COGPO": {
     "description": "This ontology is used to describe the experimental conditions within cognitive/behavioral experiments, primarily in humans.",
@@ -1718,7 +1718,7 @@
   },
   "COMO": {
     "description": "Ontological terms to describe experimental data, probably useful for other environmental microbiology projects. Used in several CORAL (Contextual Ontology-based Repository Analysis Library) deployments. See more about this platfom at https://github.com/jmchandonia/CORAL",
-    "download_obo": "http://aber-owl.net/media/ontologies/COMO/7/como.obo",
+    "download_obo": "http://aber-owl.net/media/ontologies/COMO/8/como.obo",
     "name": "Context and Measurement Ontology",
     "prefix": "COMO",
     "version": "2025-08-13"
@@ -2626,7 +2626,7 @@
   },
   "EDONTOLOGY": {
     "description": "This research work contributes in the field of Information logistics and ontology development in healthcare. An ontology based model that can fix information flow problems in the ward-round process of hospital unit. The ontology based model can be used to provide relevant information to the domain users according to their needs and demands. The ontology based model projects domain users profiling and describes their roles, information demands with competencies: skills, qualifications and experiences. The ontology based model will be implemented in OWL language that can be used in an application to support ward-round activities for achieving effective patient’s treatment process. For ontology development is concerned, different ontology development methodologies have been reviewed from literature review by the author to analyze the existing problems in the ward-round. This thesis incorporates Hybrid Methodology (HM) that helps to develop ontology based model that addresses information flow problems in ward-round. The proposed ontology based model is developed in web Ontology Language (OWL) supported tool protégé 4.0.2 that can be considered as foundation to develop a software product with the help of IT practitioners and developers to fulfill medical practitioner’s demands in ward-round’s context.",
-    "download_owl": "http://aber-owl.net/media/ontologies/EDONTOLOGY/1/edontology.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/EDONTOLOGY/2/edontology.owl",
     "name": "EmergencyDerpartmentOntology",
     "prefix": "EDONTOLOGY"
   },
@@ -2967,12 +2967,11 @@
     "version": "2"
   },
   "EXMO": {
-    "description": "A core reference ontology built upon BFO about exercise medicine. This ontology contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
-    "download_owl": "http://aber-owl.net/media/ontologies/EXMO/6/exmo.owl",
+    "description": "A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chronic conditions and people living with diability to exercise.",
+    "download_owl": "http://aber-owl.net/media/ontologies/EXMO/7/exmo.owl",
     "homepage": "https://github.com/Exercise-Medicine-Ontology/EXMO",
     "name": "Exercise Medicine Ontology",
-    "prefix": "EXMO",
-    "version": "2025-06-05"
+    "prefix": "EXMO"
   },
   "EXO": {
     "description": "Vocabularies for describing exposure data to inform understanding of environmental health.",
@@ -3978,6 +3977,12 @@
     "name": "HierarchicalDMProcessOnto",
     "prefix": "HDMPONTO"
   },
+  "HDS": {
+    "description": "The humanitarian data space vocabulary describes entities and relationships relevant for humanitarian applications, specifically focusing on events related to sexual violence, human trafficking and refugee protection. The aim of this vocabulary is to report on situations and incidents that are taking place on the ground into the humanitarian data space.",
+    "download_owl": "http://aber-owl.net/media/ontologies/HDS/1/hds.owl",
+    "name": "Humanitarian Data Space",
+    "prefix": "HDS"
+  },
   "HECON": {
     "description": "Health Condition Evolution Ontology (HECON), is a formal model representation of the evolution of medical events over time.",
     "download_owl": "http://aber-owl.net/media/ontologies/HECON/1/hecon.owl",
@@ -4034,7 +4039,7 @@
   },
   "HGNC": {
     "description": "Human Genome Organisation (HUGO) Gene Nomenclature Committee at the European Bioinformatics Institute approves a gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database.",
-    "download_owl": "http://aber-owl.net/media/ontologies/HGNC/6/hgnc.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/HGNC/7/hgnc.owl",
     "homepage": "http://www.genenames.org/",
     "name": "HUGO Gene Nomenclature",
     "prefix": "HGNC",
@@ -4226,11 +4231,18 @@
   },
   "HOOM": {
     "description": "Orphanet provides phenotypic annotations of the rare diseases in the Orphanet nomenclature using the Human Phenotype Ontology (HPO). HOOM is a module that qualifies the annotation between a clinical entity and phenotypic abnormalities according to a frequency and by integrating the notion of diagnostic criterion. In ORDO a clinical entity is either a group of rare disorders, a rare disorder or a subtype of disorder. The phenomes branch of ORDO has been refactored as a logical import of HPO, and the HPO-ORDO phenotype disease-annotations have been provided in a series of triples in OBAN format in which associations, frequency and provenance are modeled. HOOM is provided as an OWL (Ontologies Web Languages) file, using OBAN, the Orphanet Rare Disease Ontology (ORDO), and HPO ontological models. HOOM provides extra possibilities for researchers, pharmaceutical companies and others wishing to co-analyse rare and common disease phenotype associations, or re-use the integrated ontologies in genomic variants repositories or match-making tools.",
-    "download_owl": "http://aber-owl.net/media/ontologies/HOOM/12/hoom.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/HOOM/13/hoom.owl",
     "homepage": "https://www.orphadata.com",
     "name": "HPO - ORDO Ontological Module",
     "prefix": "HOOM",
-    "version": "2.4"
+    "version": "2.5"
+  },
+  "HOOM_V3": {
+    "description": "Orphanet provides phenotypic annotations of the rare diseases in the Orphanet nomenclature using the Human Phenotype Ontology (HPO). HOOM is a module that qualifies the annotation between a clinical entity and phenotypic abnormalities according to a frequency and by integrating the notion of diagnostic criterion.  This new model of HOOM, used between ORDO and HPO is no more based on OBAN modelisation. It provides ORDO diseases concept annotated with HPO terms in a lightweight new dataset.",
+    "download_owl": "http://aber-owl.net/media/ontologies/HOOM_V3/1/hoom_v3.owl",
+    "name": "HOOM_New_Model",
+    "prefix": "HOOM_V3",
+    "version": "3.0"
   },
   "HORD": {
     "description": "This ontology describes the bio-psico-social state of a person of rare diseses in a holistic way. It considers several contents such as disease, psychological, social, environmental state of the person.",
@@ -4274,7 +4286,7 @@
   },
   "HRA": {
     "description": "The Human Reference Atlas (HRA) is a comprehensive, high-resolution, three-dimensional atlas of all the cells in the healthy human body. The Human Reference Atlas provides standard terminologies and data structures for describing specimens, biological structures, and spatial positions linked to existing ontologies., The graph representation of the Human Reference Atlas (HRA) dataset.",
-    "download_owl": "http://aber-owl.net/media/ontologies/HRA/9/hra.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/HRA/11/hra.owl",
     "name": "Human Reference Atlas",
     "prefix": "HRA",
     "version": "v2.3"
@@ -4282,7 +4294,8 @@
   "HRAVS": {
     "description": "A collection of curated and standardized values used by the HuBMAP (Human BioMolecular Atlas Program) and SenNet (Cellular Senescence Network) metadata records to ensure uniformity in the description of samples and single-cell data produced by the consortium.",
     "name": "HuBMAP Research Attributes Value Set",
-    "prefix": "HRAVS"
+    "prefix": "HRAVS",
+    "version": "2.14.3"
   },
   "HRDO": {
     "description": "This resource was designed during a PhD in medical informatics (funded by INSERM, 2010-2012). Its components are (i) a core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and (ii) an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org). </ br> Research experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr).  Current production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database. This ontology is now available on Bioportal.",
@@ -5829,11 +5842,11 @@
   },
   "METPO": {
     "description": "An ontology of ecophysiological traits of microbes, including tolerated and preferred growth conditions, Microbial ecophysiological trait and phenotype ontology",
-    "download_owl": "http://aber-owl.net/media/ontologies/METPO/17/metpo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/METPO/18/metpo.owl",
     "homepage": "https://github.com/berkeleybop/metpo",
     "name": "METPO",
     "prefix": "METPO",
-    "version": "2025-11-25"
+    "version": "2025-12-12"
   },
   "MF": {
     "description": "The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning.",
@@ -6040,7 +6053,7 @@
   },
   "MMO": {
     "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MMO/117/mmo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MMO/118/mmo.owl",
     "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
     "name": "Measurement method ontology",
     "prefix": "MMO"
@@ -6198,7 +6211,7 @@
   },
   "MS": {
     "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
-    "download_owl": "http://aber-owl.net/media/ontologies/MS/227/ms.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/MS/228/ms.owl",
     "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
     "name": "Mass spectrometry ontology",
     "prefix": "MS"
@@ -7721,45 +7734,45 @@
   },
   "ORDO_CS": {
     "description": "This ontology is the czech version of ORDO with definition, labels and synonyms in czech.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_CS/8/ordo_cs.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_CS/9/ordo_cs.owl",
     "name": "ORDO Czech",
     "prefix": "ORDO_CS",
-    "version": "4.7"
+    "version": "4.8"
   },
   "ORDO_DE": {
     "description": "This ontology is the german version of ORDO with definition, labels and synonyms in german.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_DE/18/ordo_de.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_DE/19/ordo_de.owl",
     "name": "ORDO GERMAN",
     "prefix": "ORDO_DE",
-    "version": "4.7"
+    "version": "4.8"
   },
   "ORDO_ES": {
     "description": "This ontology is the spanish version of ORDO with definition, labels and synonyms in spanish.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_ES/16/ordo_es.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_ES/17/ordo_es.owl",
     "name": "ORDO SPANISH",
     "prefix": "ORDO_ES",
-    "version": "4.7"
+    "version": "4.8"
   },
   "ORDO_FR": {
     "description": "This ontology is the french version of ORDO with definition, labels and synonyms in french. Cette ontologie est la version française d'ORDO avec les définitions, labels et synonymes en français.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_FR/18/ordo_fr.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_FR/19/ordo_fr.owl",
     "name": "ORDO FRENCH",
     "prefix": "ORDO_FR",
-    "version": "4.7"
+    "version": "4.8"
   },
   "ORDO_IT": {
     "description": "This ontology is the italian version of ORDO with definition, labels and synonyms in italian.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_IT/13/ordo_it.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_IT/14/ordo_it.owl",
     "name": "ORDO ITALIAN",
     "prefix": "ORDO_IT",
-    "version": "4.7"
+    "version": "4.8"
   },
   "ORDO_NL": {
     "description": "This ontology is the dutch version of ORDO with definition, labels and synonyms in dutch.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_NL/19/ordo_nl.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_NL/20/ordo_nl.owl",
     "name": "ORDO DUTCH",
     "prefix": "ORDO_NL",
-    "version": "4.7"
+    "version": "4.8"
   },
   "ORDO_OBO": {
     "description": "This is the OBO version of the Orphanet Rare Disease ontology (ORDO) which is jointly developed by Orphanet and the EBI to provide a structured vocabulary for rare diseases capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.  It derived from the Orphanet database (www.orpha.net ) , a multilingual database dedicated to rare diseases populated from literature and validated by international experts. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, SNOMED CT, UMLS, MedDRA),databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) or classifications (ICD10).",
@@ -7771,17 +7784,17 @@
   },
   "ORDO_PL": {
     "description": "This ontology is the polish version of ORDO with definition, labels and synonyms in polish.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_PL/13/ordo_pl.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_PL/14/ordo_pl.owl",
     "name": "ORDO POLISH",
     "prefix": "ORDO_PL",
-    "version": "4.7"
+    "version": "4.8"
   },
   "ORDO_PT": {
     "description": "This ontology is the portuguese version of ORDO with definition, labels and synonyms in portuguese.",
-    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_PT/9/ordo_pt.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/ORDO_PT/10/ordo_pt.owl",
     "name": "ORDO Portuguese",
     "prefix": "ORDO_PT",
-    "version": "4.7"
+    "version": "4.8"
   },
   "OREX-SAM": {
     "description": "Sample types from JSC-SAMIS Interface Control Document. Edited by S.M. Richard. These sample types are limited to those expected from the OSIRIS-REx sample return, this is not an exhaustive sample type categorization.",
@@ -8072,7 +8085,7 @@
   },
   "PECO": {
     "description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.",
-    "download_owl": "http://aber-owl.net/media/ontologies/PECO/31/peco.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/PECO/32/peco.owl",
     "homepage": "http://planteome.org/",
     "name": "Plant Experimental Conditions Ontology",
     "prefix": "PECO"
@@ -8129,7 +8142,7 @@
     "description": "This ontology seeks to capture the provenance and data quality associated with PGHD shared with an EHR. The objective is to have an ontological formal representation of the provenance and contextual data related to PGHD shared with EHR, in order to offer clinicians a means to use PGHD data for decision making and treatment support., Patient Generated Health Data (PGHD) refer to health data collected by patient or their relatives. This ontology seeks to capture information about the data, the provenance and data quality associated with PGHD shared with an EHR.",
     "download_owl": "http://aber-owl.net/media/ontologies/PGHDPROV/4/pghdprov.owl",
     "homepage": "https://w3id.org/pghdprovo",
-    "name": "Context and Provenance Based Standardized Patient Generated Health Data Shared with an Electronic Health Record",
+    "name": "PGHDProvo: Context and Provenance Based Standardized Patient Generated Health Data Shared with an Electronic Health Record",
     "prefix": "PGHDPROV",
     "version": "1.0"
   },
@@ -8698,7 +8711,7 @@
   },
   "RBO": {
     "description": "RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.",
-    "download_owl": "http://aber-owl.net/media/ontologies/RBO/38/rbo.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/RBO/39/rbo.owl",
     "homepage": "https://github.com/Radiobiology-Informatics-Consortium/RBO",
     "name": "Radiation Biology Ontology",
     "prefix": "RBO"
@@ -8738,7 +8751,7 @@
   },
   "RDA-ISSUANCE": {
     "description": "RDA vocabulary for mode of issuance of a resource (single unit, multipart monograph, etc.)",
-    "download_owl": "http://aber-owl.net/media/ontologies/RDA-ISSUANCE/10/rda-issuance.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/RDA-ISSUANCE/11/rda-issuance.owl",
     "homepage": "https://www.rdaregistry.info/termList/ModeIssue/",
     "name": "RDA Mode of Issuance",
     "prefix": "RDA-ISSUANCE",
@@ -8948,7 +8961,7 @@
   },
   "RS": {
     "description": "Ontology of rat strains",
-    "download_owl": "http://aber-owl.net/media/ontologies/RS/202/rs.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/RS/203/rs.owl",
     "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
     "name": "Rat Strain Ontology",
     "prefix": "RS"
@@ -9338,7 +9351,7 @@
   },
   "SLSO": {
     "description": "The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive and other systems that contain space life science research data.",
-    "download_owl": "http://aber-owl.net/media/ontologies/SLSO/12/slso.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/SLSO/13/slso.owl",
     "homepage": "https://github.com/nasa/LSDAO",
     "name": "Space Life Sciences Ontology",
     "prefix": "SLSO"
@@ -10313,10 +10326,10 @@
   },
   "VFB_DRIVERS": {
     "description": "An ontology of Drosophila melanogaster drivers and expression patterns., An ontology of Drosophila melanogaster drivers and expression patterns. All genetic objects are created using data taken directly from FlyBase.",
-    "download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/194/vfb_drivers.owl",
+    "download_owl": "http://aber-owl.net/media/ontologies/VFB_DRIVERS/196/vfb_drivers.owl",
     "name": "vfb_drivers",
     "prefix": "VFB_DRIVERS",
-    "version": "2025-12-08"
+    "version": "2025-12-12"
   },
   "VHO": {
     "description": "Ontology of terms used for annotating data in Virtual Fly Brain, including anatomical templates.",