bioregistry 0.13.12__py3-none-any.whl → 0.13.14__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bioregistry/data/bioregistry.json +88 -73
- bioregistry/data/collections.json +26 -5
- bioregistry/external/aberowl/processed.json +82 -63
- bioregistry/external/bartoc/processed.json +1032 -56
- bioregistry/external/bioportal/agroportal.json +40 -18
- bioregistry/external/bioportal/ecoportal.json +1 -1
- bioregistry/external/fairsharing/processed.json +16 -17
- bioregistry/external/integbio/processed.json +11 -10
- bioregistry/external/obofoundry/processed.json +1 -1
- bioregistry/external/ols/processed.json +42 -33
- bioregistry/external/re3data/processed.json +110 -8
- bioregistry/version.py +1 -1
- {bioregistry-0.13.12.dist-info → bioregistry-0.13.14.dist-info}/METADATA +1 -1
- {bioregistry-0.13.12.dist-info → bioregistry-0.13.14.dist-info}/RECORD +16 -23
- {bioregistry-0.13.12.dist-info → bioregistry-0.13.14.dist-info}/WHEEL +1 -1
- bioregistry/.DS_Store +0 -0
- bioregistry/app/.DS_Store +0 -0
- bioregistry/app/templates/.DS_Store +0 -0
- bioregistry/curation/.DS_Store +0 -0
- bioregistry/external/.DS_Store +0 -0
- bioregistry/external/miriam/.DS_Store +0 -0
- bioregistry/schema/.DS_Store +0 -0
- {bioregistry-0.13.12.dist-info → bioregistry-0.13.14.dist-info}/entry_points.txt +0 -0
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"r3d100000037": {
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"description": "The Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC) for biogeochemical dynamics is one of the National Aeronautics and Space Administration (NASA) Earth Observing System Data and Information System (EOSDIS) data centers managed by the Earth Science Data and Information System (ESDIS) Project. The ORNL DAAC archives data produced by NASA's Terrestrial Ecology Program. The DAAC provides data and information relevant to biogeochemical dynamics, ecological data, and environmental processes, critical for understanding the dynamics relating to the biological, geological, and chemical components of Earth's environment.",
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"doi": "10.17616/R3SG61",
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"homepage": "https://
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"homepage": "https://www.earthdata.nasa.gov/centers/ornl-daac/data-access-tools",
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"name": "Oak Ridge National Laboratory Distributed Active Archive Center for Biogeochemical Dynamics",
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"prefix": "r3d100000037",
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"synonyms": [
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"description": "ISRIC - World Soil Information is an independent foundation. As regular member of the ICS World Data System it is also known as World Data Centre for Soils (WDC-Soils). ISRIC was founded in 1966 through the International Soil Science Society (ISSS) and United Nations Educational, Scientific and Cultural Organization (UNESCO), with a mission to \"help to increase the availability and use of soil data, information and knowledge to enable better decision making for sustainable land management around the world\". Our work is organised according to four work streams: 1) Global soil information & standards, 2) Community of practice for soil information providers, 3) Products and services to support SLM (sustainable land management) decision making, and 4) Awareness, education and dialogues. \ndata.isric.org is our central location for searching and downloading soil data bases/maps from around the world. We support Open Data whenever possible, respecting inherited rights (licenses).",
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"description": "<<<!!!<<<duplicate, entry see: https://www.re3data.org/repository/r3d100013079>>>!!!>>> ISRIC - World Soil Information is an independent foundation. As regular member of the ICS World Data System it is also known as World Data Centre for Soils (WDC-Soils). ISRIC was founded in 1966 through the International Soil Science Society (ISSS) and United Nations Educational, Scientific and Cultural Organization (UNESCO), with a mission to \"help to increase the availability and use of soil data, information and knowledge to enable better decision making for sustainable land management around the world\". Our work is organised according to four work streams: 1) Global soil information & standards, 2) Community of practice for soil information providers, 3) Products and services to support SLM (sustainable land management) decision making, and 4) Awareness, education and dialogues. \ndata.isric.org is our central location for searching and downloading soil data bases/maps from around the world. We support Open Data whenever possible, respecting inherited rights (licenses).",
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"doi": "10.17616/R3X01J",
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"homepage": "https://www.isric.org/",
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"name": "ISRIC - World Soil Information",
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"prefix": "r3d100010468"
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"description": "This data repository allows users to publish animal tracking datasets that have been uploaded to Movebank (https://www.movebank.org/ ). Published datasets have gone through a submission and review process, and are typically associated with a written study published in an academic journal. All animal tracking data in this repository are available to the public.",
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"description": "This data repository allows users to publish animal tracking datasets that have been uploaded to Movebank (https://www.movebank.org/ ). Published datasets have gone through a submission and review process, and are typically associated with a written study published in an academic journal. All animal tracking data in this repository are available to the public.\nIn addition, analysis workflows assembled via MoveApps (https://www.moveapps.org/) can be published in a persistently citable manner.",
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"doi": "10.17616/R3M024",
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"homepage": "https://datarepository.movebank.org/home",
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"name": "Movebank Data Repository",
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"description": "Lithuanian Data Archive for Social Sciences and Humanities (LiDA) is a virtual digital infrastructure for SSH data and research resources acquisition, long-term preservation and dissemination. All the data and research resources are documented in both English and Lithuanian according to international standards. Access to the resources is provided via Dataverse repository. LiDA curates different types of resources and they are published into catalogues according to the type: Survey Data, Aggregated Data (including Historical Statistics), Encoded Data (including News Media Studies), and Textual Data. Also, LiDA holds collections of social sciences and humanities data deposited by Lithuanian science and higher education institutions and Lithuanian state institutions (Data of Other Institutions).\
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"description": "Lithuanian Data Archive for Social Sciences and Humanities (LiDA) is a virtual digital infrastructure for SSH data and research resources acquisition, long-term preservation and dissemination. All the data and research resources are documented in both English and Lithuanian according to international standards. Access to the resources is provided via Dataverse repository. LiDA curates different types of resources and they are published into catalogues according to the type: Survey Data, Aggregated Data (including Historical Statistics), Encoded Data (including News Media Studies), and Textual Data. Also, LiDA holds collections of social sciences and humanities data deposited by Lithuanian science and higher education institutions and Lithuanian state institutions (Data of Other Institutions).\nLiDA is the Lithuanian national service provider for the CESSDA ERIC.",
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"doi": "10.17616/R34S5V",
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"homepage": "https://lida.dataverse.lt",
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"license": "CC",
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"description": "The MicroScope
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"description": "The MicroScope is a web platform for the analysis of prokaryotic genomes and expert functional annotation.",
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"doi": "10.17616/R31NJMGW",
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"homepage": "https://mage.genoscope.cns.fr/microscope/
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"homepage": "https://mage.genoscope.cns.fr/microscope/",
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"name": "MicroScope",
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"synonyms": [
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"r3d100013832": {
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"description": "ROHub is a holistic solution for the storage, lifecycle management and preservation of scientific investigations, campaigns and operational processes via research objects. It makes these resources available to others, allows to publish and release them through a DOI, and allows to discover and reuse pre-existing scientific knowledge. Built entirely around the research object concept and inspired by sustainable software management principles, ROHub is the reference platform implementing natively the full research object model and paradigm, which provides the backbone to a wealth of RO-centric applications and interfaces across different scientific communities.",
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"doi": "10.17616/R31NJN60",
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"homepage": "https://
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"homepage": "https://www.rohub.org/",
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"license": "CC0",
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"name": "ROHub",
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"prefix": "r3d100013832",
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"synonyms": [
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"RO-Crate Management Platform",
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"Research Object Hub Platform"
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"r3d100014604": {
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"description": "The repository of the Herzog August Bibliothek provides access to publications of the library, research data, digital editions and other media. Publishing in the repository of the Herzog August Bibliothek follows the principles of Open Access and the FAIR data principles.",
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"doi": "10.17616/R31NJNRG",
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"homepage": "https://repo.hab.de/home",
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"name": "Repositorium der Herzog August Bibliothek",
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"r3d100014736": {
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"description": "Datarepository Unive is the institutional, free, and open repository that collects, stores, and preserves research data produced by Ca' Foscari University researchers according to the highest international standards and best practices. Datasets published in the archive have a set of metadata that ensure proper description and discoverability.",
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"doi": "10.17616/R31NJNV4",
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"homepage": "https://datarepository.unive.it/",
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"license": "CC",
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"name": "Datarepository Unive",
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"r3d100014737": {
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"description": "A data sharing platform for the MRC CoRE in Restorative Neural Dynamics, and the Brain Network Dynamics Unit. Nuffield Department of Clinical Neurosciences, University of Oxford.",
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"doi": "10.17616/R31NJNV5",
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"homepage": "https://data.mrc.ox.ac.uk/",
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"name": "Cambium",
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"prefix": "r3d100014737"
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"r3d100014738": {
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"description": "The MNXref namespace (the database for MetaNetX) is a comprehensive resource for the reconciliation and integration of metabolic information across diverse biochemical databases. MNXref integrates biochemical data from a broad range of resources, including ChEBI, KEGG, Rhea, BiGG, The SEED, and the recently added VHM. Each source is parsed, standardized, and mapped to MetaNetX identifiers through a combination of automated pipelines and manual curation.",
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"doi": "10.17616/R31NJNV6",
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"homepage": "https://www.metanetx.org",
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"license": "CC",
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"name": "MetaNetX",
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"prefix": "r3d100014738",
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"synonyms": [
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"MNXref"
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"r3d100014739": {
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"description": "The Croatian Social Science Data Archive (CROSSDA) is a national infrastructure public service whose role is to ensure the long-term preservation and dissemination of social science research data. CROSSDA is committed to providing data management support for researchers during the entire lifecycle of the project, from hypothesis development and grant preparation to data collection and data analysis. The data archive will make sure that the data are preserved and reusable in the long-term. CROSSDA is the national service provider for Croatia in the Consortium of European Social Science Data Archives CESSDA ERIC.",
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"doi": "10.17616/R31NJNV7",
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"homepage": "https://data.crossda.hr",
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"name": "Croatian Social Science Data Archive",
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"prefix": "r3d100014739",
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"synonyms": [
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"CROSSDA",
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"Hrvatski arhiv podataka za društvene znanosti"
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"description": "The International Soil Moisture Network (ISMN) provides free access to long-term, harmonised and quality-controlled in situ soil moisture observations, covering the near-surface zone down to the deep-root zone. These observations are collected from around 3.000 sites belonging to various organisations that supply ISMN with data on a voluntary basis. Other relevant hydrometeorological variables such as rainfall and temperature are also stored in the database. Services provided by ISMN have made a major contribution towards calibrating/validating and improving global satellite soil moisture products and land surface models.",
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"doi": "10.17616/R31NJNV8",
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"homepage": "https://ismn.earth",
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"name": "International Soil Moisture Network",
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"synonyms": [
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"description": "GRANTS Data is a data repository operated by the Japan Science and Technology Agency (JST). GRANTS Data is a platform that securely stores and publishes data for researchers who wish to share the findings of their publicly funded research with the public. The purpose of this service is to promote the publication and utilization of research data, and ultimately to contribute to the promotion and advancement of science and technology.\n\nData Published through GRANTS Data will automatically be assigned a DOI and will be distributed worldwide as open access* data, which means that the data can be cited, shared, reused, and otherwise used under the conditions set by the copyright holder.\n\n*Open access: Anyone can access it for free, and the scope of permitted secondary use is clearly stated.\n\nNote: Please be aware that some of the data included in GRANTS Data is not linked to any research paper, meaning that it has not been academically evaluated or verified by researchers.",
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"doi": "10.17616/R31NJNV9",
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"homepage": "https://grantsdata.jst.go.jp/",
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"name": "GRANTS Data",
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"prefix": "r3d100014741"
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"description": "Telkom University Dataverse is the institutional research data repository of Universitas Telkom (Telkom University), Indonesia. It provides Telkom University researchers, lecturers, students, and partners with a trusted platform to deposit, preserve, and share research data, software, and other reproducible research outputs across all disciplines. The repository assigns DataCite DOIs to datasets, supports standard data citation and Make Data Count metrics (views, downloads, citations), and follows FAIR data principles to promote open science, long-term stewardship, and global visibility and re-use of Telkom University research data. The service is operated by the Directorate of Information Technology Center (PuTI) of Telkom University.",
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"doi": "10.17616/R31NJNVA",
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"homepage": "https://dataverse.telkomuniversity.ac.id/",
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"license": "CC",
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"name": "Dataverse Telkom University",
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"prefix": "r3d100014742",
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"synonyms": [
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"description": "The Thünen Atlas is an interactive, web-based geoportal that provides comprehensive spatial data and maps on rural development, agriculture, forestry, and marine ecosystems in Germany. It serves as a central access point for the thematic atlases and geodata produced by the Johann Heinrich von Thünen Institute, the Federal Research Institute for Rural Areas, Forestry and Fisheries.",
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"doi": "10.17616/R31NJNVB",
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"homepage": "https://atlas.thuenen.de/#/",
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"description": "The Plant Biotechnology Information Primary Database (PlaBiPD) is a specialized genomic and proteomic resource focused on key crop and model plants. Its current implementation centers on providing integrated sequence and protein data for eight major crop species—sugar beet, grapevine, rapeseed (canola), potato, maize, barley, bread wheat, and false flax—alongside the foundational model plant Arabidopsis thaliana. PlaBiPD serves as a centralized platform for plant biotechnology research, offering foundational molecular data that supports gene discovery, functional annotation, and cross-species comparative studies aimed at crop improvement.",
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"doi": "10.17616/R31NJNVC",
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"homepage": "https://www.plabipd.de/",
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"name": "Plant Biotechnology Information Primary Database",
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"description": "The open data repository DataverseUA of the National Academy of Sciences of Ukraine is a digital platform for storing, classifying and publishing the Academy's scientific data. The aim of the project is to establish an open data repository service for research conducted by scientific institutions affiliated with the National Academy of Sciences of Ukraine. The repository is intended to provide researchers, innovators, technology companies, and the general public with an accessible and reliable environment where they can publish, discover, and reuse data.",
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"doi": "10.17616/R31NJNVE",
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"homepage": "https://opendata.nas.gov.ua/",
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"name": "Open Data Repository of the National Academy of Sciences of Ukraine",
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"prefix": "r3d100014746",
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"description": "The Repository collects scientific achievements of employees and doctoral students of the John Paul II Catholic University of Lublin. The purpose of the repository is dissemination of the scientific achievements of the John Paul II Catholic University of Lublin and promoting conducted scientific research. Depositing data is possible for users affiliated with the John Paul II Catholic University of Lublin.",
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"doi": "10.17616/R31NJNVF",
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"homepage": "https://repozytorium.kul.pl",
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"name": "Repository of the John Paul II Catholic University of Lublin",
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"prefix": "r3d100014747",
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"synonyms": [
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"Repozytorium Instytucjonalne KUL"
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"description": "With the animal diseases information system (TSIS), the Friedrich-Loeffler-Institute makes up-to-date information on notifiable animal diseases online available to the public. The system allows for an interactive search on animal disease outbreaks in Germany. In addition to the animal health situation on district level, TSIS provides information on all infectious animal diseases in Germany and the respective control measures.",
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"homepage": "https://tsis.fli.de/cadenza/",
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"name": "TierSeuchenInformationsSystem",
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Name: bioregistry
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Version: 0.13.
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Version: 0.13.14
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Summary: Integrated registry of biological databases and nomenclatures
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Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
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Author: Charles Tapley Hoyt
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