biopipen 0.28.0__py3-none-any.whl → 0.28.1__py3-none-any.whl

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Files changed (6) hide show
  1. biopipen/__init__.py +1 -1
  2. biopipen/scripts/scrna/CellsDistribution.R +2 -0
  3. {biopipen-0.28.0.dist-info → biopipen-0.28.1.dist-info}/METADATA +1 -1
  4. {biopipen-0.28.0.dist-info → biopipen-0.28.1.dist-info}/RECORD +6 -6
  5. {biopipen-0.28.0.dist-info → biopipen-0.28.1.dist-info}/WHEEL +0 -0
  6. {biopipen-0.28.0.dist-info → biopipen-0.28.1.dist-info}/entry_points.txt +0 -0
biopipen/__init__.py CHANGED
@@ -1 +1 @@
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- __version__ = "0.28.0"
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+ __version__ = "0.28.1"
biopipen/scripts/scrna/CellsDistribution.R CHANGED
@@ -360,6 +360,7 @@ do_case <- function(name, case) {
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  }
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  log_info(" Merging and saving pie charts ...")
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+ devpars = case$devpars
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  # assemble and save pie chart plots
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  res <- devpars$res %||% 100
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  # legend, cells_by names
@@ -405,6 +406,7 @@ do_case <- function(name, case) {
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  }
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  col_fun <- colorRamp2(c(0, max(hmdata, na.rm = T)), c("lightyellow", "purple"))
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+ hm_devpars <- case$hm_devpars
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  hm_res <- hm_devpars$res %||% 100
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  hm_width <- hm_devpars$width %||% (600 + 15 * length(unique(meta$seurat_clusters)) + extra_width)
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  hm_height <- hm_devpars$height %||% (450 + 15 * cells_rows + extra_height)
{biopipen-0.28.0.dist-info → biopipen-0.28.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: biopipen
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- Version: 0.28.0
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+ Version: 0.28.1
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  Summary: Bioinformatics processes/pipelines that can be run from `pipen run`
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  License: MIT
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  Author: pwwang
{biopipen-0.28.0.dist-info → biopipen-0.28.1.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- biopipen/__init__.py,sha256=MRQGtOXBhcDKeeNOL0LiB-cllo6kfd8_KGJOvaDp0XQ,23
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+ biopipen/__init__.py,sha256=ZRQKbgDaGz_yuLk-cUKuk6ZBKCSRKZC8nQd041NRNXk,23
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  biopipen/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  biopipen/core/config.py,sha256=edK5xnDhM8j27srDzsxubi934NMrglLoKrdcC8qsEPk,1069
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  biopipen/core/config.toml,sha256=20RCI30Peee1EQdfb_UbV3Hf74XUPndJnYZlUThytsw,1781
@@ -124,7 +124,7 @@ biopipen/scripts/scrna/CellTypeAnnotation-hitype.R,sha256=6_DBAlLKcHqaMyWGZWvTd4
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  biopipen/scripts/scrna/CellTypeAnnotation-sccatch.R,sha256=HO1ta0VWdBY1SuUNDqeb_Rp3UrbcqJgGpglegvMUGpw,1435
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  biopipen/scripts/scrna/CellTypeAnnotation-sctype.R,sha256=1nKRtzhVoJ9y0yMg1sgI6u7czsrk2cN0FvNUCZo8l-o,3878
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  biopipen/scripts/scrna/CellTypeAnnotation.R,sha256=OwLM_G4D7TG4HhIJjQxgIQM92X86lsWp9MVyXTTkLSc,618
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- biopipen/scripts/scrna/CellsDistribution.R,sha256=isDr5-EWvOeWwVZdjOSsdX3QUpEaDvQFulIYawqFaQc,18854
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+ biopipen/scripts/scrna/CellsDistribution.R,sha256=lCobUWmNv97PF0HwwRbn9CGAJ1HGRuzlJe6CvlUijf0,18915
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  biopipen/scripts/scrna/DimPlots.R,sha256=-mXOTMnpPxvR30XLjwcohFfFx7xTqWKKiICwJiD6yEo,1554
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  biopipen/scripts/scrna/ExprImputation-alra.R,sha256=w3W1txJcdWg52-SETY2Z0lO7maDNfiMjBYIGN587YW0,843
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  biopipen/scripts/scrna/ExprImputation-rmagic.R,sha256=jYIfqZpnvjKJkvItLnemPVtUApHBYQi1_L8rHVbEe1M,735
@@ -240,7 +240,7 @@ biopipen/utils/reference.py,sha256=6bPSwQa-GiDfr7xLR9a5T64Ey40y24yn3QfQ5wDFZkU,4
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  biopipen/utils/rnaseq.R,sha256=Ro2B2dG-Z2oVaT5tkwp9RHBz4dp_RF-JcizlM5GYXFs,1298
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  biopipen/utils/single_cell.R,sha256=pJjYP8bIZpNAtTQ32rOXhZxaM1Y-6D-xUcK3pql9tbk,4316
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  biopipen/utils/vcf.py,sha256=ajXs0M_QghEctlvUlSRjWQIABVF02wPdYd-0LP4mIsU,9377
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- biopipen-0.28.0.dist-info/METADATA,sha256=XfDkn9H4G1HMFTSWg5w_OY4kMbbCI_FWQicqaK3Z3nY,882
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- biopipen-0.28.0.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- biopipen-0.28.0.dist-info/entry_points.txt,sha256=wu70aoBcv1UahVbB_5237MY-9M9_mzqmWjDD-oi3yz0,621
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- biopipen-0.28.0.dist-info/RECORD,,
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+ biopipen-0.28.1.dist-info/METADATA,sha256=UPLio_HdqVCyeNe2VCcUTZXz1CGakrQFH7_Dbb9qnHQ,882
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+ biopipen-0.28.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ biopipen-0.28.1.dist-info/entry_points.txt,sha256=wu70aoBcv1UahVbB_5237MY-9M9_mzqmWjDD-oi3yz0,621
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+ biopipen-0.28.1.dist-info/RECORD,,