biopipen 0.25.4__py3-none-any.whl → 0.26.1__py3-none-any.whl

{biopipen-0.25.4.dist-info → biopipen-0.26.1.dist-info}/RECORD

@@ -1,7 +1,7 @@
-biopipen/__init__.py,sha256=ecF8WlGgNuYRj3QRbMJQBVjdpKbSFwlW9naM4NJEUOE,23
+biopipen/__init__.py,sha256=u0eTmljUU0kO8AAW-e1ESQ49mK2SuhpCy7eCliBLlDU,23
 biopipen/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biopipen/core/config.py,sha256=edK5xnDhM8j27srDzsxubi934NMrglLoKrdcC8qsEPk,1069
-biopipen/core/config.toml,sha256=Rn7Cta7WsMtmQkKGC4h9d5dU_STaIVBgR8UliiGgL6o,1757
+biopipen/core/config.toml,sha256=20RCI30Peee1EQdfb_UbV3Hf74XUPndJnYZlUThytsw,1781
 biopipen/core/defaults.py,sha256=yPeehPLk_OYCf71IgRVCWuQRxLAMixDF81Ium0HtPKI,344
 biopipen/core/filters.py,sha256=HLrjXGsvvjRtTWIAmg_f4IMymWaRD769HlDwsCTh170,12424
 biopipen/core/proc.py,sha256=60lUP3PcUAaKbDETo9N5PEIoeOYrLgcSmuytmrhcx8g,912
@@ -20,9 +20,11 @@ biopipen/ns/gene.py,sha256=Q5FzRByfnRITXRNRZR65ApG09FRyiihRC3TcIXxufzE,2228
 biopipen/ns/gsea.py,sha256=EsNRAPYsagaV2KYgr4Jv0KCnZGqayM209v4yOGGTIOI,7423
 biopipen/ns/misc.py,sha256=fzn0pXvdghMkQhu-e3MMapPNMyO6IAJbtTzVU3GbFa0,3246
 biopipen/ns/plot.py,sha256=yguxmErUOH-hOM10JfuI_sXw2p49XF8yGR_gXfbd5yQ,4066
-biopipen/ns/rnaseq.py,sha256=l4vFeRasGhkexopGTM_VfSyIFewOxg-9L5niFzhWUNA,565
-biopipen/ns/scrna.py,sha256=3LstMM08l2Q0DQyqkpe0n2JbBBzPJgzsls_uOlJAERE,98960
+biopipen/ns/rnaseq.py,sha256=bKAa6friFWof4yDTWZQahm1MS-lrdetO1GqDKdfxXYc,7708
+biopipen/ns/scrna.py,sha256=Tm4FMMBfHnK99hcrCjIvigYtiIxOSXEemgNmi3qwE8M,99855
 biopipen/ns/scrna_metabolic_landscape.py,sha256=9s1NvH3aMaNDXyfwy9TdzGcSP_lIW4JqhLgknNZcIKE,28313
+biopipen/ns/snp.py,sha256=upGltsjjl09PWcRVdW6D5WpAQ3oWm1KwxQ026wsQwWc,2583
+biopipen/ns/stats.py,sha256=yJ6C1CXF84T7DDs9mgufqUOr89Rl6kybE5ji8Vnx6cw,13693
 biopipen/ns/tcgamaf.py,sha256=AFbUJIxiMSvsVY3RcHgjRFuMnNh2DG3Mr5slLNEyz6o,1455
 biopipen/ns/tcr.py,sha256=Pl6flJsgzcjExc3x9Eg_uiNkQprqmUTqKtmImM66zNY,84411
 biopipen/ns/vcf.py,sha256=cdkKroii0_nl_bSP2cnO09qESUAhHqu6btOiTSKS79Y,15314
@@ -110,7 +112,10 @@ biopipen/scripts/misc/Config2File.py,sha256=NUio0uOEuZtUBpuByDSItYu9Kwu5mosb4pdP
 biopipen/scripts/misc/Str2File.py,sha256=99oQNxChxChNJ9vmD77b48cu-r_P_heSpx7A5wi3qTE,212
 biopipen/scripts/plot/Heatmap.R,sha256=4v_oRME8ZiwczIlBIp-OP_YPWLAvBKzbHiwNBCZ0Xog,1982
 biopipen/scripts/plot/VennDiagram.R,sha256=GVc-kyHqnXrbXZvy-evcxI1XGtlLSChBiVnMjPywNMA,731
-biopipen/scripts/rnaseq/UnitConversion.R,sha256=9etSQ6ivtlrgSg4mLjViZAl8nUtCxfEROxXvFCpN9sg,1928
+biopipen/scripts/rnaseq/Simulation-ESCO.R,sha256=68cEHDdJclX8P8Q7ey9yBOfK09M_kxlL6zgYXsEL2Rs,6378
+biopipen/scripts/rnaseq/Simulation-RUVcorr.R,sha256=6C6Ke5RLF0fC2V9WQPoFEdqoDabCnhslZBIyB6zhIxc,1155
+biopipen/scripts/rnaseq/Simulation.R,sha256=PNEDUwEEOMGwgNyx5VPDAbzSLS74gqAxKenv5Uw_8zo,850
+biopipen/scripts/rnaseq/UnitConversion.R,sha256=rk-9-j4E-VSETU5hIgEYxCVL7wOM5fHwRBCOj93oKCU,11355
 biopipen/scripts/scrna/AnnData2Seurat.R,sha256=16ASr8B7B7tj7hZpwL31v6GASfh8wcBwIDHG-wi5Jec,2534
 biopipen/scripts/scrna/CellTypeAnnotation-celltypist.R,sha256=Hzqt-I41ThiSGPzqrg5ma4IQbCDnM1ztfTscPqthdfM,9009
 biopipen/scripts/scrna/CellTypeAnnotation-direct.R,sha256=ST7hJo6IY3-lfj1ymFCxxTH4cAsu8CVTcOKpELBeyuo,1855
@@ -118,16 +123,16 @@ biopipen/scripts/scrna/CellTypeAnnotation-hitype.R,sha256=6_DBAlLKcHqaMyWGZWvTd4
 biopipen/scripts/scrna/CellTypeAnnotation-sccatch.R,sha256=1ejye0hs-EOwzzdP9gFWSLPcF6dOAA6VmNKXEjmS11E,1654
 biopipen/scripts/scrna/CellTypeAnnotation-sctype.R,sha256=1nKRtzhVoJ9y0yMg1sgI6u7czsrk2cN0FvNUCZo8l-o,3878
 biopipen/scripts/scrna/CellTypeAnnotation.R,sha256=OwLM_G4D7TG4HhIJjQxgIQM92X86lsWp9MVyXTTkLSc,618
-biopipen/scripts/scrna/CellsDistribution.R,sha256=zoTE0vO5qcMY1PxwGlNi9eY1F50n1XMc8o0AUzdDN68,16768
+biopipen/scripts/scrna/CellsDistribution.R,sha256=CXdL7yLaoKdkKdgckR6IbUXlVIQQ25oc3CTCq673CEU,19952
 biopipen/scripts/scrna/DimPlots.R,sha256=-mXOTMnpPxvR30XLjwcohFfFx7xTqWKKiICwJiD6yEo,1554
 biopipen/scripts/scrna/ExprImpution-alra.R,sha256=w3W1txJcdWg52-SETY2Z0lO7maDNfiMjBYIGN587YW0,843
 biopipen/scripts/scrna/ExprImpution-rmagic.R,sha256=jYIfqZpnvjKJkvItLnemPVtUApHBYQi1_L8rHVbEe1M,735
 biopipen/scripts/scrna/ExprImpution-scimpute.R,sha256=mg40qCUW7-nP5oHPvARq7dmtoahM0GRFWXQpum0BXVk,1082
 biopipen/scripts/scrna/ExprImpution.R,sha256=7768ezrr59xUZDXq8lO9jj2XhnkSsx-xxBmOD9_DO7c,313
-biopipen/scripts/scrna/MarkersFinder.R,sha256=IMYqZ63eGURKrjUn2pCtDCd47WUbYXD7RRc8vu6ymdI,26829
+biopipen/scripts/scrna/MarkersFinder.R,sha256=FNMrwErK9xC2Q_OpWldP1HGEosGc1cinrU1zmyotiLg,27302
 biopipen/scripts/scrna/MetaMarkers.R,sha256=CyKRW81WFMv00W5mHbloaYrsq7B1niAFFtypf9Meezo,12411
 biopipen/scripts/scrna/ModuleScoreCalculator.R,sha256=JSHd-_-KiFqW8avCGxgU4T-C5BtDr2u0kwIvEu2lFIg,4188
-biopipen/scripts/scrna/RadarPlots.R,sha256=0A4rX0ngx3S0TDx-HMgLNIa6w5551vPvpTQZuZSb7J0,14757
+biopipen/scripts/scrna/RadarPlots.R,sha256=yMcYweiaKgu_mAWUvp4-OqyCIqdPrEXSwTzM53a_CH0,14862
 biopipen/scripts/scrna/SCImpute.R,sha256=dSJOHhmJ3x_72LBRXT72dbCti5oiB85CJ-OjWtqONbk,2958
 biopipen/scripts/scrna/ScFGSEA.R,sha256=POyFFDmtDteVw0wN3ADkh85JhQvMPw3diW_Dg9NXMVM,7487
 biopipen/scripts/scrna/Seurat2AnnData.R,sha256=qz4u-B5J3GMwttubnNnByJXreziFbrP5Mak0L0q7eG0,1557
@@ -135,7 +140,7 @@ biopipen/scripts/scrna/SeuratClusterStats-dimplots.R,sha256=pZKv1SnSNEGXDeE0_2VY
 biopipen/scripts/scrna/SeuratClusterStats-features.R,sha256=SaKTJloP1fttRXZQeb2ApX0ej7al13wOoEYkthSk13k,15489
 biopipen/scripts/scrna/SeuratClusterStats-hists.R,sha256=YhuD-GePjJPSkR0iLRgV_hiGHD_bnOIKp-LB6GCwquo,5037
 biopipen/scripts/scrna/SeuratClusterStats-ngenes.R,sha256=GVKIXFNS_syCuSN8oxoBkjxxAeI5LdSxh-qLVkUsbDA,2146
-biopipen/scripts/scrna/SeuratClusterStats-stats.R,sha256=CE9989SaO75_KYEEVqivEbUoTcUOtiTkRGWLNtWzxI8,6450
+biopipen/scripts/scrna/SeuratClusterStats-stats.R,sha256=b5oXWb2GKt8nQxEXTc8Duv8rSx4UEwaO4OaEdyCBiF0,7590
 biopipen/scripts/scrna/SeuratClusterStats.R,sha256=ouWoj7Q644uG3MUlT23AES8f74g38-jPtPhINSvoUas,1267
 biopipen/scripts/scrna/SeuratClustering.R,sha256=kAvQq3RV86_KSv9NlUtUeQrPKkbhSsnv6Q4DoiTu8M0,6403
 biopipen/scripts/scrna/SeuratFilter.R,sha256=BrYK0MLdaTtQvInMaQsmOt7oH_hlks0M1zykkJtg2lM,509
@@ -147,7 +152,7 @@ biopipen/scripts/scrna/SeuratSplit.R,sha256=vdK11V39_Uo_NaOh76QWCtxObGaEr5Ynxqq0
 biopipen/scripts/scrna/SeuratSubClustering.R,sha256=L1SwKhNNKvsQGrcj0ZjScW9BLuvdO2pg7U48Ospsot8,6096
 biopipen/scripts/scrna/SeuratSubset.R,sha256=yVA11NVE2FSSw-DhxQcJRapns0tNNHdyDYi5epO6SKM,1776
 biopipen/scripts/scrna/SeuratTo10X.R,sha256=T2nJBTwOe12AIKC2FZsMSv6xx3s-67CYZokpz5wshqY,2679
-biopipen/scripts/scrna/TopExpressingGenes.R,sha256=J6tM54HStWkguUwFoIHRo_EAtCUKOuCBEfInzRfDYMQ,7703
+biopipen/scripts/scrna/TopExpressingGenes.R,sha256=1OTCBeHooAKkByDBSBNG5F2icrPuznDW92EgG3YazTw,8563
 biopipen/scripts/scrna/Write10X.R,sha256=OMhXvJwvaH-aWsMpijKrvXQVabc1qUu5ZEwiLAhkDeY,285
 biopipen/scripts/scrna/celltypist-wrapper.py,sha256=f5M8f4rU5nC7l17RS0YVmUPpLLz4D6PIcgWtA77UExM,1722
 biopipen/scripts/scrna/sctype.R,sha256=NaUJkABwF5G1UVm1CCtcMbwLSj94Mo24mbYCKFqo1Bw,6524
@@ -155,12 +160,17 @@ biopipen/scripts/scrna_metabolic_landscape/MetabolicFeatures.R,sha256=b77yG5FeRs
 biopipen/scripts/scrna_metabolic_landscape/MetabolicFeaturesIntraSubset.R,sha256=ic8Fy8QqYDGh_izmvZVJ3KL66podg_CSF5ITL3FZsvo,5196
 biopipen/scripts/scrna_metabolic_landscape/MetabolicPathwayActivity.R,sha256=95DLX1Rz0tobOuDZ8V9YdGgO0KiNthhccoeeOK21tno,16216
 biopipen/scripts/scrna_metabolic_landscape/MetabolicPathwayHeterogeneity.R,sha256=rQ9iwGh9FNRZlJJzM4QItdyXmebfzLAq05ZAjb1kGUw,9831
+biopipen/scripts/snp/PlinkSimulation.py,sha256=h5ZArLGi45ZNrhuW1ExyJ7-4BQ7tbucmwn63BktN5pU,2667
+biopipen/scripts/stats/ChowTest.R,sha256=4p7NULmfOZSfeBSQ04els0h3cXOK5yeCJJ4-gEBPOGk,3617
+biopipen/scripts/stats/DiffCoexpr.R,sha256=rSxNf_nhyviubGknyHFkyIY0PlXIRfqYUDbZIoTrk0c,4513
+biopipen/scripts/stats/LiquidAssoc.R,sha256=s-XJbFoOfH4eWSkxbbOSHZ1x16lY0Sdod_V1KvSkM8k,3727
+biopipen/scripts/stats/MetaPvalue.R,sha256=c26lYC4rxQ3D7vRvsXJ4_M-QIYTDTV8AEjXrag2_srU,3957
 biopipen/scripts/tcgamaf/Maf2Vcf.py,sha256=Cxh7fiSNCxWDTfIJqZDOOnaSrw-85S_fH2U-PWY03hc,704
 biopipen/scripts/tcgamaf/MafAddChr.py,sha256=V10HMisl12O3ZfXuRmFNdy5p-3mr43WCvy0GHxSpwfA,494
 biopipen/scripts/tcgamaf/maf2vcf.pl,sha256=hJKcH-NbgWK6fmK7f3qex7ozJJl-PqCNPXqpwfcHwJg,22707
 biopipen/scripts/tcr/Attach2Seurat.R,sha256=C91TAh1cLSxWkdFPf84pbxlpTYMuWq_rduG4eiIkXZI,1345
 biopipen/scripts/tcr/CDR3AAPhyschem.R,sha256=-0BS6cdt5GfQJphA3HlDgGjWr4XFF-7INLJyMBHQNAc,16628
-biopipen/scripts/tcr/CloneResidency.R,sha256=yE1Why0spX557D9aIQummoxXIdXBC6jt3YB5kIL1jt0,21647
+biopipen/scripts/tcr/CloneResidency.R,sha256=AVIsBIR1zEuaQ9ozb0dbe9BSYi-RMV2-83xKPZ6DVMU,20347
 biopipen/scripts/tcr/CloneSizeQQPlot.R,sha256=5FPfWQjxTsv59KSDQaDWj3C95zPQMngKG7qOf95NEzI,4527
 biopipen/scripts/tcr/GIANA/GIANA.py,sha256=0qLhgCWxT8K-4JvORA03CzBPTT5pd4Di5B_DgrHXbFA,47198
 biopipen/scripts/tcr/GIANA/GIANA4.py,sha256=Z7Q3cUr1Pvmy4CFADN0P7i9g1-HbzWROMqk5HvL_F1Q,45762
@@ -219,15 +229,15 @@ biopipen/utils/gene.R,sha256=BzAwlLA8hO12vF-3t6IwEuTEeLa_jBll4zm_5qe3qoE,1243
 biopipen/utils/gene.py,sha256=qE_BqTayrJWxRdniffhcz6OhZcw9GUoOrj2EtFWH9Gw,2246
 biopipen/utils/gsea.R,sha256=UMQOlWGstQTOBScvy1wIzrB7I3CE28Xo2v1sy4lmJ-M,7549
 biopipen/utils/io.R,sha256=jIYdqdn0iRWfQYAZa5CjXi3fikqmYvPPLIXhobRe8sw,537
-biopipen/utils/misc.R,sha256=sB2cM-sJn9H90FAZD89uNUYPU5k_6BT8d_nG33fI7d4,5520
-biopipen/utils/misc.py,sha256=Pmh3CBiKJ3vC_RqorfOfRAvTVKXrGDJT8DMLfYbTivs,3055
+biopipen/utils/misc.R,sha256=yo6mp6lBiKCPpSuAmfETNJSQJDduTbEXa_56jmqs_VE,6805
+biopipen/utils/misc.py,sha256=BpqPVgp_IlsUZow5P4mEtbPMjhO_vEb5atrF7iJ_xhU,3509
 biopipen/utils/mutate_helpers.R,sha256=Bqy6Oi4rrPEPJw0Jq32bVAwwBfZv7JJL9jFcK5x-cek,17649
 biopipen/utils/plot.R,sha256=pzl37PomNeUZPxohHZ2w93j3Fc4T0Qrc62FF-9MTKdw,4417
 biopipen/utils/reference.py,sha256=6bPSwQa-GiDfr7xLR9a5T64Ey40y24yn3QfQ5wDFZkU,4420
 biopipen/utils/rnaseq.R,sha256=Ro2B2dG-Z2oVaT5tkwp9RHBz4dp_RF-JcizlM5GYXFs,1298
 biopipen/utils/single_cell.R,sha256=pJjYP8bIZpNAtTQ32rOXhZxaM1Y-6D-xUcK3pql9tbk,4316
 biopipen/utils/vcf.py,sha256=ajXs0M_QghEctlvUlSRjWQIABVF02wPdYd-0LP4mIsU,9377
-biopipen-0.25.4.dist-info/METADATA,sha256=gM8icW3uqM9GhZn0A1RNHSopuBteumXJMAKkmnRgUoQ,932
-biopipen-0.25.4.dist-info/WHEEL,sha256=FMvqSimYX_P7y0a7UY-_Mc83r5zkBZsCYPm7Lr0Bsq4,88
-biopipen-0.25.4.dist-info/entry_points.txt,sha256=O7K7PHoJi-4tERYpqmryuTvrFNEsptMpqliZzB2oBQQ,577
-biopipen-0.25.4.dist-info/RECORD,,
+biopipen-0.26.1.dist-info/METADATA,sha256=jpb9Z7AVsQ7LN-Zhza6QDrD1yDPWBuIcOwrajRsJV5M,878
+biopipen-0.26.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+biopipen-0.26.1.dist-info/entry_points.txt,sha256=wu70aoBcv1UahVbB_5237MY-9M9_mzqmWjDD-oi3yz0,621
+biopipen-0.26.1.dist-info/RECORD,,

{biopipen-0.25.4.dist-info → biopipen-0.26.1.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 1.8.1
+Generator: poetry-core 1.9.0
 Root-Is-Purelib: true
 Tag: py3-none-any

{biopipen-0.25.4.dist-info → biopipen-0.26.1.dist-info}/entry_points.txt

@@ -15,6 +15,8 @@ plot=biopipen.ns.plot
 rnaseq=biopipen.ns.rnaseq
 scrna=biopipen.ns.scrna
 scrna_metabolic_landscape=biopipen.ns.scrna_metabolic_landscape
+snp=biopipen.ns.snp
+stats=biopipen.ns.stats
 tcgamaf=biopipen.ns.tcgamaf
 tcr=biopipen.ns.tcr
 vcf=biopipen.ns.vcf