biopipen 0.17.7__py3-none-any.whl → 0.18.0__py3-none-any.whl

{biopipen-0.17.7.dist-info → biopipen-0.18.0.dist-info}/RECORD

@@ -1,9 +1,9 @@
-biopipen/__init__.py,sha256=_9A_jQb7KUl9K8At8l-nfzMi9odK4IQSyRft9V3xoYs,23
+biopipen/__init__.py,sha256=0EHw4xygmgkGSyfwNfEoMlQyN0uHxjHtlSFF79s6120,23
 biopipen/core/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biopipen/core/config.py,sha256=edK5xnDhM8j27srDzsxubi934NMrglLoKrdcC8qsEPk,1069
 biopipen/core/config.toml,sha256=JALO2S7TfmV3gIRPJ0cLTFWncPXXheQJS3vYQlyX6wQ,1600
 biopipen/core/defaults.py,sha256=yPeehPLk_OYCf71IgRVCWuQRxLAMixDF81Ium0HtPKI,344
-biopipen/core/filters.py,sha256=22VAjUjmkXuVxTD2FgznwKwefVtjhDYUrXR2qsUNa9w,6671
+biopipen/core/filters.py,sha256=NSeEElvRujLZQTV1e4zmQXZb2RjaAvGt1AaRH_xUOTA,7061
 biopipen/core/proc.py,sha256=7TsjBM7EEtMMB-w4jbxV_CSRY8J970gM8320Ga1YeHU,717
 biopipen/core/testing.py,sha256=5vR15kkCjfXM7Bx0HBzabNLtDLAEX4uU94TskCkPni8,1447
 biopipen/ns/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -13,17 +13,17 @@ biopipen/ns/bed.py,sha256=Gu6ctc56NkkuSHoXjJ_fgWXXTCJMtedrtZ8GUX2WEo8,5380
 biopipen/ns/cnv.py,sha256=vq6dZfEOyuVuqg3nP6FQtNmQ-JocpBJMX9IYlZ0OPD0,6803
 biopipen/ns/cnvkit.py,sha256=5mA2Q8-YDs4g1HoxtpB_NWnyZYwEThNr3s3wlubLQrQ,31130
 biopipen/ns/cnvkit_pipeline.py,sha256=_9OusUwS4avpuaqa4TOra74-7pcMbhczTNPrxctrNyM,36769
-biopipen/ns/delim.py,sha256=1rQnqpZDuwD43HWfsXpazxGKkBHsOjv--v2tgDSeQCg,5673
+biopipen/ns/delim.py,sha256=_PTQqxVJUp2t2g6-jPUnjf9C6T11YdYHHkaF3EYJBw0,5683
 biopipen/ns/gene.py,sha256=Q5FzRByfnRITXRNRZR65ApG09FRyiihRC3TcIXxufzE,2228
 biopipen/ns/gsea.py,sha256=EsNRAPYsagaV2KYgr4Jv0KCnZGqayM209v4yOGGTIOI,7423
 biopipen/ns/misc.py,sha256=fzn0pXvdghMkQhu-e3MMapPNMyO6IAJbtTzVU3GbFa0,3246
 biopipen/ns/plot.py,sha256=yguxmErUOH-hOM10JfuI_sXw2p49XF8yGR_gXfbd5yQ,4066
 biopipen/ns/rnaseq.py,sha256=l4vFeRasGhkexopGTM_VfSyIFewOxg-9L5niFzhWUNA,565
-biopipen/ns/scrna.py,sha256=NXI9ljfClE2aTibYXGCQcKi4CHSdFXt7rbu0ASyuhbg,74979
+biopipen/ns/scrna.py,sha256=EIvjkMRtVakruO5X3eoD4j4pWV5TGwf-E48Kav5WB1Q,79087
 biopipen/ns/scrna_basic.py,sha256=os00_hhEaCVRspSCnHvOoItS11OU_aFKgMqbocVyZQU,8538
 biopipen/ns/scrna_metabolic_landscape.py,sha256=AW36EOH-5AJNcMK4j7_LPgJYpyXASH3jj99g_m15SaA,26056
 biopipen/ns/tcgamaf.py,sha256=AFbUJIxiMSvsVY3RcHgjRFuMnNh2DG3Mr5slLNEyz6o,1455
-biopipen/ns/tcr.py,sha256=5H3geCyRxKIfmSoqT0ISUQSiKh2MJgUjDK-rIWYgOWg,59703
+biopipen/ns/tcr.py,sha256=Z02tWLZDSiXMfh9SCKbbwATUN7OcrCB3fOgepAagasY,59922
 biopipen/ns/vcf.py,sha256=cdkKroii0_nl_bSP2cnO09qESUAhHqu6btOiTSKS79Y,15314
 biopipen/ns/web.py,sha256=3zucrDo-IVsSnIvlw-deoScuxqWa6OMTm8Vo-R4E44Q,2224
 biopipen/reports/bam/CNAClinic.svelte,sha256=D4IxQcgDCPQZMbXog-aZP5iJEQTK2N4i0C60e_iXyfs,213
@@ -41,11 +41,11 @@ biopipen/reports/gsea/GSEA.svelte,sha256=lYHf8h8RLx3i-jNCEGu_LM-dbYm9ZJDzyAEadsZ
 biopipen/reports/scrna/CellsDistribution.svelte,sha256=C2Zua-3sXRESttx00cJkQFTUDN5mGbSY0WRyJ5Aoi1Y,1198
 biopipen/reports/scrna/DimPlots.svelte,sha256=ZLbtN0ioevRyEky4jb_DkDGAcpy_jAhaHfFym5ELEPM,479
 biopipen/reports/scrna/GeneExpressionInvistigation.svelte,sha256=nsWHX5VaRSIbUYSFKYcBZaeJIxuUlk5UItA7WPK4clY,793
-biopipen/reports/scrna/MarkersFinder.svelte,sha256=OnakwMU9ZD2tH7nJgG4XxOljAjacJHGj9UBPTHWv754,2770
+biopipen/reports/scrna/MarkersFinder.svelte,sha256=5VKGCNmH0EVfDTINCG6Klr8dxpHgl662EYsS4RNiaKI,3856
 biopipen/reports/scrna/MetaMarkers.svelte,sha256=mPdwV9sTXn6fLTZWqTvFNSn7fdIs-7w4HSerV69o6C0,3709
 biopipen/reports/scrna/RadarPlots.svelte,sha256=QnqQ5J-27KR5apcKmP10fDkoAyO9n3Q2LPEWqDuRxdw,1075
 biopipen/reports/scrna/ScFGSEA.svelte,sha256=uLOlfillgvLbDCO7CzIKZ3HzwO4fZcCcJOpzJRnKwm4,1268
-biopipen/reports/scrna/SeuratClusterStats.svelte,sha256=-EaVQF6A2iRs7FQ6C01AAhdEEnoWMRIWAg-BdO_ukdo,4959
+biopipen/reports/scrna/SeuratClusterStats.svelte,sha256=_vRaffYxpPh_Zdw1O-U7zKkZTUHtrugyhuT7REYaWEk,3433
 biopipen/reports/scrna/SeuratMap2Ref.svelte,sha256=SYuoKJR1PuBf9c7WvUXXjmokVo-JxFLqZqiu9kTtLuY,542
 biopipen/reports/scrna/SeuratPreparing.svelte,sha256=PHeL_prMFTZ-tddhUHG3O6dGUL2ygNNnMEAeHzZVq-k,1182
 biopipen/reports/scrna/TopExpressingGenes.svelte,sha256=lVvlKwMep4woYTiTPTTvlSPOycjxUb44aiEqNzj9u18,1952
@@ -94,7 +94,7 @@ biopipen/scripts/cnvkit/CNVkitScatter.py,sha256=7DhTiXPHEHbdXn0VFcDOR-wTP6sks08N
 biopipen/scripts/cnvkit/CNVkitSegment.py,sha256=q5iGAjY6-yIehPcJpi3hX6EuGre0YgWTPkG_d5LEV48,1629
 biopipen/scripts/cnvkit/guess_baits.py,sha256=7OCMtSMHIJWWZv9qEYVXnB0N4hU_JaGEesKdkr6tvJc,10586
 biopipen/scripts/delim/RowsBinder.R,sha256=yp960u7Ui_jFCL8WDvODa-0vhJvyLo64ll35PzXYUbI,1444
-biopipen/scripts/delim/SampleInfo.R,sha256=e4LSg7_KlNGTZzmb7YFqgSo23uT_uezbllVvNHlRfIs,5096
+biopipen/scripts/delim/SampleInfo.R,sha256=abO6oI2zBzJdKfyL4CvRrQQWkdLD0NYCnhnhYqrosmc,5253
 biopipen/scripts/gene/GeneNameConversion.py,sha256=2RveardTsLv2K1XSj3G0ERYLiln9bcR74bjkRdKcChc,1880
 biopipen/scripts/gsea/Enrichr.R,sha256=tr4vInlVIeiGXumh22ARuTQmy0-Qq869RiX7d7ERqCg,661
 biopipen/scripts/gsea/FGSEA.R,sha256=RLqDgrqnYEacHfzEEuZ3d29lxNqWehigOnGuu248SRg,1483
@@ -117,14 +117,17 @@ biopipen/scripts/scrna/ExprImpution-rmagic.R,sha256=yYnkyVfqIaNynsbaZZLGS6DrAJ_X
 biopipen/scripts/scrna/ExprImpution-scimpute.R,sha256=mg40qCUW7-nP5oHPvARq7dmtoahM0GRFWXQpum0BXVk,1082
 biopipen/scripts/scrna/ExprImpution.R,sha256=7768ezrr59xUZDXq8lO9jj2XhnkSsx-xxBmOD9_DO7c,313
 biopipen/scripts/scrna/GeneExpressionInvistigation.R,sha256=FI5MWic3xRml2DN7ONcyT7pbceOnL30Zd4nBHRZRFNQ,3800
-biopipen/scripts/scrna/MarkersFinder.R,sha256=E99kJOoDV0PvDZgbST3y3Sny3behrWr3GFnMGSAUFF8,8027
+biopipen/scripts/scrna/MarkersFinder.R,sha256=eMLIpJxrdCUNDGmdLL90rNSfKyn6hwxmBvUC4A1S_SE,10089
 biopipen/scripts/scrna/MetaMarkers.R,sha256=d0fPCkD12F9GUes6UkxvMe0e9YqWuV64uRWAcvzJe8s,8331
 biopipen/scripts/scrna/ModuleScoreCalculator.R,sha256=0mLGoTvJRpTbCnmuYbYKqZnP3ZdJQkTn6getJddBKRs,2495
 biopipen/scripts/scrna/RadarPlots.R,sha256=5J1G4c1qfjyI2OTbyDj-XHV8mmh8KWkkuLbO-BNURao,6955
 biopipen/scripts/scrna/SCImpute.R,sha256=dSJOHhmJ3x_72LBRXT72dbCti5oiB85CJ-OjWtqONbk,2958
 biopipen/scripts/scrna/ScFGSEA.R,sha256=puEc9HLzPuHg8DFY6b0Kie3Iyra0H1D4h0r4VX7iIis,4953
-biopipen/scripts/scrna/SeuratClusterStats.R,sha256=HogtO4sVYtH22qMWaQhUDMGBWC3Eo7QU03YGmRzRog0,15740
-biopipen/scripts/scrna/SeuratClustering.R,sha256=H0ix8fJQ-G5i8KLSSK3RJWcKzRCcaHcXRp8LEoXtSiY,6700
+biopipen/scripts/scrna/SeuratClusterStats-dimplots.R,sha256=DKSs32gv1fxpdeCOrrys5n_FnEKEaQniEoKDhrXTvKE,1197
+biopipen/scripts/scrna/SeuratClusterStats-features.R,sha256=vsDys4zTeMfkCYlUnxGt8kO0MuMPozCWu5FjORizY7Y,7438
+biopipen/scripts/scrna/SeuratClusterStats-stats.R,sha256=IKEGW5mjXqpIKbfSLmHm4az2BJqxzM8-Bklnw3ZqhK8,3636
+biopipen/scripts/scrna/SeuratClusterStats.R,sha256=Xst0PIyqrk9QT76hjHW8tK0BZeUHiSoHzGg4l86_i3M,556
+biopipen/scripts/scrna/SeuratClustering.R,sha256=Q_QGWPay3mdn3sy42Ym6kDNnowqctOfcXBSwVUIM-OM,7476
 biopipen/scripts/scrna/SeuratFilter.R,sha256=BrYK0MLdaTtQvInMaQsmOt7oH_hlks0M1zykkJtg2lM,509
 biopipen/scripts/scrna/SeuratLoading.R,sha256=ekWKnHIqtQb3kHVQiVymAHXXqiUxs6KKefjZKjaykmk,900
 biopipen/scripts/scrna/SeuratMap2Ref.R,sha256=TkDSDc5do6BOtkAq3fS5HpjyqWUwsu8YqRC5in62oz8,3750
@@ -167,15 +170,15 @@ biopipen/scripts/tcr/ImmunarchSplitIdents.R,sha256=FGCeGV0uSmFU91lKkldUAeV4A2m3h
 biopipen/scripts/tcr/SampleDiversity.R,sha256=jQ1OU3b8vswD8tZhLt3fkcqJKrl2bhQX0giHM2rXz3Y,2643
 biopipen/scripts/tcr/TCRClustering.R,sha256=yfIiCMQuywjoJnAXwRJjlJsoYIA8swUMKIt_AsGvHQY,8566
 biopipen/scripts/tcr/TCRClusteringStats.R,sha256=_NoMX_c22WIYZlVXkJjs7c3YsmEqhWJJl6cXMFa_Srw,8297
-biopipen/scripts/tcr/TESSA.R,sha256=EN9YcUS6gNEOhcBhWOI0I4Wh9O2SAf66-kv2n0imeOg,6151
+biopipen/scripts/tcr/TESSA.R,sha256=9WuLf3Di4PKb6zclPy7FW1EBITB2He-1vTMRy2vhQI8,6317
 biopipen/scripts/tcr/TESSA_source/Atchley_factors.csv,sha256=SumqDOqP67P54uM7Cuc5_O_rySTWcGo7eX3psMSPX9s,763
-biopipen/scripts/tcr/TESSA_source/BriseisEncoder.py,sha256=Ys6a5LzPi-0jIT22zo2u_YMxavtoJl7OKZlmWJix0C0,6824
+biopipen/scripts/tcr/TESSA_source/BriseisEncoder.py,sha256=z4_Q_6StymffuUGGjHP1-B3aTsXtamKao5Q1-Kg9has,6831
 biopipen/scripts/tcr/TESSA_source/MCMC_control.R,sha256=93Nnz0IG8KfFnVscZDvmBp1qccZoSoG_jIVpOWBQLHE,2911
 biopipen/scripts/tcr/TESSA_source/TrainedEncoder.h5,sha256=U-z4jcmeDXnJQwgmXoIjeJvCj_R8f5wHsesDKYBaF98,457824
 biopipen/scripts/tcr/TESSA_source/fixed_b.csv,sha256=tJJ2hUt0kJLZOxTH_vo_vd_CSbHa_W_JGa3jcOWrczY,570
 biopipen/scripts/tcr/TESSA_source/initialization.R,sha256=TYPciAvWrrOVByfxdsqouEk8k9vgB45oW1jQFfUGLjM,3900
 biopipen/scripts/tcr/TESSA_source/post_analysis.R,sha256=6RX7gdqd1N7lQVfwJBgjfEZEwi1Q4r15mpAthsLSSJ8,5090
-biopipen/scripts/tcr/TESSA_source/real_data.R,sha256=XCmFXdz5GyVLSUtNBcPLXqTqTVbwb5gSG8JQsMsxxt4,2427
+biopipen/scripts/tcr/TESSA_source/real_data.R,sha256=tg3BbiTpRVQWBRZStnzkC2jI1PCmxUA0fjWK09J6grw,2448
 biopipen/scripts/tcr/TESSA_source/update.R,sha256=kVrf6zgIkhhiQ2O55XGmxm_DGBKSpcShFgkyPNQIet0,6661
 biopipen/scripts/tcr/TESSA_source/utility.R,sha256=6qbkMV7yp4bgQe718QiASQUAgOE2euiLgAXOeSqrvHQ,374
 biopipen/scripts/tcr/VJUsage.R,sha256=LjHEbAHW3WriCYiM9-T6Esd4jc6pnoiSxBKTN_YA490,437
@@ -207,7 +210,7 @@ biopipen/utils/plot.R,sha256=pzl37PomNeUZPxohHZ2w93j3Fc4T0Qrc62FF-9MTKdw,4417
 biopipen/utils/reference.py,sha256=6bPSwQa-GiDfr7xLR9a5T64Ey40y24yn3QfQ5wDFZkU,4420
 biopipen/utils/rnaseq.R,sha256=Ro2B2dG-Z2oVaT5tkwp9RHBz4dp_RF-JcizlM5GYXFs,1298
 biopipen/utils/vcf.py,sha256=ajXs0M_QghEctlvUlSRjWQIABVF02wPdYd-0LP4mIsU,9377
-biopipen-0.17.7.dist-info/METADATA,sha256=Umc5NJOutMYToxZbYXmvE8BqUXs_PwD9oPC6e55oCEg,863
-biopipen-0.17.7.dist-info/WHEEL,sha256=d2fvjOD7sXsVzChCqf0Ty0JbHKBaLYwDbGQDwQTnJ50,88
-biopipen-0.17.7.dist-info/entry_points.txt,sha256=sfI6oDEEuMvAg0KNujE9uu-c29y7IwQQA1_A2sUjPhc,527
-biopipen-0.17.7.dist-info/RECORD,,
+biopipen-0.18.0.dist-info/METADATA,sha256=KctoN8cx0TfZIBSFiXSDNvB64FkCD14Z_07zamsbG1w,869
+biopipen-0.18.0.dist-info/WHEEL,sha256=d2fvjOD7sXsVzChCqf0Ty0JbHKBaLYwDbGQDwQTnJ50,88
+biopipen-0.18.0.dist-info/entry_points.txt,sha256=sfI6oDEEuMvAg0KNujE9uu-c29y7IwQQA1_A2sUjPhc,527
+biopipen-0.18.0.dist-info/RECORD,,