biomechzoo 0.4.4__py3-none-any.whl → 0.4.5__py3-none-any.whl

__init__.py

@@ -0,0 +1,33 @@
+"""
+BiomechZoo: A Python toolbox for processing and analyzing human movement data.
+
+This package provides functions for converting, processing, analyzing,
+and visualizing biomechanical data (e.g., motion capture, EMG, kinetics).
+
+Example:
+    from biomechzoo import BiomechZoo
+    from biomechzoo.conversion import c3d2zoo
+
+    zoo = BiomechZoo()
+    zoo.conversion.c3d2zoo('path/to/data')
+"""
+
+# Import main class or entry point
+from .biomechzo import BiomechZoo
+
+# Import commonly used submodules
+from . import conversion
+from . import processing
+from . import plotting
+from . import utils
+
+# Define what gets exposed with "from biomechzoo import *"
+__all__ = [
+    "BiomechZoo",
+    "conversion",
+    "processing",
+    "plotting",
+    "utils",
+]
+
+__version__ = "0.4.4"

biomechzoo/biomechzoo.py

@@ -20,7 +20,6 @@ from biomechzoo.biomech_ops.normalize_data import normalize_data
 from biomechzoo.biomech_ops.phase_angle_data import phase_angle_data
 from biomechzoo.biomech_ops.continuous_relative_phase_data import continuous_relative_phase_data
 
-
 class BiomechZoo:
     def __init__(self, in_folder, inplace=False, subfolders=None, name_contains=None, verbose=0):
         self.verbose = verbose

biomechzoo/processing/explodechannel_data.py

@@ -1,3 +1,5 @@
+import copy
+
 def explodechannel_data(data, channels=None):
     """ Explodes 3D channels (n x 3 arrays) into separate X, Y, Z channels.
 
@@ -10,8 +12,7 @@ def explodechannel_data(data, channels=None):
         data_new (dict): Modified zoo dictionary with exploded channels.
     """
 
-    data_new = data.copy()
-
+    data_new = copy.deepcopy(data)
     # Find default channels if none provided
     if channels is None:
         channels = []

biomechzoo/processing/partition_data.py

@@ -1,5 +1,6 @@
 from biomechzoo.utils.findfield import findfield
 import warnings
+import copy
 
 
 def partition_data(data, evt_start, evt_end):
@@ -9,7 +10,7 @@ def partition_data(data, evt_start, evt_end):
     e1, _ = findfield(data, evt_start)
     e2, _ = findfield(data, evt_end)
 
-    data_new = data.copy()
+    data_new = copy.deepcopy(data)
     for ch_name, ch_data in data_new.items():
         if ch_name != 'zoosystem':
             try:
@@ -29,6 +30,7 @@ def partition_data(data, evt_start, evt_end):
                     continue  # do not change outlier markers
                 else:
                     new_frame = original_frame - e1[0] + 1
+                    print(new_frame)
                     data_new[ch_name]['event'][event_name][0] = new_frame
 
     return data_new

{biomechzoo-0.4.4.dist-info → biomechzoo-0.4.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: biomechzoo
-Version: 0.4.4
+Version: 0.4.5
 Summary: Python implementation of the biomechZoo toolbox
 License-Expression: MIT
 Project-URL: Homepage, https://github.com/mcgillmotionlab/biomechzoo
@@ -31,3 +31,15 @@ This is a development version of the biomechzoo toolbox for python.
 - We use Numpy 2.2.6 for compatibility with https://pypi.org/project/numba/
 
 See also http://www.github.com/mcgillmotionlab/biomechzoo or http://www.biomechzoo.com for more information
+
+## Developer notes
+
+### Installing a dev environment
+conda create -n biomechzoo-dev python=3.11
+conda activate biomechzoo-dev
+pip install -e ".[dev]"
+
+### import issues
+if using PyCharm: 
+- Right-click on src/.
+- Select Mark Directory as → Sources Root.

{biomechzoo-0.4.4.dist-info → biomechzoo-0.4.5.dist-info}/RECORD

@@ -1,6 +1,7 @@
+__init__.py,sha256=Uy3ykqw4l_lZKiUWSUFPRZpkZajYUfZLBaQLVhKzxdI,772
 biomechzoo/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biomechzoo/__main__.py,sha256=hSMHN1Rxn2367fSGTLHoOQ4_pocZw0IWI7HFxl-74oY,88
-biomechzoo/biomechzoo.py,sha256=h-XNCm5eFDYUNYLWveQ_16hJDHCi3cCJmKMzsqasYBE,20783
+biomechzoo/biomechzoo.py,sha256=6YpqhUaMH76d9zjNAsnOvyU5zppbCMD1t72FIzA8VyI,20782
 biomechzoo/biomech_ops/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biomechzoo/biomech_ops/continuous_relative_phase_data.py,sha256=RePbt6zyOI1iv74CWhxSrunIokTFYVfFmFnoW51781E,1300
 biomechzoo/biomech_ops/continuous_relative_phase_line.py,sha256=Fa1LFRuPlmGPLQLvln6HVnJy3zMSm9z5YeooHmTu0lc,1365
@@ -24,8 +25,8 @@ biomechzoo/processing/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3h
 biomechzoo/processing/add_channel_data.py,sha256=U1xLLBSnyJeeDWzgmHSxOz1hyguzuuDXxQCQ8IFoZkw,1955
 biomechzoo/processing/addchannel_data.py,sha256=rmnnlMRVkoMlQCR-nRg1jjh-hzMDt37Sx9fAmocrpqA,1953
 biomechzoo/processing/addevent_data.py,sha256=DyTfvjOWZIlsWfnT6XDwvsU1jOzSDf4HhLa1TaKIhwI,1325
-biomechzoo/processing/explodechannel_data.py,sha256=t4gC2ZQD4baECexj0hQYDzOnXV5GHb-z068mtZzh0DQ,1470
-biomechzoo/processing/partition_data.py,sha256=LU7eCyl66wrQXoH3MNbVF0q0IMitEP9AMqeF6qG1J4k,1703
+biomechzoo/processing/explodechannel_data.py,sha256=AC2BOEw1tXcgJ1WuYWSE-yToS-q9XGdgkOHS4D3iUFo,1490
+biomechzoo/processing/partition_data.py,sha256=8miAL8kzOSJtg6j6WetAxRv8whJD8gtDVR9FEpj6mo8,1760
 biomechzoo/processing/removechannel_data.py,sha256=ndZcbWJRDvd7drlahGaq8MseT-rsxiu7pgdMtA1cTlo,1218
 biomechzoo/processing/renamechannel_data.py,sha256=5lEnWJknAwnJYXDlwO6cFe7C8ct5o42tTHW0Y4GeIL4,2210
 biomechzoo/processing/renameevent_data.py,sha256=9w7C_fQOsQ8XbdTr_hrg_iQe51oDczq2Rj7yJLyYG0M,2215
@@ -40,9 +41,9 @@ biomechzoo/utils/split_trial.py,sha256=Fumz_ZukNBNtPauUhCge5EAHkg05dYDhA1_njQw0l
 biomechzoo/utils/zload.py,sha256=FPT6_-gwaOOqOckjgPRfnKEVKMsmNVIcenmQZF2KOvo,1535
 biomechzoo/utils/zplot.py,sha256=WVA8aCy1Pqy_bo_HXab9AmW-cBd8J8MPX2LAOd6dznU,1512
 biomechzoo/utils/zsave.py,sha256=wnRNuDxQc8bwCji4UrfoGjYrSZmka4eaDxQ5rMa78pE,1759
-biomechzoo-0.4.4.dist-info/licenses/LICENSE,sha256=Fsz62nrgRORre3A1wNXUDISaHoostodMvocRPDdXc9w,1076
-biomechzoo-0.4.4.dist-info/METADATA,sha256=Xk4_QLJcL54KpN98fvrm8l7y5iFy8agshCJ2WqmYDbc,1296
-biomechzoo-0.4.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-biomechzoo-0.4.4.dist-info/entry_points.txt,sha256=VdryUUiwwvx0WZxrgmMrsyfe5Z1jtyaxdXOi0zWHOqk,41
-biomechzoo-0.4.4.dist-info/top_level.txt,sha256=W148kdiK-6L0Nohbw8UALkAzHJvJLAhFDRykuva2WjY,11
-biomechzoo-0.4.4.dist-info/RECORD,,
+biomechzoo-0.4.5.dist-info/licenses/LICENSE,sha256=Fsz62nrgRORre3A1wNXUDISaHoostodMvocRPDdXc9w,1076
+biomechzoo-0.4.5.dist-info/METADATA,sha256=tKqy3v7eordmf6uD0bCDHqXtoLBGHAu8rDrIjqhxJWs,1553
+biomechzoo-0.4.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+biomechzoo-0.4.5.dist-info/entry_points.txt,sha256=VdryUUiwwvx0WZxrgmMrsyfe5Z1jtyaxdXOi0zWHOqk,41
+biomechzoo-0.4.5.dist-info/top_level.txt,sha256=nJEtuEZ9UPoN3EOR-BJ6myevEu7B5quWsWhaM_YeQpw,20
+biomechzoo-0.4.5.dist-info/RECORD,,

{biomechzoo-0.4.4.dist-info → biomechzoo-0.4.5.dist-info}/top_level.txt

@@ -1 +1,2 @@
+__init__
 biomechzoo