bioguider 0.2.28__py3-none-any.whl → 0.2.29__py3-none-any.whl

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Files changed (6) hide show
  1. bioguider/generation/output_manager.py +3 -3
  2. bioguider/managers/generation_manager.py +3 -3
  3. {bioguider-0.2.28.dist-info → bioguider-0.2.29.dist-info}/METADATA +1 -1
  4. {bioguider-0.2.28.dist-info → bioguider-0.2.29.dist-info}/RECORD +6 -6
  5. {bioguider-0.2.28.dist-info → bioguider-0.2.29.dist-info}/LICENSE +0 -0
  6. {bioguider-0.2.28.dist-info → bioguider-0.2.29.dist-info}/WHEEL +0 -0
bioguider/generation/output_manager.py CHANGED
@@ -3,14 +3,14 @@ from __future__ import annotations
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  import os
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  import json
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  from datetime import datetime
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- from typing import Dict, List, Tuple
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+ from typing import Dict, List, Optional, Tuple
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  from .models import OutputArtifact, GenerationManifest, PlannedEdit
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  class OutputManager:
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- def __init__(self, base_outputs_dir: str = "outputs"):
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- self.base_outputs_dir = base_outputs_dir
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+ def __init__(self, base_outputs_dir: Optional[str] = None):
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+ self.base_outputs_dir = base_outputs_dir or "outputs"
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  def prepare_output_dir(self, repo_url_or_name: str) -> str:
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  repo_name = self._extract_repo_name(repo_url_or_name)
bioguider/managers/generation_manager.py CHANGED
@@ -2,7 +2,7 @@ from __future__ import annotations
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  import os
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  from pathlib import Path
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- from typing import Tuple, Dict, List
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+ from typing import Optional, Tuple, Dict, List
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  from bioguider.generation import (
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  EvaluationReportLoader,
@@ -20,7 +20,7 @@ from bioguider.utils.file_utils import parse_repo_url
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  class DocumentationGenerationManager:
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- def __init__(self, llm, step_callback):
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+ def __init__(self, llm, step_callback, output_dir: Optional[str] = None):
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  self.llm = llm
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  self.step_callback = step_callback
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  self.repo_url_or_path: str | None = None
@@ -30,7 +30,7 @@ class DocumentationGenerationManager:
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  self.style_analyzer = StyleAnalyzer()
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  self.planner = ChangePlanner()
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  self.renderer = DocumentRenderer()
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- self.output = OutputManager()
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+ self.output = OutputManager(base_outputs_dir=output_dir)
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  self.llm_gen = LLMContentGenerator(llm)
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  self.llm_cleaner = LLMCleaner(llm)
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{bioguider-0.2.28.dist-info → bioguider-0.2.29.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: bioguider
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- Version: 0.2.28
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+ Version: 0.2.29
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  Summary: An AI-Powered package to help biomedical developers to generate clear documentation
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  License: MIT
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  Author: Cankun Wang
{bioguider-0.2.28.dist-info → bioguider-0.2.29.dist-info}/RECORD RENAMED
@@ -49,14 +49,14 @@ bioguider/generation/llm_cleaner.py,sha256=aMxc3j6IH_9mCfBjxY1bn0bAUtUkUoHjumobz
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  bioguider/generation/llm_content_generator.py,sha256=1pfXYRykvGgLGu9YJH-DhvaMzb7hy_EyvHQ8XojUBQ8,3684
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  bioguider/generation/llm_injector.py,sha256=bVxP6Asv2em4MBOB5yFsS14AuaeT7NLKQQMcsEqXjPY,17352
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  bioguider/generation/models.py,sha256=q9sF32Iu5VAa59UbheqPWEZn4bYeGGUVzpW24NJR_SM,2518
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- bioguider/generation/output_manager.py,sha256=V0eXYG9iaWxUjU44eLLX5mQcfjOz5tAKa_X0rkTc5Aw,1935
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+ bioguider/generation/output_manager.py,sha256=uwLyavND4kXOHlsXB0Berab3y8u6bhaEmQOQLl7wDAM,1963
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  bioguider/generation/repo_reader.py,sha256=ivTURU61fR8er4ev7gSpOxER3FJv2d9GAx_X5JoVTvQ,1177
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  bioguider/generation/report_loader.py,sha256=m6_zcXsm5X6cFUB0ypVo1rjwjQzPAwwg83tc4H0X_eA,5598
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  bioguider/generation/style_analyzer.py,sha256=Vn9FAK1qJBNLolLC1tz362k4UBaPl107BlvkQc8pV2I,983
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  bioguider/generation/suggestion_extractor.py,sha256=tfkyWtdbAo-maLCF_wqwBXyh93yjulvDY17FuvTnTjk,7611
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  bioguider/generation/test_metrics.py,sha256=ACXmSZc2L_UkkmC5h2s4tG44MXW1d-hClFwPCD5_BFI,7505
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  bioguider/managers/evaluation_manager.py,sha256=EoZ8V4rmx16zk1J3N9cNjeo0aCa7i32fLEQ3b2UolEQ,5917
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- bioguider/managers/generation_manager.py,sha256=p2c569lams5-_WYHdynBpVap8gKtQPxQEcZOrPllNuY,9523
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+ bioguider/managers/generation_manager.py,sha256=94Fe-0q37t7QIP2lkdmEiTjb8-hbiz9XX9h8Gi6BkSU,9594
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  bioguider/managers/generation_test_manager.py,sha256=3mOBzQVpsLo_LpSspJcofn3CNtvgagS1DMr9Zuwkzq4,5307
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  bioguider/rag/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  bioguider/rag/config.py,sha256=5g4IqTzgyfZfax9Af9CTkXShgItPOt4_9TEMSekCPik,4602
@@ -74,7 +74,7 @@ bioguider/utils/pyphen_utils.py,sha256=cdZc3qphkvMDeL5NiZ8Xou13M_uVNP7ifJ-FwxO-0
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  bioguider/utils/python_file_handler.py,sha256=BERiE2RHxpu3gAzv26jr8ZQetkrtnMZOv9SjpQ7WIdg,2650
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  bioguider/utils/r_file_handler.py,sha256=8HpFaYKP8N1nItwr9tOx49m99pcLSt8EUtTNTJ7xNoE,19564
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  bioguider/utils/utils.py,sha256=h8OhCjzLpHkb3ndnjRBUOBHD7csbHdEVNXf75SRN8Zc,4413
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- bioguider-0.2.28.dist-info/LICENSE,sha256=qzkvZcKwwA5DuSuhXMOm2LcO6BdEr4V7jwFZVL2-jL4,1065
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- bioguider-0.2.28.dist-info/METADATA,sha256=dprh6Ds8aqSlDhLUp7oeMlFB4rMa_7CP40JBecB4NRA,1962
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- bioguider-0.2.28.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- bioguider-0.2.28.dist-info/RECORD,,
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+ bioguider-0.2.29.dist-info/LICENSE,sha256=qzkvZcKwwA5DuSuhXMOm2LcO6BdEr4V7jwFZVL2-jL4,1065
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+ bioguider-0.2.29.dist-info/METADATA,sha256=O4IRhR2hhEuFMeWOYCSeQvyKHZUdWdGosGssGN0gohs,1962
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+ bioguider-0.2.29.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ bioguider-0.2.29.dist-info/RECORD,,