bioguider 0.2.27__py3-none-any.whl → 0.2.28__py3-none-any.whl

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Files changed (5) hide show
  1. bioguider/generation/report_loader.py +16 -7
  2. {bioguider-0.2.27.dist-info → bioguider-0.2.28.dist-info}/METADATA +1 -1
  3. {bioguider-0.2.27.dist-info → bioguider-0.2.28.dist-info}/RECORD +5 -5
  4. {bioguider-0.2.27.dist-info → bioguider-0.2.28.dist-info}/LICENSE +0 -0
  5. {bioguider-0.2.27.dist-info → bioguider-0.2.28.dist-info}/WHEEL +0 -0
bioguider/generation/report_loader.py CHANGED
@@ -123,14 +123,17 @@ class EvaluationReportLoader:
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  normalized = normalize(raw)
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  # Special handling for stringified evaluation fields
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- inst_eval = normalized.get("installation_evaluation")
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+ inst_eval = normalized.get("installation")
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  if isinstance(inst_eval, str):
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  normalized["installation_evaluation"] = {
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- "structured_evaluation": self._parse_structured_block(inst_eval, "structured_evaluation"),
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+ "structured_evaluation": self._parse_structured_block(inst_eval["evaluation"], "structured_evaluation"),
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  }
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+ else:
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+ normalized["installation_evaluation"] = inst_eval["evaluation"]
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+ normalized["installation_files"] = inst_eval["files"]
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- readme_eval = normalized.get("readme_evaluation")
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- if isinstance(readme_eval, dict):
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+ readme_eval = normalized.get("readme")
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+ if isinstance(readme_eval["evaluations"], dict):
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  fixed: Dict[str, Any] = {}
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  for fname, val in readme_eval.items():
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  if isinstance(val, str):
@@ -140,10 +143,16 @@ class EvaluationReportLoader:
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  else:
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  fixed[fname] = val
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  normalized["readme_evaluation"] = fixed
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+ normalized["readme_files"] = readme_eval["files"]
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- submit_eval = normalized.get("submission_requirements_evaluation")
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- if isinstance(submit_eval, str):
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- normalized["submission_requirements_evaluation"] = self._parse_submission_eval_str(submit_eval)
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+ userguide_eval = normalized.get("userguide")
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+ if isinstance(userguide_eval["evaluation"], dict):
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+ normalized["userguide_evaluation"] = userguide_eval["evaluation"]
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+ normalized["userguide_files"] = userguide_eval["files"]
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+
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+ # userguide_eval = normalized.get("userguide")
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+ # if isinstance(userguide_eval, str):
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+ # normalized["userguide_evaluation"] = self._parse_structured_block(userguide_eval["evaluation"], "structured_evaluation")
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  report = EvaluationReport(**normalized)
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  return report, report_path
{bioguider-0.2.27.dist-info → bioguider-0.2.28.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: bioguider
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- Version: 0.2.27
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+ Version: 0.2.28
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  Summary: An AI-Powered package to help biomedical developers to generate clear documentation
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  License: MIT
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  Author: Cankun Wang
{bioguider-0.2.27.dist-info → bioguider-0.2.28.dist-info}/RECORD RENAMED
@@ -51,7 +51,7 @@ bioguider/generation/llm_injector.py,sha256=bVxP6Asv2em4MBOB5yFsS14AuaeT7NLKQQMc
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  bioguider/generation/models.py,sha256=q9sF32Iu5VAa59UbheqPWEZn4bYeGGUVzpW24NJR_SM,2518
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  bioguider/generation/output_manager.py,sha256=V0eXYG9iaWxUjU44eLLX5mQcfjOz5tAKa_X0rkTc5Aw,1935
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  bioguider/generation/repo_reader.py,sha256=ivTURU61fR8er4ev7gSpOxER3FJv2d9GAx_X5JoVTvQ,1177
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- bioguider/generation/report_loader.py,sha256=KtJ6JHGPDL-PQoucU8hkVzMSz-B0bHbF2WShjuz2fY8,5102
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+ bioguider/generation/report_loader.py,sha256=m6_zcXsm5X6cFUB0ypVo1rjwjQzPAwwg83tc4H0X_eA,5598
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  bioguider/generation/style_analyzer.py,sha256=Vn9FAK1qJBNLolLC1tz362k4UBaPl107BlvkQc8pV2I,983
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  bioguider/generation/suggestion_extractor.py,sha256=tfkyWtdbAo-maLCF_wqwBXyh93yjulvDY17FuvTnTjk,7611
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  bioguider/generation/test_metrics.py,sha256=ACXmSZc2L_UkkmC5h2s4tG44MXW1d-hClFwPCD5_BFI,7505
@@ -74,7 +74,7 @@ bioguider/utils/pyphen_utils.py,sha256=cdZc3qphkvMDeL5NiZ8Xou13M_uVNP7ifJ-FwxO-0
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  bioguider/utils/python_file_handler.py,sha256=BERiE2RHxpu3gAzv26jr8ZQetkrtnMZOv9SjpQ7WIdg,2650
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  bioguider/utils/r_file_handler.py,sha256=8HpFaYKP8N1nItwr9tOx49m99pcLSt8EUtTNTJ7xNoE,19564
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  bioguider/utils/utils.py,sha256=h8OhCjzLpHkb3ndnjRBUOBHD7csbHdEVNXf75SRN8Zc,4413
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- bioguider-0.2.27.dist-info/LICENSE,sha256=qzkvZcKwwA5DuSuhXMOm2LcO6BdEr4V7jwFZVL2-jL4,1065
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- bioguider-0.2.27.dist-info/METADATA,sha256=NGUDYKPULcLif4PFGOTPpgXeeIILDsHT6-fu4Gh204o,1962
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- bioguider-0.2.27.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- bioguider-0.2.27.dist-info/RECORD,,
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+ bioguider-0.2.28.dist-info/LICENSE,sha256=qzkvZcKwwA5DuSuhXMOm2LcO6BdEr4V7jwFZVL2-jL4,1065
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+ bioguider-0.2.28.dist-info/METADATA,sha256=dprh6Ds8aqSlDhLUp7oeMlFB4rMa_7CP40JBecB4NRA,1962
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+ bioguider-0.2.28.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ bioguider-0.2.28.dist-info/RECORD,,