bioguider 0.2.25__py3-none-any.whl → 0.2.26__py3-none-any.whl

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Files changed (5) hide show
  1. bioguider/utils/utils.py +9 -5
  2. {bioguider-0.2.25.dist-info → bioguider-0.2.26.dist-info}/METADATA +1 -1
  3. {bioguider-0.2.25.dist-info → bioguider-0.2.26.dist-info}/RECORD +5 -5
  4. {bioguider-0.2.25.dist-info → bioguider-0.2.26.dist-info}/LICENSE +0 -0
  5. {bioguider-0.2.25.dist-info → bioguider-0.2.26.dist-info}/WHEEL +0 -0
bioguider/utils/utils.py CHANGED
@@ -53,10 +53,14 @@ def run_command(command: list, cwd: str = None, timeout: int = None):
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  return e.stdout or "", e.stderr or f"Command timed out after {timeout} seconds", -1
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  def escape_braces(text: str) -> str:
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- # First replace single } not part of }} with }}
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- text = re.sub(r'(?<!})}(?!})', '}}', text)
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- # Then replace single { not part of {{
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- text = re.sub(r'(?<!{){(?!{)', '{{', text)
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+ def fix_braces(m):
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+ s = m.group(0)
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+ # If odd number of braces, double the last one
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+ if len(s) % 2 == 1:
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+ return s + s[-1]
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+ return s
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+ # Handle both { and } sequences
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+ text = re.sub(r'{+|}+', fix_braces, text)
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  return text
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  def increase_token_usage(
@@ -105,7 +109,7 @@ def convert_to_serializable(obj):
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  else:
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  return obj
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- def convert_html_to_text(html_path: str | Path, exclude_tags: list[str] | None = None) -> str:
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+ def convert_html_to_text(html_path: str | Path, exclude_tags: list[str] = ["script", "style", "img", "svg", "meta", "link"]) -> str:
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  """
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  This function is used to convert html string to text, that is,
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  extract text from html content, including tables.
{bioguider-0.2.25.dist-info → bioguider-0.2.26.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: bioguider
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- Version: 0.2.25
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+ Version: 0.2.26
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  Summary: An AI-Powered package to help biomedical developers to generate clear documentation
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  License: MIT
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  Author: Cankun Wang
{bioguider-0.2.25.dist-info → bioguider-0.2.26.dist-info}/RECORD RENAMED
@@ -73,8 +73,8 @@ bioguider/utils/notebook_utils.py,sha256=SfU1iLuwgbDzNN-TUh_qbnfUSgn-PI6NrK6Qfmd
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  bioguider/utils/pyphen_utils.py,sha256=cdZc3qphkvMDeL5NiZ8Xou13M_uVNP7ifJ-FwxO-0BE,2680
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  bioguider/utils/python_file_handler.py,sha256=BERiE2RHxpu3gAzv26jr8ZQetkrtnMZOv9SjpQ7WIdg,2650
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  bioguider/utils/r_file_handler.py,sha256=8HpFaYKP8N1nItwr9tOx49m99pcLSt8EUtTNTJ7xNoE,19564
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- bioguider/utils/utils.py,sha256=_JOaAtLiQRq5Z1jb6Hb5KIbkYxCvX07qeRN21gKkt_o,4307
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- bioguider-0.2.25.dist-info/LICENSE,sha256=qzkvZcKwwA5DuSuhXMOm2LcO6BdEr4V7jwFZVL2-jL4,1065
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- bioguider-0.2.25.dist-info/METADATA,sha256=s54DzbxBT5IaNrWZyTwv63-8LV4iciTaK_wC8C34xAs,1962
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- bioguider-0.2.25.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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- bioguider-0.2.25.dist-info/RECORD,,
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+ bioguider/utils/utils.py,sha256=h8OhCjzLpHkb3ndnjRBUOBHD7csbHdEVNXf75SRN8Zc,4413
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+ bioguider-0.2.26.dist-info/LICENSE,sha256=qzkvZcKwwA5DuSuhXMOm2LcO6BdEr4V7jwFZVL2-jL4,1065
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+ bioguider-0.2.26.dist-info/METADATA,sha256=3wyoq1tcOVWAMH8Es4MfWGMYIHfIe8aWKU6rTYG9PD0,1962
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+ bioguider-0.2.26.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
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+ bioguider-0.2.26.dist-info/RECORD,,