biofiles 0.1.4__py3-none-any.whl → 0.1.5__py3-none-any.whl

biofiles/dialects/gencode.py

@@ -9,6 +9,8 @@ from biofiles.dialects.genomic_base import (
     Exon as BaseExon,
     CDS as BaseCDS,
     UTR as BaseUTR,
+    FivePrimeUTR as BaseFivePrimeUTR,
+    ThreePrimeUTR as BaseThreePrimeUTR,
 )
 from biofiles.types.feature import (
     Feature,
@@ -196,13 +198,13 @@ class UTR(BaseUTR, type="utr"):
     gene: Gene = utr_gene
 
 
-class FivePrimeUTR(UTR, type="five_prime_utr"):
+class FivePrimeUTR(BaseFivePrimeUTR, type="five_prime_utr"):
     id: NoneType = no_id_field()
     transcript: Transcript = five_prime_utr_transcript
     gene: Gene = five_prime_utr_gene
 
 
-class ThreePrimeUTR(UTR, type="three_prime_utr"):
+class ThreePrimeUTR(BaseThreePrimeUTR, type="three_prime_utr"):
     id: NoneType = no_id_field()
     transcript: Transcript = three_prime_utr_transcript
     gene: Gene = three_prime_utr_gene

biofiles/dialects/genomic_base.py

@@ -27,3 +27,11 @@ class CDS(Feature):
 
 class UTR(Feature):
     transcript: Transcript
+
+
+class FivePrimeUTR(UTR):
+    pass
+
+
+class ThreePrimeUTR(UTR):
+    pass

{biofiles-0.1.4.dist-info → biofiles-0.1.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: biofiles
-Version: 0.1.4
+Version: 0.1.5
 Summary: Pure-Python, zero-dependency collection of bioinformatics-related file readers and writers
 Author-email: Tigran Saluev <tigran@saluev.com>
 Maintainer-email: Tigran Saluev <tigran@saluev.com>

{biofiles-0.1.4.dist-info → biofiles-0.1.5.dist-info}/RECORD

@@ -8,8 +8,8 @@ biofiles/gtf.py,sha256=wCtHzLTCqR-oAGPtiRDJ4GvyS_Z5FzmLLzw8lgTj5Ig,3490
 biofiles/repeatmasker.py,sha256=7KObXELCHQ6oBkO8yK6Znrs6MX8sfVuxNSmOMe0Ogfk,3289
 biofiles/dialects/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biofiles/dialects/detector.py,sha256=OP42NhQf3s609fmDaRRFEMawgf0VMZdeAfkbK6IL4yM,2461
-biofiles/dialects/gencode.py,sha256=oxTKmcipalgdhy_eNhCqRd5Rdchz8Pn1SXlQHlg6YuM,7730
-biofiles/dialects/genomic_base.py,sha256=lzLgvFaJF9nTBnnJoSO_3lOYvBgBRUNOxRDfk1LJKK8,416
+biofiles/dialects/gencode.py,sha256=zCTIsLwjVfNRFctJnzHGkv2OH7T8plVbLz0LpiepmRg,7835
+biofiles/dialects/genomic_base.py,sha256=lI-lGc_1Ixj40MCxv8-2hqr3wR0xw8jRYaKrdlq1Rz0,489
 biofiles/dialects/refseq.py,sha256=ZjTpm-AOLs2jQRU9G4V11uiAAtrJop1OF-HyDIr-IrI,4217
 biofiles/dialects/stringtie.py,sha256=kuQ6IWRo7c4xkNjN-4jjYy3_dRUPorMaffYvDYvQDD8,834
 biofiles/types/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -20,8 +20,8 @@ biofiles/types/sequence.py,sha256=XeJ3wgi8AwRaVYVKmf41y5mOmWQfdsS8ysaRLZWbNoQ,25
 biofiles/utility/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biofiles/utility/cli.py,sha256=i2kYpPFnpTYdbd_6T-U9-egitKhDGQVDbw5gme4Kelg,4074
 biofiles/utility/feature.py,sha256=bHUOfYir_Dfk_DEBrlO1GXvkJKDRkpj2YJfSl4w698s,7931
-biofiles-0.1.4.dist-info/licenses/LICENSE,sha256=CbR8ssdFyViKj25JAlMjIt1_FbiZ1tAC5t-uwUbxqak,1070
-biofiles-0.1.4.dist-info/METADATA,sha256=F8mUHitETBM_anUAD7OXJeUjk9D6rFweToFttQm5T8s,3361
-biofiles-0.1.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
-biofiles-0.1.4.dist-info/top_level.txt,sha256=laFaFv8hpkI4U-Pgs0yBaAJXN2_CJKl7jb-m3-tGfSc,9
-biofiles-0.1.4.dist-info/RECORD,,
+biofiles-0.1.5.dist-info/licenses/LICENSE,sha256=CbR8ssdFyViKj25JAlMjIt1_FbiZ1tAC5t-uwUbxqak,1070
+biofiles-0.1.5.dist-info/METADATA,sha256=LSfoufJonsuWGYfyTsXjhZC1svlmtKMqUgMR8LnNJi4,3361
+biofiles-0.1.5.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+biofiles-0.1.5.dist-info/top_level.txt,sha256=laFaFv8hpkI4U-Pgs0yBaAJXN2_CJKl7jb-m3-tGfSc,9
+biofiles-0.1.5.dist-info/RECORD,,