biocypher 0.9.6__py3-none-any.whl → 0.9.7__py3-none-any.whl

biocypher/_metadata.py

@@ -10,7 +10,7 @@ import pathlib
 
 import toml
 
-_VERSION = "0.9.6"
+_VERSION = "0.9.7"
 
 
 def get_metadata():

biocypher/_translate.py

@@ -37,15 +37,12 @@ class Translator:
 
         Args:
         ----
-            leaves:
-                Dictionary detailing the leaves of the hierarchy
-                tree representing the structure of the graph; the leaves are
-                the entities that will be direct components of the graph,
-                while the intermediary nodes are additional labels for
-                filtering purposes.
+            ontology (Ontology): An Ontology object providing schema and mapping details.
             strict_mode:
-                If True, the translator will raise an error if input data do not
-                carry source, licence, and version information.
+                strict_mode (bool, optional): If True, enforces that every node and edge carries
+                the required 'source', 'licence', and 'version' properties. Raises ValueError
+                if these are missing. Defaults to False.
+
 
         """
         self.ontology = ontology

{biocypher-0.9.6.dist-info → biocypher-0.9.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: biocypher
-Version: 0.9.6
+Version: 0.9.7
 Summary: A unifying framework for biomedical research knowledge graphs
 Home-page: https://github.com/biocypher/biocypher
 License: MIT
@@ -62,7 +62,7 @@ the docs [here](https://biocypher.org).
            margin-left: auto;
            margin-right: auto;
            width: 70%;"
-    src="docs/graphical_abstract.png"
+    src="docs/assets/img/graphical-abstract-biocypher.png"
     alt="Graphical Abstract">
 </img>
 

{biocypher-0.9.6.dist-info → biocypher-0.9.7.dist-info}/RECORD

@@ -11,10 +11,10 @@ biocypher/_deduplicate.py,sha256=rtglcaLRaVzNjLtaPwTGP8VvCM4PHYQ5CZ-cm32CrKQ,484
 biocypher/_get.py,sha256=_wUjhRjH2J6Qhq0Ndy3kdfaWhHDTT-dxyCvtuH36My4,14868
 biocypher/_logger.py,sha256=y9dh3SPJOCWXnkFSYSK7aj_-pB7zlAkNCf43Dp1lt74,2941
 biocypher/_mapping.py,sha256=ntspG2C_NaQODhWTBFk0CDvolkOCjtqlQ9E-NkJAuTg,9030
-biocypher/_metadata.py,sha256=Jb4Uva2PzrPbxzio7DMQnX0WuIFrl_pgyDW89L1R1oQ,1415
+biocypher/_metadata.py,sha256=MzfAA6RQw7SDP9sRRrQQbAUKSBX_VIpqeh10qERhTg4,1415
 biocypher/_misc.py,sha256=YzlY7zwa0mim9QFg9HwXErkJFIH3cvLrbgjF8tKOIT8,6353
 biocypher/_ontology.py,sha256=lipZxU3aj6zrTbBrJZmCW6IRCuz-KQG3AfbYCVq6aFE,33133
-biocypher/_translate.py,sha256=9E19eLRL0VnxxDuiNhZ5vu54XyKXnfLuBhCgNcL9yAE,17000
+biocypher/_translate.py,sha256=NKSM9lxNjNNbgQrK_24eWYh3B41TS7kjnSwjySnK3s0,16851
 biocypher/output/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biocypher/output/connect/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 biocypher/output/connect/_get_connector.py,sha256=Qimv3kTkXYkhJZRT6nq8mwIM2wORCnyqqHqF2IByuuc,1152
@@ -38,7 +38,7 @@ biocypher/output/write/relational/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeR
 biocypher/output/write/relational/_csv.py,sha256=m0BSQXts88Qu5AEvoIgnwRz54ia38g4VN3PaA3LCYM8,2807
 biocypher/output/write/relational/_postgresql.py,sha256=75iJvv-0ewSsQXhVeoYoGnmYQnKY_B4iItZV7DpEBto,12190
 biocypher/output/write/relational/_sqlite.py,sha256=BuGWOeeNA83lbUvjpkzqcR9_baWLsbfmLXBKe4O1EPE,2105
-biocypher-0.9.6.dist-info/LICENSE,sha256=oejgxuxyjSnyPw3YPloz6-dCBB_nYizJ4jDQnr-xZUU,1082
-biocypher-0.9.6.dist-info/METADATA,sha256=8zvMLLWli78WBCjcBMhkqdwQb2rEqIinHz4aePh8RZw,10600
-biocypher-0.9.6.dist-info/WHEEL,sha256=FMvqSimYX_P7y0a7UY-_Mc83r5zkBZsCYPm7Lr0Bsq4,88
-biocypher-0.9.6.dist-info/RECORD,,
+biocypher-0.9.7.dist-info/LICENSE,sha256=oejgxuxyjSnyPw3YPloz6-dCBB_nYizJ4jDQnr-xZUU,1082
+biocypher-0.9.7.dist-info/METADATA,sha256=uJ0y5nC0-_fSDjV9WTfVvMzGU7K0LunAkSmZrID1IYo,10621
+biocypher-0.9.7.dist-info/WHEEL,sha256=FMvqSimYX_P7y0a7UY-_Mc83r5zkBZsCYPm7Lr0Bsq4,88
+biocypher-0.9.7.dist-info/RECORD,,