biocypher 0.9.3__py3-none-any.whl → 0.9.4__py3-none-any.whl

biocypher/_core.py

@@ -301,7 +301,7 @@ class BioCypher:
 
         return self._translator
 
-    def _get_writer(self):
+    def _initialize_writer(self) -> None:
         """Create writer if not online.
 
         Set as instance variable `self._writer`.
@@ -328,8 +328,6 @@ class BioCypher:
             msg = "Cannot get writer in online mode."
             raise NotImplementedError(msg)
 
-        return self._writer
-
     def _get_driver(self):
         """Create driver if not exists.
 
@@ -385,7 +383,9 @@ class BioCypher:
         translated_nodes = self._translator.translate_entities(nodes)
 
         if self._offline:
-            passed = self._get_writer().write_nodes(
+            if not self._writer:
+                self._initialize_writer()
+            passed = self._writer.write_nodes(
                 translated_nodes,
                 batch_size=batch_size,
                 force=force,

biocypher/_metadata.py

@@ -10,7 +10,7 @@ import pathlib
 
 import toml
 
-_VERSION = "0.9.3"
+_VERSION = "0.9.4"
 
 
 def get_metadata():

{biocypher-0.9.3.dist-info → biocypher-0.9.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: biocypher
-Version: 0.9.3
+Version: 0.9.4
 Summary: A unifying framework for biomedical research knowledge graphs
 Home-page: https://github.com/biocypher/biocypher
 License: MIT

{biocypher-0.9.3.dist-info → biocypher-0.9.4.dist-info}/RECORD

@@ -5,13 +5,13 @@ biocypher/_config/test_config.yaml,sha256=Np8jeS5_EP6HHOvMKb7B_Tkyqd5YaYlYz_DVsX
 biocypher/_config/test_schema_config.yaml,sha256=D1600WgEj3iTXrumVU9LIivJHJO36iaxfkOgyam9zVU,3129
 biocypher/_config/test_schema_config_disconnected.yaml,sha256=Qm8FLxEn2spHcyj_5F859KjcDvKSxNhxDvi4b4LLkvQ,68
 biocypher/_config/test_schema_config_extended.yaml,sha256=wn3A76142hhjnImhMF6RODbCFESTJ2TtPvcFdIFsAT0,3309
-biocypher/_core.py,sha256=S8frW62bc0V9M6gwU5l_D2ESa-7xwbOTffRuPqbIbT0,27382
+biocypher/_core.py,sha256=lP5CC35oXPtfiFY3C-UxZev8p1nMg9E2E4qN5BD9BTg,27437
 biocypher/_create.py,sha256=QsvXrwEQ8k0uNXvCG06UKejvw-QsJwzSaumrBjx9n1k,9884
 biocypher/_deduplicate.py,sha256=rtglcaLRaVzNjLtaPwTGP8VvCM4PHYQ5CZ-cm32CrKQ,4840
 biocypher/_get.py,sha256=BDNnvw6Xbz_Lq0ekU1Y60J4DI1zQKiZugJV6zGnWPsI,14873
 biocypher/_logger.py,sha256=y9dh3SPJOCWXnkFSYSK7aj_-pB7zlAkNCf43Dp1lt74,2941
 biocypher/_mapping.py,sha256=ntspG2C_NaQODhWTBFk0CDvolkOCjtqlQ9E-NkJAuTg,9030
-biocypher/_metadata.py,sha256=Z8vZYEjGXUNfcRhLpWBawExiESXuhhhIH7pxsbZYejU,1415
+biocypher/_metadata.py,sha256=BUH21dOZRsE7nvKZhWyqRfIp1j1ZqzsfMf8EVi7P-ok,1415
 biocypher/_misc.py,sha256=YzlY7zwa0mim9QFg9HwXErkJFIH3cvLrbgjF8tKOIT8,6353
 biocypher/_ontology.py,sha256=lipZxU3aj6zrTbBrJZmCW6IRCuz-KQG3AfbYCVq6aFE,33133
 biocypher/_translate.py,sha256=9E19eLRL0VnxxDuiNhZ5vu54XyKXnfLuBhCgNcL9yAE,17000
@@ -38,7 +38,7 @@ biocypher/output/write/relational/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeR
 biocypher/output/write/relational/_csv.py,sha256=m0BSQXts88Qu5AEvoIgnwRz54ia38g4VN3PaA3LCYM8,2807
 biocypher/output/write/relational/_postgresql.py,sha256=RckQJBiuwvDmHAyXxS8zCavYqDecHHWW_piofurokfQ,11965
 biocypher/output/write/relational/_sqlite.py,sha256=BuGWOeeNA83lbUvjpkzqcR9_baWLsbfmLXBKe4O1EPE,2105
-biocypher-0.9.3.dist-info/LICENSE,sha256=oejgxuxyjSnyPw3YPloz6-dCBB_nYizJ4jDQnr-xZUU,1082
-biocypher-0.9.3.dist-info/METADATA,sha256=5V08qJIN2n5vsedgGbk-ChO0OjrNxR5hJRvM4YEPSfo,10600
-biocypher-0.9.3.dist-info/WHEEL,sha256=FMvqSimYX_P7y0a7UY-_Mc83r5zkBZsCYPm7Lr0Bsq4,88
-biocypher-0.9.3.dist-info/RECORD,,
+biocypher-0.9.4.dist-info/LICENSE,sha256=oejgxuxyjSnyPw3YPloz6-dCBB_nYizJ4jDQnr-xZUU,1082
+biocypher-0.9.4.dist-info/METADATA,sha256=0RHGsElP0N8_NFH_NtFR4aHhfT-WmPBhlrkDYo9DRfU,10600
+biocypher-0.9.4.dist-info/WHEEL,sha256=FMvqSimYX_P7y0a7UY-_Mc83r5zkBZsCYPm7Lr0Bsq4,88
+biocypher-0.9.4.dist-info/RECORD,,