biocypher 0.9.2__py3-none-any.whl → 0.12.3__py3-none-any.whl

biocypher/_metadata.py

@@ -8,9 +8,12 @@ import importlib.metadata
 import os
 import pathlib
 
-import toml
+try:
+    import toml
+except ImportError:
+    toml = None
 
-_VERSION = "0.9.2"
+_VERSION = "0.12.3"
 
 
 def get_metadata():
@@ -28,16 +31,33 @@ def get_metadata():
     for project_dir in (here, here.parent):
         toml_path = str(project_dir.joinpath(pyproj_toml).absolute())
 
-        if os.path.exists(toml_path):
-            pyproject = toml.load(toml_path)
-
-            meta = {
-                "name": pyproject["tool"]["poetry"]["name"],
-                "version": pyproject["tool"]["poetry"]["version"],
-                "author": pyproject["tool"]["poetry"]["authors"],
-                "license": pyproject["tool"]["poetry"]["license"],
-                "full_metadata": pyproject,
-            }
+        if os.path.exists(toml_path) and toml is not None:
+            try:
+                pyproject = toml.load(toml_path)
+            except Exception:
+                # If toml parsing fails, skip and use fallback
+                continue
+
+            # Use modern PEP 621 format (uv/hatchling)
+            if "project" in pyproject:
+                project = pyproject["project"]
+                meta = {
+                    "name": project.get("name"),
+                    "version": project.get("version"),
+                    "author": project.get("authors", []),
+                    "license": project.get("license", {}).get("text"),
+                    "full_metadata": pyproject,
+                }
+            elif "tool" in pyproject and "poetry" in pyproject["tool"]:
+                # Legacy Poetry format fallback (for backward compatibility)
+                poetry = pyproject["tool"]["poetry"]
+                meta = {
+                    "name": poetry.get("name"),
+                    "version": poetry.get("version"),
+                    "author": poetry.get("authors", []),
+                    "license": poetry.get("license"),
+                    "full_metadata": pyproject,
+                }
 
             break
 

biocypher/_translate.py

@@ -37,15 +37,12 @@ class Translator:
 
         Args:
         ----
-            leaves:
-                Dictionary detailing the leaves of the hierarchy
-                tree representing the structure of the graph; the leaves are
-                the entities that will be direct components of the graph,
-                while the intermediary nodes are additional labels for
-                filtering purposes.
+            ontology (Ontology): An Ontology object providing schema and mapping details.
             strict_mode:
-                If True, the translator will raise an error if input data do not
-                carry source, licence, and version information.
+                strict_mode (bool, optional): If True, enforces that every node and edge carries
+                the required 'source', 'licence', and 'version' properties. Raises ValueError
+                if these are missing. Defaults to False.
+
 
         """
         self.ontology = ontology