biocypher 0.6.1__py3-none-any.whl → 0.7.0__py3-none-any.whl

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Files changed (33) hide show
  1. biocypher/__init__.py +3 -13
  2. biocypher/_config/__init__.py +6 -23
  3. biocypher/_core.py +360 -262
  4. biocypher/_create.py +13 -27
  5. biocypher/_deduplicate.py +4 -11
  6. biocypher/_get.py +21 -60
  7. biocypher/_logger.py +4 -16
  8. biocypher/_mapping.py +4 -17
  9. biocypher/_metadata.py +3 -15
  10. biocypher/_misc.py +14 -28
  11. biocypher/_ontology.py +127 -212
  12. biocypher/_translate.py +34 -58
  13. biocypher/output/connect/_get_connector.py +40 -0
  14. biocypher/output/connect/_neo4j_driver.py +9 -65
  15. biocypher/output/in_memory/_get_in_memory_kg.py +34 -0
  16. biocypher/output/in_memory/_in_memory_kg.py +40 -0
  17. biocypher/output/in_memory/_networkx.py +44 -0
  18. biocypher/output/in_memory/_pandas.py +20 -15
  19. biocypher/output/write/_batch_writer.py +137 -172
  20. biocypher/output/write/_get_writer.py +11 -24
  21. biocypher/output/write/_writer.py +14 -33
  22. biocypher/output/write/graph/_arangodb.py +7 -24
  23. biocypher/output/write/graph/_neo4j.py +59 -57
  24. biocypher/output/write/graph/_networkx.py +36 -43
  25. biocypher/output/write/graph/_rdf.py +114 -95
  26. biocypher/output/write/relational/_csv.py +6 -11
  27. biocypher/output/write/relational/_postgresql.py +12 -13
  28. biocypher/output/write/relational/_sqlite.py +3 -1
  29. {biocypher-0.6.1.dist-info → biocypher-0.7.0.dist-info}/LICENSE +1 -1
  30. {biocypher-0.6.1.dist-info → biocypher-0.7.0.dist-info}/METADATA +3 -3
  31. biocypher-0.7.0.dist-info/RECORD +43 -0
  32. {biocypher-0.6.1.dist-info → biocypher-0.7.0.dist-info}/WHEEL +1 -1
  33. biocypher-0.6.1.dist-info/RECORD +0 -39
biocypher-0.7.0.dist-info/RECORD ADDED
@@ -0,0 +1,43 @@
1
+ biocypher/__init__.py,sha256=-iq15Q3LhB8WBQjnD15ghszEdaqJ1XvQIF5IaF88KNQ,783
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+ biocypher/_config/__init__.py,sha256=ku86JZaRrzW5NEz5EXsCRktFwxS0Yo2dwX4UuazdfA4,3416
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+ biocypher/_config/biocypher_config.yaml,sha256=pusj0IjJM3uWRcm0N7U7mb1IX257HCV2reZV3YKFCk0,3037
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+ biocypher/_config/test_config.yaml,sha256=Np8jeS5_EP6HHOvMKb7B_Tkyqd5YaYlYz_DVsXypt-A,119
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+ biocypher/_config/test_schema_config.yaml,sha256=D1600WgEj3iTXrumVU9LIivJHJO36iaxfkOgyam9zVU,3129
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+ biocypher/_config/test_schema_config_disconnected.yaml,sha256=Qm8FLxEn2spHcyj_5F859KjcDvKSxNhxDvi4b4LLkvQ,68
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+ biocypher/_config/test_schema_config_extended.yaml,sha256=wn3A76142hhjnImhMF6RODbCFESTJ2TtPvcFdIFsAT0,3309
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+ biocypher/_core.py,sha256=CGbGHX3-JuJsQJsmLFsFNylPiPiJx83aXq05ocPSeUA,26354
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+ biocypher/_create.py,sha256=QsvXrwEQ8k0uNXvCG06UKejvw-QsJwzSaumrBjx9n1k,9884
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+ biocypher/_deduplicate.py,sha256=rtglcaLRaVzNjLtaPwTGP8VvCM4PHYQ5CZ-cm32CrKQ,4840
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+ biocypher/_get.py,sha256=2kjiBFu_onGUhgOpV7IMfGX67jyY1rpHg_GWncEUdrc,13278
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+ biocypher/_logger.py,sha256=y9dh3SPJOCWXnkFSYSK7aj_-pB7zlAkNCf43Dp1lt74,2941
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+ biocypher/_mapping.py,sha256=ntspG2C_NaQODhWTBFk0CDvolkOCjtqlQ9E-NkJAuTg,9030
14
+ biocypher/_metadata.py,sha256=yjVIaKnrerDo3ZQAYRQ67Dg3hlWQnwlOg8xwpFlSNQI,1415
15
+ biocypher/_misc.py,sha256=N8aDg8j3EEcKf9ZRqzSNruUEUK4RixCy1vQ1V4maGxk,6079
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+ biocypher/_ontology.py,sha256=McN50IAjmlVUUOc-7kpIdskCeatsmVpJ1a90ca6FQ7Y,30638
17
+ biocypher/_translate.py,sha256=sXyXIg6hpR6Y-dp8NtoAN-H4mzrGI4t1ivlBGxaeqWM,16379
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+ biocypher/output/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
19
+ biocypher/output/connect/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
20
+ biocypher/output/connect/_get_connector.py,sha256=r-DeDnvGyFEWOd9bXaXQOgVws9rgWz5kwwdzbmt5eKk,1038
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+ biocypher/output/connect/_neo4j_driver.py,sha256=kXjOXW12wZFfEp7plAuo40bPSvOfd-i9m4YaXoMq-p0,12357
22
+ biocypher/output/in_memory/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
23
+ biocypher/output/in_memory/_get_in_memory_kg.py,sha256=JuNwVx-qABeLikkI9VXQJNQH8xQWvYLEK_KKz3BrXPI,937
24
+ biocypher/output/in_memory/_in_memory_kg.py,sha256=g1TPN8PkeAyXbrRuTAjshqC8voI6EmLqR8S_otmviwU,1423
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+ biocypher/output/in_memory/_networkx.py,sha256=cSOSAreP7S3oeGT6noZ1kAIvSnkVnU3NUp1OY4yqzn0,1515
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+ biocypher/output/in_memory/_pandas.py,sha256=Ot2jbK5t_YLHqw0BUv9Z_qWNy9r6IX1LYEyejOSJzos,3288
27
+ biocypher/output/write/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
28
+ biocypher/output/write/_batch_writer.py,sha256=oyO3eG5-tsWpkFMdc-LChcFdBYsK5dYWBfHZRja0i2Y,36330
29
+ biocypher/output/write/_get_writer.py,sha256=PCF-JMCGwlh5hLl1SFLseNsBH1Nt49XTKcqximKwfDY,3532
30
+ biocypher/output/write/_writer.py,sha256=LLplYc2T9UVFkZlrwPypZ7XiLhSg5yzDE42NWuppdtk,7250
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+ biocypher/output/write/graph/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
32
+ biocypher/output/write/graph/_arangodb.py,sha256=NBnVJa4WuK7WNTIAXOg62YjAMAQfEZtcJX97erNLgSw,7794
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+ biocypher/output/write/graph/_neo4j.py,sha256=aMq8XKZ_UMbDI1gZmZx0D4T3pY2E4l1jMqX78M3TJK0,12051
34
+ biocypher/output/write/graph/_networkx.py,sha256=2WYkw5ZM3Bp236iwAxEAp3A1DxHKT4_hEPNMUKvPHp4,2320
35
+ biocypher/output/write/graph/_rdf.py,sha256=Vt_mb3HsRrDdrWmwwPsGXshbjjiUd9ZAoLJxoKoglCE,18075
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+ biocypher/output/write/relational/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ biocypher/output/write/relational/_csv.py,sha256=m0BSQXts88Qu5AEvoIgnwRz54ia38g4VN3PaA3LCYM8,2807
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+ biocypher/output/write/relational/_postgresql.py,sha256=RckQJBiuwvDmHAyXxS8zCavYqDecHHWW_piofurokfQ,11965
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+ biocypher/output/write/relational/_sqlite.py,sha256=BuGWOeeNA83lbUvjpkzqcR9_baWLsbfmLXBKe4O1EPE,2105
40
+ biocypher-0.7.0.dist-info/LICENSE,sha256=oejgxuxyjSnyPw3YPloz6-dCBB_nYizJ4jDQnr-xZUU,1082
41
+ biocypher-0.7.0.dist-info/METADATA,sha256=HTZXVo7kcxmwJFlv913SN6dh_LmdiRsNllNQZ9xr5-E,10643
42
+ biocypher-0.7.0.dist-info/WHEEL,sha256=FMvqSimYX_P7y0a7UY-_Mc83r5zkBZsCYPm7Lr0Bsq4,88
43
+ biocypher-0.7.0.dist-info/RECORD,,
{biocypher-0.6.1.dist-info → biocypher-0.7.0.dist-info}/WHEEL RENAMED
@@ -1,4 +1,4 @@
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  Wheel-Version: 1.0
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- Generator: poetry-core 1.6.1
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+ Generator: poetry-core 1.8.1
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  Root-Is-Purelib: true
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  Tag: py3-none-any
biocypher-0.6.1.dist-info/RECORD DELETED
@@ -1,39 +0,0 @@
1
- biocypher/__init__.py,sha256=-vr7dGUv6QK7f_i9mmUK5WpMsZuFPflUEFC4oElJTCA,980
2
- biocypher/_config/__init__.py,sha256=fFHRFYxE2MtDAQWL6upe--MJ1vw3Z8CwIPhF2gW8cRU,3698
3
- biocypher/_config/biocypher_config.yaml,sha256=pusj0IjJM3uWRcm0N7U7mb1IX257HCV2reZV3YKFCk0,3037
4
- biocypher/_config/test_config.yaml,sha256=Np8jeS5_EP6HHOvMKb7B_Tkyqd5YaYlYz_DVsXypt-A,119
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- biocypher/_config/test_schema_config.yaml,sha256=D1600WgEj3iTXrumVU9LIivJHJO36iaxfkOgyam9zVU,3129
6
- biocypher/_config/test_schema_config_disconnected.yaml,sha256=Qm8FLxEn2spHcyj_5F859KjcDvKSxNhxDvi4b4LLkvQ,68
7
- biocypher/_config/test_schema_config_extended.yaml,sha256=wn3A76142hhjnImhMF6RODbCFESTJ2TtPvcFdIFsAT0,3309
8
- biocypher/_core.py,sha256=m4o4Szv2xY2gl3PnNAA9m7Gg5Sgd8iR9THv3RDyZlQ8,22618
9
- biocypher/_create.py,sha256=vpUchUdEpWupZi1LgFLxAWMtqoBwnWbP7PwEDUCBS4A,10202
10
- biocypher/_deduplicate.py,sha256=BBvfpXzu6L5YDY5FdtXxnf8YlsbJpbCE8RdUoKsm0n0,4949
11
- biocypher/_get.py,sha256=1FHs4n2R2k7OVWtVe7euF2J5WpsUXsFAmnpdSYuhLvY,13817
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- biocypher/_logger.py,sha256=NGXe3hZA79WSujfOgpcxHBf8N2QAfrmvM1LFDpsGK2U,3185
13
- biocypher/_mapping.py,sha256=ERSNH2Bg19145KytxbFE4BInPaiP-LWW7osOBot29Eo,9304
14
- biocypher/_metadata.py,sha256=E4Ei48t7ZASflo58HSMUoLe8WlQnNt0d5w-68FantVA,1657
15
- biocypher/_misc.py,sha256=oKNfmj9mUKDYtmx-R6FCZxRa7AOut3VKZZm16KFimyY,6363
16
- biocypher/_ontology.py,sha256=G5k-bnzvPZUqhLPxtoOPFa4OSQ4JpufgozVakLTjwLg,31789
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- biocypher/_translate.py,sha256=JafvhtVaFSpruRfYh9BzjVbvDF1Mhg7LLKMDZHWkRjg,16496
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- biocypher/output/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- biocypher/output/connect/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- biocypher/output/connect/_neo4j_driver.py,sha256=jzF5sDhs_WnYEfXiSjQ1P3wNgoadl4Cg80EUYYOk0Ro,13497
21
- biocypher/output/in_memory/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
22
- biocypher/output/in_memory/_pandas.py,sha256=lsYQKjfxUy0O-ae4-YpsCJX-l85bxyc60WOj8gKfMfU,3080
23
- biocypher/output/write/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
24
- biocypher/output/write/_batch_writer.py,sha256=3pdS8ZLN4sBwATXaXFaSrfPQmejjFjo0avHkPQavFSU,36959
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- biocypher/output/write/_get_writer.py,sha256=AeQcHQTrz68ZvtxsZl4W0ymc8cOxe3Qfq5PJRY7kq_I,3736
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- biocypher/output/write/_writer.py,sha256=v4-c8yME1UCJeqy8Lfmv7KtY7_B4QkWgADt5xkFNJFQ,7453
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- biocypher/output/write/graph/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
28
- biocypher/output/write/graph/_arangodb.py,sha256=aUa_CNZyunFaPrJHc9RtVHRo0Fca9xJ-ZmRz4PxPO8c,8078
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- biocypher/output/write/graph/_neo4j.py,sha256=ZINbfrv7gBAgHMT9uE4HCznosNRspT3SmPV83XXfhCw,11849
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- biocypher/output/write/graph/_networkx.py,sha256=EW2we3FlqQ8KfLv4l_2wE27KBUlhXJyD5ORvowSjlaA,2545
31
- biocypher/output/write/graph/_rdf.py,sha256=BtunVo0iaCVM9I2tWOYwGpB9itbngHBjP0RhwgcJUiM,17977
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- biocypher/output/write/relational/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
33
- biocypher/output/write/relational/_csv.py,sha256=eyAtmwfCNYnuVbkpd0rUoo9KgG2KPgopZVA3X97tRLU,2919
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- biocypher/output/write/relational/_postgresql.py,sha256=6sABZaELzmV7a2aUy2iRksf28WFsc3EA9mdQ2mShPeM,11959
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- biocypher/output/write/relational/_sqlite.py,sha256=ozElhca1YCYq8R-VFh-LDsnPBaXVJm2cvEboBK2LVVY,2073
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- biocypher-0.6.1.dist-info/LICENSE,sha256=SjUaQkq671iQUZOxEUpC4jvJxXOlfSiHTTueyz9kXJM,1065
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- biocypher-0.6.1.dist-info/METADATA,sha256=WR311EH67e8M_0wNaHbo88a7zU2Tl4y681GyI1fC4xY,10641
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- biocypher-0.6.1.dist-info/WHEEL,sha256=Zb28QaM1gQi8f4VCBhsUklF61CTlNYfs9YAZn-TOGFk,88
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- biocypher-0.6.1.dist-info/RECORD,,