biocypher 0.6.0__py3-none-any.whl → 0.6.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of biocypher might be problematic. Click here for more details.
- biocypher/__init__.py +3 -2
- biocypher/_get.py +5 -6
- biocypher/_metadata.py +1 -1
- {biocypher-0.6.0.dist-info → biocypher-0.6.1.dist-info}/METADATA +1 -1
- {biocypher-0.6.0.dist-info → biocypher-0.6.1.dist-info}/RECORD +7 -7
- {biocypher-0.6.0.dist-info → biocypher-0.6.1.dist-info}/LICENSE +0 -0
- {biocypher-0.6.0.dist-info → biocypher-0.6.1.dist-info}/WHEEL +0 -0
biocypher/__init__.py
CHANGED
|
@@ -21,10 +21,11 @@ __all__ = [
|
|
|
21
21
|
"log",
|
|
22
22
|
"Driver",
|
|
23
23
|
"BioCypher",
|
|
24
|
-
"
|
|
24
|
+
"FileDownload",
|
|
25
|
+
"APIRequest",
|
|
25
26
|
]
|
|
26
27
|
|
|
27
|
-
from ._get import
|
|
28
|
+
from ._get import APIRequest, FileDownload
|
|
28
29
|
from ._core import BioCypher
|
|
29
30
|
from ._config import config, module_data
|
|
30
31
|
from ._logger import log, logger, logfile
|
biocypher/_get.py
CHANGED
|
@@ -228,13 +228,12 @@ class Downloader:
|
|
|
228
228
|
paths = []
|
|
229
229
|
for url in file_download.url_s:
|
|
230
230
|
fname = url[url.rfind("/") + 1 :].split("?")[0]
|
|
231
|
-
|
|
232
|
-
|
|
233
|
-
|
|
234
|
-
|
|
235
|
-
path=os.path.join(self.cache_dir, file_download.name),
|
|
236
|
-
)
|
|
231
|
+
path = self._retrieve(
|
|
232
|
+
url=url,
|
|
233
|
+
fname=fname,
|
|
234
|
+
path=os.path.join(self.cache_dir, file_download.name),
|
|
237
235
|
)
|
|
236
|
+
paths.append(path)
|
|
238
237
|
else:
|
|
239
238
|
paths = []
|
|
240
239
|
fname = file_download.url_s[
|
biocypher/_metadata.py
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
biocypher/__init__.py,sha256
|
|
1
|
+
biocypher/__init__.py,sha256=-vr7dGUv6QK7f_i9mmUK5WpMsZuFPflUEFC4oElJTCA,980
|
|
2
2
|
biocypher/_config/__init__.py,sha256=fFHRFYxE2MtDAQWL6upe--MJ1vw3Z8CwIPhF2gW8cRU,3698
|
|
3
3
|
biocypher/_config/biocypher_config.yaml,sha256=pusj0IjJM3uWRcm0N7U7mb1IX257HCV2reZV3YKFCk0,3037
|
|
4
4
|
biocypher/_config/test_config.yaml,sha256=Np8jeS5_EP6HHOvMKb7B_Tkyqd5YaYlYz_DVsXypt-A,119
|
|
@@ -8,10 +8,10 @@ biocypher/_config/test_schema_config_extended.yaml,sha256=wn3A76142hhjnImhMF6ROD
|
|
|
8
8
|
biocypher/_core.py,sha256=m4o4Szv2xY2gl3PnNAA9m7Gg5Sgd8iR9THv3RDyZlQ8,22618
|
|
9
9
|
biocypher/_create.py,sha256=vpUchUdEpWupZi1LgFLxAWMtqoBwnWbP7PwEDUCBS4A,10202
|
|
10
10
|
biocypher/_deduplicate.py,sha256=BBvfpXzu6L5YDY5FdtXxnf8YlsbJpbCE8RdUoKsm0n0,4949
|
|
11
|
-
biocypher/_get.py,sha256=
|
|
11
|
+
biocypher/_get.py,sha256=1FHs4n2R2k7OVWtVe7euF2J5WpsUXsFAmnpdSYuhLvY,13817
|
|
12
12
|
biocypher/_logger.py,sha256=NGXe3hZA79WSujfOgpcxHBf8N2QAfrmvM1LFDpsGK2U,3185
|
|
13
13
|
biocypher/_mapping.py,sha256=ERSNH2Bg19145KytxbFE4BInPaiP-LWW7osOBot29Eo,9304
|
|
14
|
-
biocypher/_metadata.py,sha256=
|
|
14
|
+
biocypher/_metadata.py,sha256=E4Ei48t7ZASflo58HSMUoLe8WlQnNt0d5w-68FantVA,1657
|
|
15
15
|
biocypher/_misc.py,sha256=oKNfmj9mUKDYtmx-R6FCZxRa7AOut3VKZZm16KFimyY,6363
|
|
16
16
|
biocypher/_ontology.py,sha256=G5k-bnzvPZUqhLPxtoOPFa4OSQ4JpufgozVakLTjwLg,31789
|
|
17
17
|
biocypher/_translate.py,sha256=JafvhtVaFSpruRfYh9BzjVbvDF1Mhg7LLKMDZHWkRjg,16496
|
|
@@ -33,7 +33,7 @@ biocypher/output/write/relational/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeR
|
|
|
33
33
|
biocypher/output/write/relational/_csv.py,sha256=eyAtmwfCNYnuVbkpd0rUoo9KgG2KPgopZVA3X97tRLU,2919
|
|
34
34
|
biocypher/output/write/relational/_postgresql.py,sha256=6sABZaELzmV7a2aUy2iRksf28WFsc3EA9mdQ2mShPeM,11959
|
|
35
35
|
biocypher/output/write/relational/_sqlite.py,sha256=ozElhca1YCYq8R-VFh-LDsnPBaXVJm2cvEboBK2LVVY,2073
|
|
36
|
-
biocypher-0.6.
|
|
37
|
-
biocypher-0.6.
|
|
38
|
-
biocypher-0.6.
|
|
39
|
-
biocypher-0.6.
|
|
36
|
+
biocypher-0.6.1.dist-info/LICENSE,sha256=SjUaQkq671iQUZOxEUpC4jvJxXOlfSiHTTueyz9kXJM,1065
|
|
37
|
+
biocypher-0.6.1.dist-info/METADATA,sha256=WR311EH67e8M_0wNaHbo88a7zU2Tl4y681GyI1fC4xY,10641
|
|
38
|
+
biocypher-0.6.1.dist-info/WHEEL,sha256=Zb28QaM1gQi8f4VCBhsUklF61CTlNYfs9YAZn-TOGFk,88
|
|
39
|
+
biocypher-0.6.1.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|