biocypher 0.5.41__py3-none-any.whl → 0.5.43__py3-none-any.whl

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Files changed (28) hide show
  1. biocypher/_config/biocypher_config.yaml +15 -0
  2. biocypher/_core.py +3 -3
  3. biocypher/_metadata.py +1 -1
  4. biocypher/_misc.py +6 -1
  5. biocypher/_ontology.py +133 -53
  6. biocypher/{_connect.py → output/connect/_neo4j_driver.py} +5 -5
  7. biocypher/{_pandas.py → output/in_memory/_pandas.py} +2 -1
  8. biocypher/output/write/__init__.py +0 -0
  9. biocypher/{write → output/write}/_batch_writer.py +26 -22
  10. biocypher/{write/_write.py → output/write/_get_writer.py} +19 -11
  11. biocypher/output/write/_writer.py +200 -0
  12. biocypher/output/write/graph/__init__.py +0 -0
  13. biocypher/{write → output/write}/graph/_arangodb.py +1 -1
  14. biocypher/{write → output/write}/graph/_neo4j.py +2 -4
  15. biocypher/output/write/graph/_networkx.py +76 -0
  16. biocypher/output/write/graph/_rdf.py +515 -0
  17. biocypher/output/write/relational/__init__.py +0 -0
  18. biocypher/output/write/relational/_csv.py +76 -0
  19. biocypher/{write → output/write}/relational/_postgresql.py +2 -2
  20. biocypher/{write → output/write}/relational/_sqlite.py +1 -1
  21. {biocypher-0.5.41.dist-info → biocypher-0.5.43.dist-info}/METADATA +1 -1
  22. biocypher-0.5.43.dist-info/RECORD +39 -0
  23. biocypher-0.5.41.dist-info/RECORD +0 -32
  24. /biocypher/{write → output}/__init__.py +0 -0
  25. /biocypher/{write/graph → output/connect}/__init__.py +0 -0
  26. /biocypher/{write/relational → output/in_memory}/__init__.py +0 -0
  27. {biocypher-0.5.41.dist-info → biocypher-0.5.43.dist-info}/LICENSE +0 -0
  28. {biocypher-0.5.41.dist-info → biocypher-0.5.43.dist-info}/WHEEL +0 -0
biocypher-0.5.41.dist-info/RECORD DELETED
@@ -1,32 +0,0 @@
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- biocypher/__init__.py,sha256=ejNY53vH_pE3ZbIN8G_ZBYxxPG9aERovRLD0XhDvt4k,942
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- biocypher/_config/__init__.py,sha256=fFHRFYxE2MtDAQWL6upe--MJ1vw3Z8CwIPhF2gW8cRU,3698
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- biocypher/_config/biocypher_config.yaml,sha256=TEvIOgRy9WMvsb2CrV1ywuKLZWbedYubCC2bpdBIalU,2713
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- biocypher/_config/test_config.yaml,sha256=Np8jeS5_EP6HHOvMKb7B_Tkyqd5YaYlYz_DVsXypt-A,119
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- biocypher/_config/test_schema_config.yaml,sha256=D1600WgEj3iTXrumVU9LIivJHJO36iaxfkOgyam9zVU,3129
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- biocypher/_config/test_schema_config_disconnected.yaml,sha256=Qm8FLxEn2spHcyj_5F859KjcDvKSxNhxDvi4b4LLkvQ,68
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- biocypher/_config/test_schema_config_extended.yaml,sha256=wn3A76142hhjnImhMF6RODbCFESTJ2TtPvcFdIFsAT0,3309
8
- biocypher/_connect.py,sha256=7hk3J03hzZOPE48ISaoB6IgRun8GaUmDtIRnnD7vKiU,13453
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- biocypher/_core.py,sha256=5rZKYie_vSjTYduH8oH-GxLMZuNqLAe3ZYAQ5nUp8Nc,22578
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- biocypher/_create.py,sha256=vpUchUdEpWupZi1LgFLxAWMtqoBwnWbP7PwEDUCBS4A,10202
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- biocypher/_deduplicate.py,sha256=BBvfpXzu6L5YDY5FdtXxnf8YlsbJpbCE8RdUoKsm0n0,4949
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- biocypher/_get.py,sha256=3Kpky3blfNf1JwxKWLsZxTU2aTP_C4sUe8OpiyYj63I,10810
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- biocypher/_logger.py,sha256=NGXe3hZA79WSujfOgpcxHBf8N2QAfrmvM1LFDpsGK2U,3185
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- biocypher/_mapping.py,sha256=ERSNH2Bg19145KytxbFE4BInPaiP-LWW7osOBot29Eo,9304
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- biocypher/_metadata.py,sha256=GGh6YvKYrRWqdyZQYTaLnkYPaHgVHz00V6kpXQdjr2k,1658
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- biocypher/_misc.py,sha256=lUUbF13FdBlYq01C-Vit52IbeRehW0oSUWsQ9tFC-xo,5938
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- biocypher/_ontology.py,sha256=3Wu1ZZYmtLpWfopi-aY9BA8qZ-ltPMXN4Ok_diK1YdA,28410
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- biocypher/_pandas.py,sha256=GVCFM68J7yBjh40MpkNVgD8qT1RFMrrIjMOtD3iKsf4,3040
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- biocypher/_translate.py,sha256=JafvhtVaFSpruRfYh9BzjVbvDF1Mhg7LLKMDZHWkRjg,16496
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- biocypher/write/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
21
- biocypher/write/_batch_writer.py,sha256=Ta2DNjSnJcVtFDMOGTtH5nnbKwyqSGf7xXGpYzi1bDM,36826
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- biocypher/write/_write.py,sha256=HLFQyGqLdkmIoBOjL9m81OUuSsHjvSfK9LY4jtrinv0,3104
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- biocypher/write/graph/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
24
- biocypher/write/graph/_arangodb.py,sha256=du5pivCR7xKs8VyxeegxYsSBIcsXGrfSbM_AffFapwg,8071
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- biocypher/write/graph/_neo4j.py,sha256=qSj1PryD4UmveS7ACs1R3eo2pegi53pVI7d7P0ihOKI,11930
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- biocypher/write/relational/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- biocypher/write/relational/_postgresql.py,sha256=NdI-ULP8valsqlkObOg50od-3-amVj5RzGnZ_7NW2ww,11945
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- biocypher/write/relational/_sqlite.py,sha256=KLQpxQXF1B8qqTtKUFfjWdwHjd1Fhn9syK931Z0dsq0,2066
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- biocypher-0.5.41.dist-info/LICENSE,sha256=SjUaQkq671iQUZOxEUpC4jvJxXOlfSiHTTueyz9kXJM,1065
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- biocypher-0.5.41.dist-info/METADATA,sha256=D23b4n9k_oEmXIMC3eKYJLP5MJVVYHkAeAWB8DAFpYk,10642
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- biocypher-0.5.41.dist-info/WHEEL,sha256=Zb28QaM1gQi8f4VCBhsUklF61CTlNYfs9YAZn-TOGFk,88
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- biocypher-0.5.41.dist-info/RECORD,,
/biocypher/{write → output}/__init__.py RENAMED
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/biocypher/{write/graph → output/connect}/__init__.py RENAMED
File without changes