bio2zarr 0.1.3__py3-none-any.whl → 0.1.4__py3-none-any.whl

bio2zarr/_version.py

@@ -17,5 +17,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.1.3'
-__version_tuple__ = version_tuple = (0, 1, 3)
+__version__ = version = '0.1.4'
+__version_tuple__ = version_tuple = (0, 1, 4)

bio2zarr/vcf2zarr/icf.py

@@ -1095,9 +1095,8 @@ class IntermediateColumnarFormatWriter:
                     for field in info_fields:
                         tcw.append(field.full_name, variant.INFO.get(field.name, None))
                     if has_gt:
-                        if variant.genotype is None:
-                            val = None
-                        else:
+                        val = None
+                        if "GT" in variant.FORMAT and variant.genotype is not None:
                             val = variant.genotype.array()
                         tcw.append("FORMAT/GT", val)
                     for field in format_fields:

{bio2zarr-0.1.3.dist-info → bio2zarr-0.1.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: bio2zarr
-Version: 0.1.3
+Version: 0.1.4
 Summary: Convert bioinformatics data to Zarr
 Author-email: sgkit Developers <project@sgkit.dev>
 License:                                  Apache License

{bio2zarr-0.1.3.dist-info → bio2zarr-0.1.4.dist-info}/RECORD

@@ -1,6 +1,6 @@
 bio2zarr/__init__.py,sha256=KiUGyya-9RHNcBldB8Lc1g3rP3CRjaL-5Olben0_6qA,49
 bio2zarr/__main__.py,sha256=wUKNNps8MAAEpMvLgVaI449eKyfr7Jpk2mMtYbNl4Ek,531
-bio2zarr/_version.py,sha256=NIzzV8ZM0W-CSLuEs1weG4zPrn_-8yr1AwwI1iuS6yo,511
+bio2zarr/_version.py,sha256=hcPkC9vIGgfrKK6ft7ysLT7iOCjpFmCBmyKLmXiaZ1g,511
 bio2zarr/cli.py,sha256=Iife89BfTR_AUarm-AIW0lAIYxd370OmP1KKePgFXzk,16008
 bio2zarr/constants.py,sha256=QjbtFeBUZ-XqG35ZFIFj8EYrta_EwUkC2B5VGRP7oQs,425
 bio2zarr/core.py,sha256=4xqNf3Txgyhcx23bzXZHq3GW0Jh24fPQwob7lKO7s0w,11668
@@ -10,12 +10,12 @@ bio2zarr/typing.py,sha256=BYxhL16sKRoNxa6amf6AYxvt5Ke9qzv2np_kOT_zPJo,79
 bio2zarr/vcf_utils.py,sha256=tuPzuMiwGYgMlQA49L6EuIplw9DOVaOw1DTa03OJS7k,18268
 bio2zarr/zarr_utils.py,sha256=99J7ycaG92K_AcWRF2S9A4ec2_4cXL6kjYT99GBfli4,415
 bio2zarr/vcf2zarr/__init__.py,sha256=0_of1iGzIDhvti49Gbcgd47oP63mKvouk9uLgKgiwoQ,791
-bio2zarr/vcf2zarr/icf.py,sha256=wGYgDMvfZBgNp2KuUiVhxbG9KIeT0W4-gQOb7SfZkis,42418
+bio2zarr/vcf2zarr/icf.py,sha256=_gYCn4PBTB6MUmXoc7DROz0VaMdloY-Eeo3GPbSq28Q,42415
 bio2zarr/vcf2zarr/vcz.py,sha256=cfUCBsQW5dbhDu7NzXkd1Dalsev7UkFDXVOyChAHw8Q,49409
 bio2zarr/vcf2zarr/verification.py,sha256=uM-mg0yvUTBs-MvWBd4jxTS0zKCUbxEQpm4ALJADdMI,8037
-bio2zarr-0.1.3.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-bio2zarr-0.1.3.dist-info/METADATA,sha256=Joji4xU0q9NoTKh1qiM1opSrNDDdzG6V05t0qx_emj4,14978
-bio2zarr-0.1.3.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
-bio2zarr-0.1.3.dist-info/entry_points.txt,sha256=3adtRrClMpjatEbiYqK5bm9WHA2PaJN5hK-Cs_zkpaI,97
-bio2zarr-0.1.3.dist-info/top_level.txt,sha256=ouAvp3u9N25eKrQbN8BCDLPcWWQLhtlgdHKu8AtEj5Q,9
-bio2zarr-0.1.3.dist-info/RECORD,,
+bio2zarr-0.1.4.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+bio2zarr-0.1.4.dist-info/METADATA,sha256=goC7scfCITs1Uw_AWy42Eq3iOaL8uEZvwss2CcuAvos,14978
+bio2zarr-0.1.4.dist-info/WHEEL,sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8,91
+bio2zarr-0.1.4.dist-info/entry_points.txt,sha256=3adtRrClMpjatEbiYqK5bm9WHA2PaJN5hK-Cs_zkpaI,97
+bio2zarr-0.1.4.dist-info/top_level.txt,sha256=ouAvp3u9N25eKrQbN8BCDLPcWWQLhtlgdHKu8AtEj5Q,9
+bio2zarr-0.1.4.dist-info/RECORD,,

{bio2zarr-0.1.3.dist-info → bio2zarr-0.1.4.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.8.2)
+Generator: setuptools (76.0.0)
 Root-Is-Purelib: true
 Tag: py3-none-any