bio2zarr 0.0.6__py3-none-any.whl → 0.0.9__py3-none-any.whl

bio2zarr/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6'
-__version_tuple__ = version_tuple = (0, 0, 6)
+__version__ = version = '0.0.9'
+__version_tuple__ = version_tuple = (0, 0, 9)

bio2zarr/cli.py

@@ -233,7 +233,7 @@ def dexplode_partition(icf_path, partition, verbose):
     from 0 (inclusive) to the number of paritions returned by dexplode_init (exclusive).
     """
     setup_logging(verbose)
-    vcf.explode_partition(icf_path, partition, show_progress=False)
+    vcf.explode_partition(icf_path, partition)
 
 
 @click.command

bio2zarr/core.py

@@ -3,6 +3,8 @@ import contextlib
 import dataclasses
 import logging
 import multiprocessing
+import os
+import os.path
 import threading
 import time
 
@@ -45,6 +47,22 @@ def chunk_aligned_slices(z, n, max_chunks=None):
     return slices
 
 
+def du(path):
+    """
+    Return the total bytes stored at this path.
+    """
+    total = os.path.getsize(path)
+    # pathlib walk method doesn't exist until 3.12 :(
+    for root, dirs, files in os.walk(path):
+        for lst in [dirs, files]:
+            for name in lst:
+                fullname = os.path.join(root, name)
+                size = os.path.getsize(fullname)
+                total += size
+    logger.debug(f"du({path}) = {total}")
+    return total
+
+
 class SynchronousExecutor(cf.Executor):
     def submit(self, fn, /, *args, **kwargs):
         future = cf.Future()