bio2zarr 0.0.6__py3-none-any.whl → 0.0.10__py3-none-any.whl

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Files changed (20) hide show
  1. bio2zarr/__main__.py +2 -2
  2. bio2zarr/_version.py +2 -2
  3. bio2zarr/cli.py +87 -95
  4. bio2zarr/constants.py +18 -0
  5. bio2zarr/core.py +52 -16
  6. bio2zarr/vcf2zarr/__init__.py +38 -0
  7. bio2zarr/vcf2zarr/icf.py +1220 -0
  8. bio2zarr/vcf2zarr/vcz.py +1017 -0
  9. bio2zarr/vcf2zarr/verification.py +230 -0
  10. bio2zarr/vcf_utils.py +26 -17
  11. bio2zarr-0.0.10.dist-info/METADATA +250 -0
  12. bio2zarr-0.0.10.dist-info/RECORD +20 -0
  13. bio2zarr-0.0.10.dist-info/entry_points.txt +3 -0
  14. bio2zarr/vcf.py +0 -2406
  15. bio2zarr-0.0.6.dist-info/METADATA +0 -33
  16. bio2zarr-0.0.6.dist-info/RECORD +0 -16
  17. bio2zarr-0.0.6.dist-info/entry_points.txt +0 -4
  18. {bio2zarr-0.0.6.dist-info → bio2zarr-0.0.10.dist-info}/LICENSE +0 -0
  19. {bio2zarr-0.0.6.dist-info → bio2zarr-0.0.10.dist-info}/WHEEL +0 -0
  20. {bio2zarr-0.0.6.dist-info → bio2zarr-0.0.10.dist-info}/top_level.txt +0 -0
bio2zarr-0.0.6.dist-info/METADATA DELETED
@@ -1,33 +0,0 @@
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- Metadata-Version: 2.1
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- Name: bio2zarr
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- Version: 0.0.6
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- Summary: Convert bioinformatics data to Zarr
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- Home-page: https://github.com/pystatgen/bio2zarr
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- Author: sgkit Developers
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- Author-email: project@pystatgen.org
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- License: Apache
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- Classifier: Development Status :: 3 - Alpha
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- Classifier: License :: OSI Approved :: Apache Software License
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- Classifier: Operating System :: OS Independent
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- Classifier: Intended Audience :: Science/Research
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- Classifier: Programming Language :: Python
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- Classifier: Programming Language :: Python :: 3
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- Classifier: Programming Language :: Python :: 3.9
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- Classifier: Programming Language :: Python :: 3.10
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- Classifier: Programming Language :: Python :: 3.11
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- Classifier: Topic :: Scientific/Engineering
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- Requires-Python: >=3.9
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- Description-Content-Type: text/x-rst
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- License-File: LICENSE
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- Requires-Dist: numpy
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- Requires-Dist: zarr >=2.17
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- Requires-Dist: click
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- Requires-Dist: tabulate
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- Requires-Dist: tqdm
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- Requires-Dist: humanfriendly
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- Requires-Dist: cyvcf2
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- Requires-Dist: bed-reader
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-
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-
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- This is an early alpha release for testing and development.
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- **Do not use in production**
bio2zarr-0.0.6.dist-info/RECORD DELETED
@@ -1,16 +0,0 @@
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- bio2zarr/__init__.py,sha256=KiUGyya-9RHNcBldB8Lc1g3rP3CRjaL-5Olben0_6qA,49
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- bio2zarr/__main__.py,sha256=hO4vV-kPFgsYq0NQwG2r-WkserPL27oqae_tUvNB7yE,527
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- bio2zarr/_version.py,sha256=c6ZQWSJeXXzGZ3WoZWjkA-MiNkBFXMIRV9kZPo4MQ_M,411
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- bio2zarr/cli.py,sha256=iQIT3c_mos97st9bTLiBuxLL70MbNOtlTegUti6q2-g,14397
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- bio2zarr/core.py,sha256=E8MF5PUVulYtq5gaxaMWN7g5YeWPDueqlGCck3DJCuM,8516
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- bio2zarr/plink.py,sha256=huXMlxQ5C3gPmOYCavA-QW7PzaV48I2lo80cQqHT1wY,6768
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- bio2zarr/provenance.py,sha256=c_Z__QbWkLS0Rfa8D7LgEhtStng_zRMJX8comaDXIkw,142
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- bio2zarr/typing.py,sha256=BYxhL16sKRoNxa6amf6AYxvt5Ke9qzv2np_kOT_zPJo,79
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- bio2zarr/vcf.py,sha256=dJcaRCdlDlUxYE_Z3hQaqSy7EivfpihP78XSRMzlWbU,83330
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- bio2zarr/vcf_utils.py,sha256=r3NQXxWK1SYU7CcwDzSWXdX5Q8Ixk7gdCTEiFPzfUAk,17307
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- bio2zarr-0.0.6.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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- bio2zarr-0.0.6.dist-info/METADATA,sha256=siwhDelRAqr4Zo4EAPqZ4c9SkMOsU9ixRtgALAROP9A,1077
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- bio2zarr-0.0.6.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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- bio2zarr-0.0.6.dist-info/entry_points.txt,sha256=pklStOdATE5hHJm4qiIvmhHkcn21Si_XAu6MC7ieNrk,131
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- bio2zarr-0.0.6.dist-info/top_level.txt,sha256=ouAvp3u9N25eKrQbN8BCDLPcWWQLhtlgdHKu8AtEj5Q,9
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- bio2zarr-0.0.6.dist-info/RECORD,,
bio2zarr-0.0.6.dist-info/entry_points.txt DELETED
@@ -1,4 +0,0 @@
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- [console_scripts]
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- plink2zarr = bio2zarr.cli:plink2zarr
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- vcf2zarr = bio2zarr.cli:vcf2zarr
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- vcf_partition = bio2zarr.cli:vcf_partition