benchling-sdk 1.21.2__py3-none-any.whl → 1.22.0a1__py3-none-any.whl

benchling_sdk/apps/canvas/types.py

@@ -15,6 +15,9 @@ from benchling_sdk.models import (
     DropdownUiBlock,
     DropdownUiBlockCreate,
     DropdownUiBlockUpdate,
+    FileUploadUiBlock,
+    FileUploadUiBlockCreate,
+    FileUploadUiBlockUpdate,
     MarkdownUiBlock,
     MarkdownUiBlockCreate,
     MarkdownUiBlockUpdate,
@@ -46,6 +49,7 @@ UiBlock = Union[
     ChipUiBlock,
     DropdownMultiValueUiBlock,
     DropdownUiBlock,
+    FileUploadUiBlock,
     MarkdownUiBlock,
     SearchInputMultiValueUiBlock,
     SearchInputUiBlock,
@@ -67,6 +71,7 @@ _UiBlockCreate = Union[
     ChipUiBlockCreate,
     DropdownMultiValueUiBlockCreate,
     DropdownUiBlockCreate,
+    FileUploadUiBlockCreate,
     MarkdownUiBlockCreate,
     SearchInputMultiValueUiBlockCreate,
     SearchInputUiBlockCreate,
@@ -83,6 +88,7 @@ _UiBlockUpdate = Union[
     ChipUiBlockUpdate,
     DropdownMultiValueUiBlockUpdate,
     DropdownUiBlockUpdate,
+    FileUploadUiBlockUpdate,
     MarkdownUiBlockUpdate,
     SearchInputMultiValueUiBlockUpdate,
     SearchInputUiBlockUpdate,
@@ -99,6 +105,7 @@ _UI_BLOCK_MAPPINGS_CREATE = {
     ChipUiBlock: ChipUiBlockCreate,
     DropdownMultiValueUiBlock: DropdownMultiValueUiBlockCreate,
     DropdownUiBlock: DropdownUiBlockCreate,
+    FileUploadUiBlock: FileUploadUiBlockCreate,
     MarkdownUiBlock: MarkdownUiBlockCreate,
     SearchInputMultiValueUiBlock: SearchInputMultiValueUiBlockCreate,
     SearchInputUiBlock: SearchInputUiBlockCreate,
@@ -114,6 +121,7 @@ _UI_BLOCK_MAPPINGS_UPDATE = {
     ChipUiBlock: ChipUiBlockUpdate,
     DropdownMultiValueUiBlock: DropdownMultiValueUiBlockUpdate,
     DropdownUiBlock: DropdownUiBlockUpdate,
+    FileUploadUiBlock: FileUploadUiBlockUpdate,
     MarkdownUiBlock: MarkdownUiBlockUpdate,
     SearchInputMultiValueUiBlock: SearchInputMultiValueUiBlockUpdate,
     SearchInputUiBlock: SearchInputUiBlockUpdate,

benchling_sdk/benchling.py

@@ -1,4 +1,5 @@
 """Provides the Benchling class, which is the main interface for accessing Benchling's API functionality."""
+
 from __future__ import annotations
 
 from functools import cached_property
@@ -18,12 +19,16 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.stable.app_service import AppService
     from benchling_sdk.services.v2.stable.assay_result_service import AssayResultService
     from benchling_sdk.services.v2.stable.assay_run_service import AssayRunService
+    from benchling_sdk.services.v2.stable.audit_service import AuditService
     from benchling_sdk.services.v2.stable.blob_service import BlobService
     from benchling_sdk.services.v2.stable.box_service import BoxService
     from benchling_sdk.services.v2.stable.codon_usage_table_service import CodonUsageTableService
+    from benchling_sdk.services.v2.stable.connect_service import ConnectService
     from benchling_sdk.services.v2.stable.container_service import ContainerService
     from benchling_sdk.services.v2.stable.custom_entity_service import CustomEntityService
     from benchling_sdk.services.v2.stable.custom_notation_service import CustomNotationService
+    from benchling_sdk.services.v2.stable.data_frame_service import DataFrameService
+    from benchling_sdk.services.v2.stable.dataset_service import DatasetService
     from benchling_sdk.services.v2.stable.dna_alignments_service import DnaAlignmentsService
     from benchling_sdk.services.v2.stable.dna_oligo_service import DnaOligoService
     from benchling_sdk.services.v2.stable.dna_sequence_service import DnaSequenceService
@@ -34,11 +39,13 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.stable.event_service import EventService
     from benchling_sdk.services.v2.stable.export_service import ExportService
     from benchling_sdk.services.v2.stable.feature_library_service import FeatureLibraryService
+    from benchling_sdk.services.v2.stable.file_service import FileService
     from benchling_sdk.services.v2.stable.folder_service import FolderService
     from benchling_sdk.services.v2.stable.instrument_query_service import InstrumentQueryService
     from benchling_sdk.services.v2.stable.inventory_service import InventoryService
     from benchling_sdk.services.v2.stable.lab_automation_service import LabAutomationService
     from benchling_sdk.services.v2.stable.label_template_service import LabelTemplateService
+    from benchling_sdk.services.v2.stable.legacy_request_service import LegacyRequestService
     from benchling_sdk.services.v2.stable.location_service import LocationService
     from benchling_sdk.services.v2.stable.mixture_service import MixtureService
     from benchling_sdk.services.v2.stable.molecule_service import MoleculeService
@@ -50,12 +57,12 @@ if TYPE_CHECKING:
     from benchling_sdk.services.v2.stable.printer_service import PrinterService
     from benchling_sdk.services.v2.stable.project_service import ProjectService
     from benchling_sdk.services.v2.stable.registry_service import RegistryService
-    from benchling_sdk.services.v2.stable.request_service import RequestService
     from benchling_sdk.services.v2.stable.rna_oligo_service import RnaOligoService
     from benchling_sdk.services.v2.stable.rna_sequence_service import RnaSequenceService
     from benchling_sdk.services.v2.stable.schema_service import SchemaService
     from benchling_sdk.services.v2.stable.task_service import TaskService
     from benchling_sdk.services.v2.stable.team_service import TeamService
+    from benchling_sdk.services.v2.stable.test_order_service import TestOrderService
     from benchling_sdk.services.v2.stable.user_service import UserService
     from benchling_sdk.services.v2.stable.warehouse_service import WarehouseService
     from benchling_sdk.services.v2.stable.workflow_flowchart_config_version_service import (
@@ -239,6 +246,17 @@ class Benchling:
         """
         return self.v2.stable.assay_runs
 
+    @property
+    def audit(self) -> AuditService:
+        """
+        Audits.
+
+        Export audit log data for Benchling objects.
+
+        https://benchling.com/api/reference#/Audit
+        """
+        return self.v2.stable.audit
+
     @property
     def blobs(self) -> BlobService:
         """
@@ -281,6 +299,17 @@ class Benchling:
         """
         return self.v2.stable.codon_usage_tables
 
+    @property
+    def connect(self) -> ConnectService:
+        """
+        Connect.
+
+        Connect endpoints support Benchling Connect actions, like instrument data conversion.
+
+        See https://benchling.com/api/reference#/Connect
+        """
+        return self.v2.stable.connect
+
     @property
     def containers(self) -> ContainerService:
         """
@@ -323,6 +352,29 @@ class Benchling:
         """
         return self.v2.stable.custom_notations
 
+    @property
+    def data_frames(self) -> DataFrameService:
+        """
+        DataFrames.
+
+        DataFrames are Benchling objects that represent tabular data with typed columns and rows of data.
+
+        See https://benchling.com/api/v2/reference#/Data%20Frames
+        """
+        return self.v2.stable.data_frames
+
+    @property
+    def datasets(self) -> DatasetService:
+        """
+        Datasets.
+
+        Datasets are Benchling objects that represent tabular data with typed columns and rows of data. Unlike
+        Data Frames, Datasets are located in folders and can be searched in the UI.
+
+        See https://benchling.com/api/v2/reference#/Datasets
+        """
+        return self.v2.stable.datasets
+
     @property
     def dna_alignments(self) -> DnaAlignmentsService:
         """
@@ -451,6 +503,19 @@ class Benchling:
         """
         return self.v2.stable.feature_libraries
 
+    @property
+    def files(self) -> FileService:
+        """
+        Files.
+
+        Files are Benchling objects that represent files and their metadata. Compared to Blobs, which are used
+        by most Benchling products for attachments, Files are primarily used in the Analysis and Connect
+        product.
+
+        See https://benchling.com/api/v2/reference#/Files
+        """
+        return self.v2.stable.files
+
     @property
     def folders(self) -> FolderService:
         """
@@ -507,6 +572,17 @@ class Benchling:
         """
         return self.v2.stable.label_templates
 
+    @property
+    def legacy_requests(self) -> LegacyRequestService:
+        """
+        Legacy Requests.
+
+        Legacy Requests allow scientists and teams to collaborate around experimental assays and workflows.
+
+        See https://benchling.com/api/reference#/Legacy%20Requests
+        """
+        return self.v2.stable.legacy_requests
+
     @property
     def locations(self) -> LocationService:
         """
@@ -642,17 +718,6 @@ class Benchling:
         """
         return self.v2.stable.registry
 
-    @property
-    def requests(self) -> RequestService:
-        """
-        Requests.
-
-        Requests allow scientists and teams to collaborate around experimental assays and workflows.
-
-        See https://benchling.com/api/reference#/Requests
-        """
-        return self.v2.stable.requests
-
     @property
     def rna_oligos(self) -> RnaOligoService:
         """
@@ -706,6 +771,17 @@ class Benchling:
         """
         return self.v2.stable.teams
 
+    @property
+    def test_orders(self) -> TestOrderService:
+        """
+        Test Orders.
+
+        Test orders enable users to order tests for specific sample/container combinations that will be fulfilled in assays.
+
+        See https://benchling.com/api/reference?availability=la#/Test%20Orders/
+        """
+        return self.v2.stable.test_orders
+
     @property
     def users(self) -> UserService:
         """

benchling_sdk/helpers/task_helpers.py

@@ -1,10 +1,10 @@
 from dataclasses import dataclass
-from typing import Any, cast, Generic, Optional, Type, TypeVar
+from typing import Any, cast, Generic, List, Optional, Type, TypeVar, Union
 
 from benchling_api_client.v2.stable.client import Client
 
 from benchling_sdk.helpers.serialization_helpers import unset_as_none
-from benchling_sdk.models import AsyncTaskErrors, AsyncTaskLink, AsyncTaskStatus
+from benchling_sdk.models import AsyncTaskErrors, AsyncTaskErrorsItem, AsyncTaskLink, AsyncTaskStatus
 
 ResponseT = TypeVar("ResponseT")
 
@@ -14,7 +14,7 @@ class TaskCompletion(Generic[ResponseT]):
     """Return type for TaskHelper.wait_for_task, same as AsyncTask but with a typed response."""
 
     success: bool
-    errors: Optional[AsyncTaskErrors] = None
+    errors: Optional[Union[AsyncTaskErrors, List[AsyncTaskErrorsItem]]] = None
     message: Optional[str] = None
     response: Optional[ResponseT] = None
 
@@ -23,7 +23,7 @@ class TaskCompletion(Generic[ResponseT]):
 class TaskFailureException(Exception):
     """Exception type used by :py:class:`.TaskHelper` methods."""
 
-    errors: AsyncTaskErrors
+    errors: Union[AsyncTaskErrors, List[AsyncTaskErrorsItem]]
     message: Optional[str]
 
 
@@ -112,7 +112,7 @@ class TaskHelper(AsyncTaskLink, Generic[ResponseT]):
         message = None if task.status != AsyncTaskStatus.FAILED else unset_as_none(task.message)
         return TaskCompletion(
             success=task.status == AsyncTaskStatus.SUCCEEDED,
-            errors=errors,
+            errors=errors,  # type: ignore
             message=message,
             response=response,
         )