benchling-api-client 2.0.415__py3-none-any.whl → 2.0.417__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (53) hide show
  1. benchling_api_client/models/aa_sequence.py +1 -1
  2. benchling_api_client/models/aa_sequence_with_entity_type.py +1 -1
  3. benchling_api_client/models/container_content.py +183 -26
  4. benchling_api_client/models/entity.py +19 -7
  5. benchling_api_client/models/entity_or_inaccessible_resource.py +19 -7
  6. benchling_api_client/models/molecule_with_entity_type.py +787 -0
  7. benchling_api_client/models/molecule_with_entity_type_entity_type.py +22 -0
  8. benchling_api_client/models/registered_entities_list.py +89 -32
  9. benchling_api_client/models/request_response_samples_item_entity.py +216 -74
  10. benchling_api_client/models/rna_sequence_with_entity_type.py +1151 -0
  11. benchling_api_client/models/rna_sequence_with_entity_type_entity_type.py +22 -0
  12. benchling_api_client/v2/alpha/openapi.yaml +2 -2
  13. benchling_api_client/v2/beta/models/aa_sequence.py +1 -1
  14. benchling_api_client/v2/beta/models/aa_sequence_with_entity_type.py +865 -0
  15. benchling_api_client/v2/beta/models/aa_sequence_with_entity_type_entity_type.py +22 -0
  16. benchling_api_client/v2/beta/models/container_content.py +183 -26
  17. benchling_api_client/v2/beta/models/custom_entity_creator.py +2 -100
  18. benchling_api_client/v2/beta/models/custom_entity_with_entity_type.py +747 -0
  19. benchling_api_client/v2/beta/models/custom_entity_with_entity_type_entity_type.py +22 -0
  20. benchling_api_client/v2/beta/models/dna_oligo_with_entity_type.py +972 -0
  21. benchling_api_client/v2/beta/models/dna_oligo_with_entity_type_entity_type.py +22 -0
  22. benchling_api_client/v2/beta/models/dna_sequence_with_entity_type.py +1102 -0
  23. benchling_api_client/v2/beta/models/dna_sequence_with_entity_type_entity_type.py +22 -0
  24. benchling_api_client/v2/beta/models/entity.py +19 -7
  25. benchling_api_client/v2/beta/models/entity_or_inaccessible_resource.py +19 -7
  26. benchling_api_client/v2/beta/models/mixture_creator.py +2 -100
  27. benchling_api_client/v2/beta/models/mixture_with_entity_type.py +867 -0
  28. benchling_api_client/v2/beta/models/mixture_with_entity_type_entity_type.py +22 -0
  29. benchling_api_client/v2/beta/models/molecule_with_entity_type.py +787 -0
  30. benchling_api_client/v2/beta/models/molecule_with_entity_type_entity_type.py +22 -0
  31. benchling_api_client/v2/beta/models/rna_oligo_with_entity_type.py +972 -0
  32. benchling_api_client/v2/beta/models/rna_oligo_with_entity_type_entity_type.py +22 -0
  33. benchling_api_client/v2/beta/models/rna_sequence.py +1109 -0
  34. benchling_api_client/v2/beta/models/rna_sequence_part.py +183 -0
  35. benchling_api_client/v2/beta/models/rna_sequence_with_entity_type.py +1151 -0
  36. benchling_api_client/v2/beta/models/rna_sequence_with_entity_type_entity_type.py +22 -0
  37. benchling_api_client/v2/beta/openapi.yaml +219 -9
  38. benchling_api_client/v2/stable/models/aa_sequence.py +1 -1
  39. benchling_api_client/v2/stable/models/aa_sequence_with_entity_type.py +1 -1
  40. benchling_api_client/v2/stable/models/container_content.py +183 -26
  41. benchling_api_client/v2/stable/models/entity.py +19 -7
  42. benchling_api_client/v2/stable/models/entity_or_inaccessible_resource.py +19 -7
  43. benchling_api_client/v2/stable/models/molecule_with_entity_type.py +787 -0
  44. benchling_api_client/v2/stable/models/molecule_with_entity_type_entity_type.py +22 -0
  45. benchling_api_client/v2/stable/models/registered_entities_list.py +89 -32
  46. benchling_api_client/v2/stable/models/request_response_samples_item_entity.py +216 -74
  47. benchling_api_client/v2/stable/models/rna_sequence_with_entity_type.py +1151 -0
  48. benchling_api_client/v2/stable/models/rna_sequence_with_entity_type_entity_type.py +22 -0
  49. benchling_api_client/v2/stable/openapi.yaml +43 -25
  50. {benchling_api_client-2.0.415.dist-info → benchling_api_client-2.0.417.dist-info}/METADATA +1 -1
  51. {benchling_api_client-2.0.415.dist-info → benchling_api_client-2.0.417.dist-info}/RECORD +53 -27
  52. {benchling_api_client-2.0.415.dist-info → benchling_api_client-2.0.417.dist-info}/LICENSE +0 -0
  53. {benchling_api_client-2.0.415.dist-info → benchling_api_client-2.0.417.dist-info}/WHEEL +0 -0
@@ -0,0 +1,22 @@
1
+ from enum import Enum
2
+ from functools import lru_cache
3
+ from typing import cast
4
+
5
+ from ..extensions import Enums
6
+
7
+
8
+ class MoleculeWithEntityTypeEntityType(Enums.KnownString):
9
+ MOLECULE = "molecule"
10
+
11
+ def __str__(self) -> str:
12
+ return str(self.value)
13
+
14
+ @staticmethod
15
+ @lru_cache(maxsize=None)
16
+ def of_unknown(val: str) -> "MoleculeWithEntityTypeEntityType":
17
+ if not isinstance(val, str):
18
+ raise ValueError(
19
+ f"Value of MoleculeWithEntityTypeEntityType must be a string (encountered: {val})"
20
+ )
21
+ newcls = Enum("MoleculeWithEntityTypeEntityType", {"_UNKNOWN": val}, type=Enums.UnknownString) # type: ignore
22
+ return cast(MoleculeWithEntityTypeEntityType, getattr(newcls, "_UNKNOWN"))
@@ -8,7 +8,9 @@ from ..models.custom_entity_with_entity_type import CustomEntityWithEntityType
8
8
  from ..models.dna_oligo_with_entity_type import DnaOligoWithEntityType
9
9
  from ..models.dna_sequence_with_entity_type import DnaSequenceWithEntityType
10
10
  from ..models.mixture_with_entity_type import MixtureWithEntityType
11
+ from ..models.molecule_with_entity_type import MoleculeWithEntityType
11
12
  from ..models.rna_oligo_with_entity_type import RnaOligoWithEntityType
13
+ from ..models.rna_sequence_with_entity_type import RnaSequenceWithEntityType
12
14
  from ..types import UNSET, Unset
13
15
 
14
16
  T = TypeVar("T", bound="RegisteredEntitiesList")
@@ -23,11 +25,13 @@ class RegisteredEntitiesList:
23
25
  List[
24
26
  Union[
25
27
  DnaSequenceWithEntityType,
26
- CustomEntityWithEntityType,
28
+ RnaSequenceWithEntityType,
27
29
  AaSequenceWithEntityType,
28
30
  MixtureWithEntityType,
29
31
  DnaOligoWithEntityType,
30
32
  RnaOligoWithEntityType,
33
+ MoleculeWithEntityType,
34
+ CustomEntityWithEntityType,
31
35
  UnknownType,
32
36
  ]
33
37
  ],
@@ -50,7 +54,7 @@ class RegisteredEntitiesList:
50
54
  elif isinstance(entities_item_data, DnaSequenceWithEntityType):
51
55
  entities_item = entities_item_data.to_dict()
52
56
 
53
- elif isinstance(entities_item_data, CustomEntityWithEntityType):
57
+ elif isinstance(entities_item_data, RnaSequenceWithEntityType):
54
58
  entities_item = entities_item_data.to_dict()
55
59
 
56
60
  elif isinstance(entities_item_data, AaSequenceWithEntityType):
@@ -62,6 +66,12 @@ class RegisteredEntitiesList:
62
66
  elif isinstance(entities_item_data, DnaOligoWithEntityType):
63
67
  entities_item = entities_item_data.to_dict()
64
68
 
69
+ elif isinstance(entities_item_data, RnaOligoWithEntityType):
70
+ entities_item = entities_item_data.to_dict()
71
+
72
+ elif isinstance(entities_item_data, MoleculeWithEntityType):
73
+ entities_item = entities_item_data.to_dict()
74
+
65
75
  else:
66
76
  entities_item = entities_item_data.to_dict()
67
77
 
@@ -84,11 +94,13 @@ class RegisteredEntitiesList:
84
94
  List[
85
95
  Union[
86
96
  DnaSequenceWithEntityType,
87
- CustomEntityWithEntityType,
97
+ RnaSequenceWithEntityType,
88
98
  AaSequenceWithEntityType,
89
99
  MixtureWithEntityType,
90
100
  DnaOligoWithEntityType,
91
101
  RnaOligoWithEntityType,
102
+ MoleculeWithEntityType,
103
+ CustomEntityWithEntityType,
92
104
  UnknownType,
93
105
  ]
94
106
  ],
@@ -101,96 +113,135 @@ class RegisteredEntitiesList:
101
113
  data: Union[Dict[str, Any]]
102
114
  ) -> Union[
103
115
  DnaSequenceWithEntityType,
104
- CustomEntityWithEntityType,
116
+ RnaSequenceWithEntityType,
105
117
  AaSequenceWithEntityType,
106
118
  MixtureWithEntityType,
107
119
  DnaOligoWithEntityType,
108
120
  RnaOligoWithEntityType,
121
+ MoleculeWithEntityType,
122
+ CustomEntityWithEntityType,
109
123
  UnknownType,
110
124
  ]:
111
125
  entities_item: Union[
112
126
  DnaSequenceWithEntityType,
113
- CustomEntityWithEntityType,
127
+ RnaSequenceWithEntityType,
114
128
  AaSequenceWithEntityType,
115
129
  MixtureWithEntityType,
116
130
  DnaOligoWithEntityType,
117
131
  RnaOligoWithEntityType,
132
+ MoleculeWithEntityType,
133
+ CustomEntityWithEntityType,
118
134
  UnknownType,
119
135
  ]
120
136
  discriminator_value: str = cast(str, data.get("entityType"))
121
137
  if discriminator_value is not None:
138
+ entity: Union[
139
+ DnaSequenceWithEntityType,
140
+ RnaSequenceWithEntityType,
141
+ AaSequenceWithEntityType,
142
+ MixtureWithEntityType,
143
+ DnaOligoWithEntityType,
144
+ RnaOligoWithEntityType,
145
+ MoleculeWithEntityType,
146
+ CustomEntityWithEntityType,
147
+ UnknownType,
148
+ ]
122
149
  if discriminator_value == "aa_sequence":
123
- entities_item = AaSequenceWithEntityType.from_dict(data, strict=False)
150
+ entity = AaSequenceWithEntityType.from_dict(data, strict=False)
124
151
 
125
- return entities_item
152
+ return entity
126
153
  if discriminator_value == "custom_entity":
127
- entities_item = CustomEntityWithEntityType.from_dict(data, strict=False)
154
+ entity = CustomEntityWithEntityType.from_dict(data, strict=False)
128
155
 
129
- return entities_item
156
+ return entity
130
157
  if discriminator_value == "dna_oligo":
131
- entities_item = DnaOligoWithEntityType.from_dict(data, strict=False)
158
+ entity = DnaOligoWithEntityType.from_dict(data, strict=False)
132
159
 
133
- return entities_item
160
+ return entity
134
161
  if discriminator_value == "dna_sequence":
135
- entities_item = DnaSequenceWithEntityType.from_dict(data, strict=False)
162
+ entity = DnaSequenceWithEntityType.from_dict(data, strict=False)
136
163
 
137
- return entities_item
164
+ return entity
138
165
  if discriminator_value == "mixture":
139
- entities_item = MixtureWithEntityType.from_dict(data, strict=False)
166
+ entity = MixtureWithEntityType.from_dict(data, strict=False)
140
167
 
141
- return entities_item
168
+ return entity
169
+ if discriminator_value == "molecule":
170
+ entity = MoleculeWithEntityType.from_dict(data, strict=False)
171
+
172
+ return entity
142
173
  if discriminator_value == "rna_oligo":
143
- entities_item = RnaOligoWithEntityType.from_dict(data, strict=False)
174
+ entity = RnaOligoWithEntityType.from_dict(data, strict=False)
175
+
176
+ return entity
177
+ if discriminator_value == "rna_sequence":
178
+ entity = RnaSequenceWithEntityType.from_dict(data, strict=False)
144
179
 
145
- return entities_item
180
+ return entity
146
181
 
147
182
  return UnknownType(value=data)
148
183
  try:
149
184
  if not isinstance(data, dict):
150
185
  raise TypeError()
151
- entities_item = DnaSequenceWithEntityType.from_dict(data, strict=True)
186
+ entity = DnaSequenceWithEntityType.from_dict(data, strict=True)
187
+
188
+ return entity
189
+ except: # noqa: E722
190
+ pass
191
+ try:
192
+ if not isinstance(data, dict):
193
+ raise TypeError()
194
+ entity = RnaSequenceWithEntityType.from_dict(data, strict=True)
195
+
196
+ return entity
197
+ except: # noqa: E722
198
+ pass
199
+ try:
200
+ if not isinstance(data, dict):
201
+ raise TypeError()
202
+ entity = AaSequenceWithEntityType.from_dict(data, strict=True)
152
203
 
153
- return entities_item
204
+ return entity
154
205
  except: # noqa: E722
155
206
  pass
156
207
  try:
157
208
  if not isinstance(data, dict):
158
209
  raise TypeError()
159
- entities_item = CustomEntityWithEntityType.from_dict(data, strict=True)
210
+ entity = MixtureWithEntityType.from_dict(data, strict=True)
160
211
 
161
- return entities_item
212
+ return entity
162
213
  except: # noqa: E722
163
214
  pass
164
215
  try:
165
216
  if not isinstance(data, dict):
166
217
  raise TypeError()
167
- entities_item = AaSequenceWithEntityType.from_dict(data, strict=True)
218
+ entity = DnaOligoWithEntityType.from_dict(data, strict=True)
168
219
 
169
- return entities_item
220
+ return entity
170
221
  except: # noqa: E722
171
222
  pass
172
223
  try:
173
224
  if not isinstance(data, dict):
174
225
  raise TypeError()
175
- entities_item = MixtureWithEntityType.from_dict(data, strict=True)
226
+ entity = RnaOligoWithEntityType.from_dict(data, strict=True)
176
227
 
177
- return entities_item
228
+ return entity
178
229
  except: # noqa: E722
179
230
  pass
180
231
  try:
181
232
  if not isinstance(data, dict):
182
233
  raise TypeError()
183
- entities_item = DnaOligoWithEntityType.from_dict(data, strict=True)
234
+ entity = MoleculeWithEntityType.from_dict(data, strict=True)
184
235
 
185
- return entities_item
236
+ return entity
186
237
  except: # noqa: E722
187
238
  pass
188
239
  try:
189
240
  if not isinstance(data, dict):
190
241
  raise TypeError()
191
- entities_item = RnaOligoWithEntityType.from_dict(data, strict=True)
242
+ entity = CustomEntityWithEntityType.from_dict(data, strict=True)
192
243
 
193
- return entities_item
244
+ return entity
194
245
  except: # noqa: E722
195
246
  pass
196
247
  return UnknownType(data)
@@ -212,11 +263,13 @@ class RegisteredEntitiesList:
212
263
  List[
213
264
  Union[
214
265
  DnaSequenceWithEntityType,
215
- CustomEntityWithEntityType,
266
+ RnaSequenceWithEntityType,
216
267
  AaSequenceWithEntityType,
217
268
  MixtureWithEntityType,
218
269
  DnaOligoWithEntityType,
219
270
  RnaOligoWithEntityType,
271
+ MoleculeWithEntityType,
272
+ CustomEntityWithEntityType,
220
273
  UnknownType,
221
274
  ]
222
275
  ],
@@ -256,11 +309,13 @@ class RegisteredEntitiesList:
256
309
  ) -> List[
257
310
  Union[
258
311
  DnaSequenceWithEntityType,
259
- CustomEntityWithEntityType,
312
+ RnaSequenceWithEntityType,
260
313
  AaSequenceWithEntityType,
261
314
  MixtureWithEntityType,
262
315
  DnaOligoWithEntityType,
263
316
  RnaOligoWithEntityType,
317
+ MoleculeWithEntityType,
318
+ CustomEntityWithEntityType,
264
319
  UnknownType,
265
320
  ]
266
321
  ]:
@@ -274,11 +329,13 @@ class RegisteredEntitiesList:
274
329
  value: List[
275
330
  Union[
276
331
  DnaSequenceWithEntityType,
277
- CustomEntityWithEntityType,
332
+ RnaSequenceWithEntityType,
278
333
  AaSequenceWithEntityType,
279
334
  MixtureWithEntityType,
280
335
  DnaOligoWithEntityType,
281
336
  RnaOligoWithEntityType,
337
+ MoleculeWithEntityType,
338
+ CustomEntityWithEntityType,
282
339
  UnknownType,
283
340
  ]
284
341
  ],