bella-companion 0.0.48__py3-none-any.whl → 0.1.2__py3-none-any.whl

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Files changed (72) hide show
  1. bella_companion/eucovid/beast_configs/GLM.xml +27 -17
  2. bella_companion/eucovid/beast_configs/MLP.xml +2 -3
  3. bella_companion/eucovid/run_beast.py +13 -107
  4. bella_companion/simulations/figures/epi_multitype.py +1 -1
  5. bella_companion/simulations/figures/fbd_2traits.py +1 -1
  6. bella_companion/utils/beast.py +2 -2
  7. bella_companion/utils/explain/pdp.py +14 -7
  8. bella_companion/utils/explain/shap.py +10 -8
  9. bella_companion/utils/explain/typeguards.py +1 -1
  10. {bella_companion-0.0.48.dist-info → bella_companion-0.1.2.dist-info}/METADATA +8 -5
  11. bella_companion-0.1.2.dist-info/RECORD +63 -0
  12. bella_companion-0.1.2.dist-info/WHEEL +4 -0
  13. {bella_companion-0.0.48.dist-info → bella_companion-0.1.2.dist-info}/entry_points.txt +1 -0
  14. bella_companion/__pycache__/__init__.cpython-310.pyc +0 -0
  15. bella_companion/__pycache__/cli.cpython-310.pyc +0 -0
  16. bella_companion/__pycache__/features.cpython-310.pyc +0 -0
  17. bella_companion/eucovid/__pycache__/__init__.cpython-310.pyc +0 -0
  18. bella_companion/eucovid/__pycache__/run_beast.cpython-310.pyc +0 -0
  19. bella_companion/eucovid/beast_configs/Nonparametric.xml +0 -399
  20. bella_companion/eucovid/data/case_data.csv +0 -346
  21. bella_companion/eucovid/data/change_dates.csv +0 -8
  22. bella_companion/eucovid/data/osi.csv +0 -376
  23. bella_companion/eucovid/data/predictors/all/closedborders_7e_nt.csv +0 -35
  24. bella_companion/eucovid/data/predictors/all/dist_7e_ls.csv +0 -35
  25. bella_companion/eucovid/data/predictors/all/flight_7e_ls.csv +0 -35
  26. bella_companion/eucovid/data/predictors/all/flight_pop_x_7e_ls.csv +0 -35
  27. bella_companion/eucovid/data/predictors/all/osi_x_7e_ls.csv +0 -35
  28. bella_companion/eucovid/data/predictors/all/osi_y_7e_ls.csv +0 -35
  29. bella_companion/eucovid/data/predictors/all/pop_x_7e_ls.csv +0 -35
  30. bella_companion/eucovid/data/predictors/all/pop_y_7e_ls.csv +0 -35
  31. bella_companion/eucovid/data/predictors/all/sharedborders_7e_nt.csv +0 -35
  32. bella_companion/eucovid/data/predictors/changetimes_all_7e.csv +0 -6
  33. bella_companion/platyrrhine/__pycache__/__init__.cpython-310.pyc +0 -0
  34. bella_companion/platyrrhine/__pycache__/results.cpython-310.pyc +0 -0
  35. bella_companion/platyrrhine/__pycache__/run_beast.cpython-310.pyc +0 -0
  36. bella_companion/platyrrhine/__pycache__/summarize.cpython-310.pyc +0 -0
  37. bella_companion/platyrrhine/__pycache__/summarize_logs.cpython-310.pyc +0 -0
  38. bella_companion/simulations/__pycache__/__init__.cpython-310.pyc +0 -0
  39. bella_companion/simulations/__pycache__/features.cpython-310.pyc +0 -0
  40. bella_companion/simulations/__pycache__/generate_data.cpython-310.pyc +0 -0
  41. bella_companion/simulations/__pycache__/generate_figures.cpython-310.pyc +0 -0
  42. bella_companion/simulations/__pycache__/metrics.cpython-310.pyc +0 -0
  43. bella_companion/simulations/__pycache__/run_beast.cpython-310.pyc +0 -0
  44. bella_companion/simulations/__pycache__/summarize.cpython-310.pyc +0 -0
  45. bella_companion/simulations/__pycache__/summarize_logs.cpython-310.pyc +0 -0
  46. bella_companion/simulations/figures/__pycache__/__init__.cpython-310.pyc +0 -0
  47. bella_companion/simulations/figures/__pycache__/epi_multitype.cpython-310.pyc +0 -0
  48. bella_companion/simulations/figures/__pycache__/epi_skyline.cpython-310.pyc +0 -0
  49. bella_companion/simulations/figures/__pycache__/fbd_2traits.cpython-310.pyc +0 -0
  50. bella_companion/simulations/figures/__pycache__/fbd_no_traits.cpython-310.pyc +0 -0
  51. bella_companion/simulations/figures/__pycache__/scenarios.cpython-310.pyc +0 -0
  52. bella_companion/simulations/figures/__pycache__/utils.cpython-310.pyc +0 -0
  53. bella_companion/simulations/scenarios/__pycache__/__init__.cpython-310.pyc +0 -0
  54. bella_companion/simulations/scenarios/__pycache__/common.cpython-310.pyc +0 -0
  55. bella_companion/simulations/scenarios/__pycache__/epi_multitype.cpython-310.pyc +0 -0
  56. bella_companion/simulations/scenarios/__pycache__/epi_skyline.cpython-310.pyc +0 -0
  57. bella_companion/simulations/scenarios/__pycache__/fbd_2traits.cpython-310.pyc +0 -0
  58. bella_companion/simulations/scenarios/__pycache__/fbd_no_traits.cpython-310.pyc +0 -0
  59. bella_companion/simulations/scenarios/__pycache__/scenario.cpython-310.pyc +0 -0
  60. bella_companion/utils/__pycache__/__init__.cpython-310.pyc +0 -0
  61. bella_companion/utils/__pycache__/beast.cpython-310.pyc +0 -0
  62. bella_companion/utils/__pycache__/explain.cpython-310.pyc +0 -0
  63. bella_companion/utils/__pycache__/slurm.cpython-310.pyc +0 -0
  64. bella_companion/utils/explain/__pycache__/__init__.cpython-310.pyc +0 -0
  65. bella_companion/utils/explain/__pycache__/pdp.cpython-310.pyc +0 -0
  66. bella_companion/utils/explain/__pycache__/shap.cpython-310.pyc +0 -0
  67. bella_companion/utils/explain/__pycache__/typeguards.cpython-310.pyc +0 -0
  68. bella_companion-0.0.48.dist-info/RECORD +0 -118
  69. bella_companion-0.0.48.dist-info/WHEEL +0 -5
  70. bella_companion-0.0.48.dist-info/top_level.txt +0 -1
  71. /bella_companion/eucovid/data/{predictors/changetimes_flights_4e.csv → changetimes.csv} +0 -0
  72. /bella_companion/eucovid/data/{predictors/flight_pop_x_4e_ls.csv → flights.csv} +0 -0
bella_companion/eucovid/data/predictors/changetimes_all_7e.csv DELETED
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bella_companion-0.0.48.dist-info/RECORD DELETED
@@ -1,118 +0,0 @@
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- bella_companion/eucovid/data/predictors/all/flight_7e_ls.csv,sha256=5WztZpQrjK7puERA1oxsCn5t2G1w9NGTGKjr85gMQ54,1873
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- bella_companion/eucovid/data/predictors/all/flight_pop_x_7e_ls.csv,sha256=qfRTXyZItzEm8pxurhFYO-DvpJXD-J4lMH5eyZKF0aE,1862
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- bella_companion/eucovid/data/predictors/all/osi_x_7e_ls.csv,sha256=kke2eHlVuc84qMj1WBllhBG2BQt7JHUWDZeiVoAP8Lw,1900
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- bella_companion/eucovid/data/predictors/all/osi_y_7e_ls.csv,sha256=5YDXe4GstyyRKP15213cAAEm5lVFW_bC98R8ipc1XoE,1900
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- bella_companion/eucovid/data/predictors/all/sharedborders_7e_nt.csv,sha256=pPVT5DIaZuc3B0mSs-B3kw3G2zja1LfmL_xLwlNtLDo,280
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